scilab-ann is marked for autoremoval from testing

[Debian testing autoremoval watch]

scilab-ann 0.4.2.4-1 is marked for autoremoval from testing on 2016-09-18

It (build-)depends on packages with these RC bugs:
749833: scilab: Scilab include non-free codes


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scilab-plotlib is marked for autoremoval from testing

[Debian testing autoremoval watch]

scilab-plotlib 0.42-1 is marked for autoremoval from testing on 2016-09-18

It (build-)depends on packages with these RC bugs:
749833: scilab: Scilab include non-free codes


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ros-rviz is marked for autoremoval from testing

[Debian testing autoremoval watch]

ros-rviz 1.12.1+dfsg-2 is marked for autoremoval from testing on 2016-10-07

It (build-)depends on packages with these RC bugs:
835284: urdfdom: FTBFS: Could not find a configuration file for package 
"urdfdom_headers" that is 367 compatible with requested version "0.4".


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sciscipy is marked for autoremoval from testing

[Debian testing autoremoval watch]

sciscipy 1.0.1-2 is marked for autoremoval from testing on 2016-09-18

It (build-)depends on packages with these RC bugs:
749833: scilab: Scilab include non-free codes


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scilab is marked for autoremoval from testing

[Debian testing autoremoval watch]

scilab 5.5.2-2 is marked for autoremoval from testing on 2016-09-18

It is affected by these RC bugs:
749833: scilab: Scilab include non-free codes


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Bug#837121: gazebo: please restrict libkido-dev (build-)dependency to architectures where it is available.

[Peter Green]

Package: gazebo
Version: 7.3.0+dfsg-3
Severity: serious
Tags: patch

The most recent version of gazebo added a build-dependency on 
libkido-dev to the source package and added a binary on libkido-dev to 
libgazebo7-dev


No mention of this was made in the changelog and no other changes in the 
upload seem to be related but 
https://anonscm.debian.org/git/debian-science/packages/gazebo.git/commit/?id=80f9a218ccebb32258812afdf1cce6b50ab88126 
indicates this was to add support for a new feature.


libkido-dev is only available on a handful of architectures. As a result 
this new (build-)dependency is blocking the migration of the new version 
of the package (and hence the FTBFS fix) to testing.


The attatched patch restricts the (build-)dependencies on libkido-dev to 
the architectures where it is actually available (amd64, arm64, i386, 
ppc64el and alpha)
diff -Nru gazebo-7.3.0+dfsg/debian/changelog gazebo-7.3.0+dfsg/debian/changelog
--- gazebo-7.3.0+dfsg/debian/changelog  2016-08-31 17:57:53.0 +
+++ gazebo-7.3.0+dfsg/debian/changelog  2016-09-07 15:06:23.0 +
@@ -1,3 +1,10 @@
+gazebo (7.3.0+dfsg-3+rpi1) stretch-staging; urgency=medium
+
+  * Restrict (build-)dependency on libkido-dev to architectures where that 
package
+is actually available (amd64, arm64, i386, ppc64el and alpha). 
+
+ -- Peter Michael Green   Wed, 07 Sep 2016 15:06:23 
+
+
 gazebo (7.3.0+dfsg-3) unstable; urgency=medium
 
   [ Jochen Sprickerhof ]
diff -Nru gazebo-7.3.0+dfsg/debian/control gazebo-7.3.0+dfsg/debian/control
--- gazebo-7.3.0+dfsg/debian/control2016-08-30 22:54:59.0 +
+++ gazebo-7.3.0+dfsg/debian/control2016-09-07 15:06:07.0 +
@@ -45,7 +45,7 @@
libbullet-dev,
libsimbody-dev,
libsimbody-dev (<< 4.0.0),
-   libkido-dev,
+   libkido-dev [amd64 arm64 i386 powerpc alpha],
libgdal-dev,
ruby-ronn,
libgtest-dev
@@ -138,7 +138,7 @@
  libignition-math2-dev,
  libbullet-dev,
  libsimbody-dev,
- libkido-dev,
+ libkido-dev [amd64 arm64 i386 powerpc alpha],
  libgazebo7 (= ${binary:Version}),
  gazebo7-common (= ${source:Version}),
  gazebo7-plugin-base (= ${binary:Version}),
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hypre_2.8.0b-4_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 08 Sep 2016 20:36:58 +
Source: hypre
Binary: libhypre-2.8.0b libhypre-dev
Architecture: source
Version: 2.8.0b-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Mattia Rizzolo 
Description:
 libhypre-2.8.0b - High Performance Matrix Preconditioners - Shared Library
 libhypre-dev - High Performance Matrix Preconditioners - Development Files
Closes: 837109
Changes:
 hypre (2.8.0b-4) unstable; urgency=medium
 .
   * Team upload.
   * Apply patch from Bas Couwenberg  to turn libhypre-dev
 into an arch:any package, to be able to specify a stricter version
 restriction against libhypre-2.8.0b.  Closes: #837109
   * Bump Standards-Version to 3.9.8, no changes needed.
Checksums-Sha1:
 ebc6be923091835fa2d5546f54d8f352365d9544 2123 hypre_2.8.0b-4.dsc
 3f10981164f05f1b1f86abf074e923104b9567b4 10456 hypre_2.8.0b-4.debian.tar.xz
Checksums-Sha256:
 8fe3eff5e9e9541fd29bed9141ebeab4f30663355e819b38d5275b86d05f6653 2123 
hypre_2.8.0b-4.dsc
 2826737ff2baf92e70e862043b02b067ca3dbd11dc02599589613d9415dd7582 10456 
hypre_2.8.0b-4.debian.tar.xz
Files:
 61f1120d8b0bc18a889e53ed52af3893 2123 math extra hypre_2.8.0b-4.dsc
 6bfb7a3471cb32b510b2f2bf09ce809e 10456 math extra hypre_2.8.0b-4.debian.tar.xz

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-END PGP SIGNATURE-


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Processing of hypre_2.8.0b-4_source.changes

[Debian FTP Masters]

hypre_2.8.0b-4_source.changes uploaded successfully to localhost
along with the files:
  hypre_2.8.0b-4.dsc
  hypre_2.8.0b-4.debian.tar.xz

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

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Bug#837109: hypre: -dev package library dependency not binNMU safe

[Bas Couwenberg]

Source: hypre
Version: 2.8.0b-3
Severity: serious
Tags: patch
Justification: makes the package in question unusable or mostly so
Control: block 836917 by -1
Control: affects -1 src:freefem++ src:petsc src:aster src:petsc4py src:slepc 
src:deal.ii src:getdp src:slepc4py src:dolfin

Dear Maintainer,

The upload of openmpi (2.0.1-3) has triggered an uncoordinated
transition (#836917). Unfortunately the version constraint on the
library package from the -dev package is not binNMU safe causing it not
to be installable when the package version contains a binNMU version
(+bN), this prevents the rebuilds of freefem++ & petsc:

 freefem++ build-depends on:
 - libhypre-dev:amd64
 libhypre-dev depends on missing:
 - libhypre-2.8.0b:amd64 (< 2.8.0b-3+1~)

 petsc build-depends on:
 - libhypre-dev:amd64 (>= 2.4.0)
 libhypre-dev depends on missing:
 - libhypre-2.8.0b:amd64 (< 2.8.0b-3+1~)

The attached patch turn the -dev package into an arch:any package with a
(= ${binary:Version) version requirement for the library package which
ensures that the same version of the -dev & library packages are
installed and which supports +bN binary versions for binNMUs.

Please apply the patch in the next revision of hypre to unblock the
rebuilds of freefem++, petsc, and their reverse dependencies for the
ongoing openmpi transition.

Kind Regards,

Bas
diff -Nru hypre-2.8.0b/debian/control hypre-2.8.0b/debian/control
--- hypre-2.8.0b/debian/control	2016-02-29 13:08:46.0 +0100
+++ hypre-2.8.0b/debian/control	2016-09-08 21:29:20.0 +0200
@@ -32,12 +32,11 @@
  This package contains the shared libraries.
 
 Package: libhypre-dev
-Architecture: all
+Architecture: any
 Section: libdevel
 Depends:
  libblas-dev | libblas.so,
- libhypre-2.8.0b (>= ${source:Version}),
- libhypre-2.8.0b (<< ${source:Version}+1~),
+ libhypre-2.8.0b (= ${binary:Version}),
  liblapack-dev | liblapack.so,
  libsuperlu-dev,
  mpi-default-dev,
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Processed: hypre: -dev package library dependency not binNMU safe

[Debian Bug Tracking System]

Processing control commands:

> block 836917 by -1
Bug #836917 [release.debian.org] transition: openmpi
836917 was blocked by: 831164 811651 837030 812036 830440 837061 835680 837059 
837062 811907 837055 837058 825934 837012 817690
836917 was not blocking any bugs.
Added blocking bug(s) of 836917: 837109
> affects -1 src:freefem++ src:petsc src:aster src:petsc4py src:slepc 
> src:deal.ii src:getdp src:slepc4py src:dolfin
Bug #837109 [src:hypre] hypre: -dev package library dependency not binNMU safe
Added indication that 837109 affects src:freefem++, src:petsc, src:aster, 
src:petsc4py, src:slepc, src:deal.ii, src:getdp, src:slepc4py, and src:dolfin

-- 
836917: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836917
837109: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=837109
Debian Bug Tracking System
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[bts-link] source package src:shark

[bts-link-upstream]

#
# bts-link upstream status pull for source package src:shark
# see http://lists.debian.org/debian-devel-announce/2006/05/msg1.html
#

user bts-link-upstr...@lists.alioth.debian.org

# remote status report for #836599 (http://bugs.debian.org/836599)
# Bug title: shark: FTBFS on mips/mipsel: test errors
#  * https://github.com/Shark-ML/Shark/issues/112
#  * remote status changed: (?) -> open
usertags 836599 + status-open

thanks

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[bts-link] source package src:opengm

[bts-link-upstream]

#
# bts-link upstream status pull for source package src:opengm
# see http://lists.debian.org/debian-devel-announce/2006/05/msg1.html
#

user bts-link-upstr...@lists.alioth.debian.org

# remote status report for #836413 (http://bugs.debian.org/836413)
# Bug title: opengm: FTBFS on powerpc: test-io-hdf5 data types not equal
#  * https://github.com/opengm/opengm/issues/477
#  * remote status changed: (?) -> open
usertags 836413 + status-open

thanks

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ros-bloom 0.5.22-1 MIGRATED to testing

[Debian testing watch]

FYI: The status of the ros-bloom source package
in Debian's testing distribution has changed.

  Previous version: 0.5.21-1
  Current version:  0.5.22-1

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ros-interactive-markers 1.11.3-1 MIGRATED to testing

[Debian testing watch]

FYI: The status of the ros-interactive-markers source package
in Debian's testing distribution has changed.

  Previous version: 1.11.1-2
  Current version:  1.11.3-1

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ros-rospkg 1.0.40-1 MIGRATED to testing

[Debian testing watch]

FYI: The status of the ros-rospkg source package
in Debian's testing distribution has changed.

  Previous version: 1.0.39-1
  Current version:  1.0.40-1

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opengm 2.3.6+20160901-1 MIGRATED to testing

[Debian testing watch]

FYI: The status of the opengm source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  2.3.6+20160901-1

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ros-rospack 2.3.0-4 MIGRATED to testing

[Debian testing watch]

FYI: The status of the ros-rospack source package
in Debian's testing distribution has changed.

  Previous version: 2.3.0-3
  Current version:  2.3.0-4

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Processed: block 836917 with 837012

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> block 836917 with 837012
Bug #836917 [release.debian.org] transition: openmpi
836917 was blocked by: 835680 837058 831164 825934 811651 811907 812036 817690 
837055
836917 was not blocking any bugs.
Added blocking bug(s) of 836917: 837012
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
836917: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836917
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Contact ow...@bugs.debian.org with problems

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Processed: p4est: FTBFS due to test failures

[Debian Bug Tracking System]

Processing control commands:

> block 836917 by -1
Bug #836917 [release.debian.org] transition: openmpi
836917 was blocked by: 837055 811907 817690 812036 811651 825934 835680 831164
836917 was not blocking any bugs.
Added blocking bug(s) of 836917: 837058

-- 
836917: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836917
837058: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=837058
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Bug#837055: fftw: FTBFS due to bfnnconv.pl failing to execute m-ascii.pl (. removed from @INC in perl)

[Bas Couwenberg]

Source: fftw
Version: 2.1.5-4
Severity: serious
Tags: patch
Justification: makes the package in question unusable or mostly so
Control: block 836917 by -1

Dear Maintainer,

The upload of openmpi (2.0.1-3) has triggered an uncoordinated
transition (#836917). Unfortunately your package FTBFS due to the recent
change in perl:

 https://lists.debian.org/debian-devel-announce/2016/08/msg00013.html

The attached patch adds . back to @INC if it's not present, to fix the
bfnnconv.pl failure to execute m-ascii.pl.

Kind Regards,

Bas
diff -Nru fftw-2.1.5/debian/patches/perl-dot-in-INC.patch fftw-2.1.5/debian/patches/perl-dot-in-INC.patch
--- fftw-2.1.5/debian/patches/perl-dot-in-INC.patch	1970-01-01 01:00:00.0 +0100
+++ fftw-2.1.5/debian/patches/perl-dot-in-INC.patch	2016-09-08 13:11:40.0 +0200
@@ -0,0 +1,19 @@
+Description: Add . to @INC if removed for CVE-2016-1238.
+ bfnnconv.pl fails to execute m-ascii.pl otherwise.
+ See also: https://lists.debian.org/debian-devel-announce/2016/08/msg00013.html
+Author: Bas Couwenberg 
+
+--- a/FAQ/bfnnconv.pl
 b/FAQ/bfnnconv.pl
+@@ -21,6 +21,11 @@
+ # by the GPL.  However, I would appreciate it if you credited me if
+ # appropriate in any documents you format using BFNN.)
+ 
++# Add . to @INC if removed for CVE-2016-1238
++BEGIN {
++push @INC, "." if(!grep /^\.$/, @INC);
++}
++
+ @outputs=('ascii','info','html');
+ 
+ while ($ARGV[0] =~ m/^\-/) {
diff -Nru fftw-2.1.5/debian/patches/series fftw-2.1.5/debian/patches/series
--- fftw-2.1.5/debian/patches/series	2016-07-11 08:55:51.0 +0200
+++ fftw-2.1.5/debian/patches/series	2016-09-08 13:08:54.0 +0200
@@ -4,3 +4,4 @@
 05_ac_define_syntax.diff
 info-syntax
 fix-texi2html-perl522.patch
+perl-dot-in-INC.patch
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Processed: fftw: FTBFS due to bfnnconv.pl failing to execute m-ascii.pl (. removed from @INC in perl)

[Debian Bug Tracking System]

Processing control commands:

> block 836917 by -1
Bug #836917 [release.debian.org] transition: openmpi
836917 was blocked by: 831164 817690 835680 811907 825934 812036 811651
836917 was not blocking any bugs.
Added blocking bug(s) of 836917: 837055

-- 
836917: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836917
837055: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=837055
Debian Bug Tracking System
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Processed: Blocking bugs

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> block 836917 by 831164 811651 812036 825934 835680 811907 817690
Bug #836917 [release.debian.org] transition: openmpi
836917 was not blocked by any bugs.
836917 was not blocking any bugs.
Added blocking bug(s) of 836917: 811651, 825934, 812036, 811907, 817690, 
831164, and 835680
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
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