Bug#841578: marked as done (gap-float: FTBFS: configure: error: library fplll not found. Using --with-fplll, specify its location, "extern" to compile it locally, or "no" to disable it.)

[Debian Bug Tracking System]

Your message dated Tue, 25 Oct 2016 03:15:38 +0100
with message-id 
and subject line gap-float: FTBFS: false assertion
has caused the Debian Bug report #841578,
regarding gap-float: FTBFS: configure: error: library fplll not found. Using 
--with-fplll, specify its location, "extern" to compile it locally, or "no" to 
disable it.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
841578: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=841578
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: gap-float
Version: 0.7.4+ds-1
Severity: serious
Tags: stretch sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20161021 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> checking for mpfi_sqrt in -lmpfi... yes
> checking for mpc.h... yes
> checking for mpc_sqrt in -lmpc... yes
> checking for fplll.h... yes
> checking for lllReduction in -lfplll... no
> configure: error: library fplll not found. Using --with-fplll, specify its 
> location, "extern" to compile it locally, or "no" to disable it.
>   "tail -v -n +0 config.log"

If the failure looks somehow time/timezone related:
Note that this rebuild was performed without the 'tzdata' package
installed in the chroot. tzdata used be (transitively) part of
build-essential, but it no longer is. If this package requires it to
build, it should be added to build-depends. For the release team's
opinion on this, see
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836940#185

If the failure looks LSB-related:
similarly to tzdata, lsb-base is not installed in the build chroot.

The full build log is available from:
   http://aws-logs.debian.net/2016/10/21/gap-float_0.7.4+ds-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

It appears that the last package builds well.
Jerome
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gap-float_0.7.4+ds-3_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 20 Oct 2016 03:11:47 +
Source: gap-float
Binary: gap-float
Architecture: source
Version: 0.7.4+ds-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Jerome Benoit 
Description:
 gap-float  - multi-precision floating-point computation for GAP
Changes:
 gap-float (0.7.4+ds-3) unstable; urgency=medium
 .
   * Upload to unstable.
Checksums-Sha1:
 81a411dc99e2186c847d48ac8fcb3a19491d27a1 2946 gap-float_0.7.4+ds-3.dsc
 1ecc1198a2f70f9c355cacfcfd3f434162912af6 10352 
gap-float_0.7.4+ds-3.debian.tar.xz
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 acf540baed63d8f500f9987f6b509706 2946 math optional gap-float_0.7.4+ds-3.dsc
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Thank you for your contribution to Debian.

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Processing of gap-float_0.7.4+ds-3_source.changes

[Debian FTP Masters]

gap-float_0.7.4+ds-3_source.changes uploaded successfully to localhost
along with the files:
  gap-float_0.7.4+ds-3.dsc
  gap-float_0.7.4+ds-3.debian.tar.xz

Greetings,

Your Debian queue daemon (running on host usper.debian.org)

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Bug#841975: src:scilab: Please support building with HDF5 1.10

[Gilles Filippini]

Package: src:scilab
Version: 5.5.2-2
Severity: important
Tags: patch

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Hi,

Please find attached a patch to support building against HDF5-1.10 currently in 
experimental. This patch partly comes from upstream ticket #14539 [1].

[1] https://bugzilla.scilab.org/show_bug.cgi?id=14539

I intend to request a transition slot this week, and will upload if need be, as 
member of the Debian Science team.

Thanks,

_g.

- -- System Information:
Debian Release: stretch/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.6.0-1-amd64 (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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diff -Nru scilab-5.5.2/debian/changelog scilab-5.5.2/debian/changelog
--- scilab-5.5.2/debian/changelog	2015-10-30 10:22:41.0 +0100
+++ scilab-5.5.2/debian/changelog	2016-10-22 15:54:38.0 +0200
@@ -1,3 +1,9 @@
+scilab (5.5.2-3) unstable; urgency=medium
+
+  * New patch to support HDF5-1.10
+
+ -- Gilles Filippini   Sat, 22 Oct 2016 15:54:20 +0200
+
 scilab (5.5.2-2) unstable; urgency=medium
 
   * Team upload.
diff -Nru scilab-5.5.2/debian/patches/hdf5-1.10-api.patch scilab-5.5.2/debian/patches/hdf5-1.10-api.patch
--- scilab-5.5.2/debian/patches/hdf5-1.10-api.patch	1970-01-01 01:00:00.0 +0100
+++ scilab-5.5.2/debian/patches/hdf5-1.10-api.patch	2016-10-24 21:14:57.0 +0200
@@ -0,0 +1,331 @@
+Index: scilab-5.5.2/m4/hdf5.m4
+===
+--- scilab-5.5.2.orig/m4/hdf5.m4
 scilab-5.5.2/m4/hdf5.m4
+@@ -65,6 +65,11 @@ if test "x$with_hdf5_library" != "xyes";
+ [AC_MSG_ERROR([libhdf5 or libhdf5_hl: library missing. (Cannot find symbol H5Fopen) in $with_hdf5_library. Check if libhdf5 is installed and if the version is correct])],
+ [-lz]
+ )
++AC_CHECK_LIB([hdf5], [H5Rdereference2],
++[FORCE_HDF_1_10_API="-DH5Rdereference_vers=2"],
++[],
++[-lz]
++)
+ else
+ if $WITH_DEVTOOLS; then # Scilab thirparties
+ HDF5_LIBS="-L$DEVTOOLS_LIBDIR -lhdf5 -lhdf5_hl"
+@@ -93,6 +98,7 @@ LIBS="$save_LIBS"
+ 
+ AC_SUBST(HDF5_LIBS)
+ AC_SUBST(HDF5_CFLAGS)
++AC_SUBST(FORCE_HDF_1_10_API)
+ 
+ AC_DEFINE([WITH_HDF5], [], [With the HDF5 library])
+ 
+Index: scilab-5.5.2/modules/hdf5/Makefile.am
+===
+--- scilab-5.5.2.orig/modules/hdf5/Makefile.am
 scilab-5.5.2/modules/hdf5/Makefile.am
+@@ -86,6 +86,8 @@ FORCE_HDF_1.8_API =  -DH5Dopen_vers=2 -D
+  -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Tget_array_dims_vers=2 \
+  -DH5Acreate_vers=2 -DNO_DEPRECATED_SYMBOLS
+ 
++FORCE_HDF_1.10_API = @FORCE_HDF_1_10_API@
++
+ libscihdf5_la_CPPFLAGS = -I$(srcdir)/includes/ \
+ -I$(srcdir)/src/c/ \
+ -I$(srcdir)/src/cpp/ \
+@@ -98,7 +100,8 @@ libscihdf5_la_CPPFLAGS = -I$(srcdir)/inc
+ $(JAVA_JNI_INCLUDE) \
+ $(HDF5_CFLAGS) \
+ $(AM_CPPFLAGS) \
+-$(FORCE_HDF_1.8_API)
++$(FORCE_HDF_1.8_API) \
++$(FORCE_HDF_1.10_API)
+ 
+ 
+ 
+Index: scilab-5.5.2/modules/hdf5/src/c/h5_readDataFromFile.c
+===
+--- scilab-5.5.2.orig/modules/hdf5/src/c/h5_readDataFromFile.c
 scilab-5.5.2/modules/hdf5/src/c/h5_readDataFromFile.c
+@@ -716,7 +716,11 @@ int readCommonPolyMatrix(int _iDatasetId
+ /*
+  * Open the referenced object, get its name and type.
+  */
+-obj = H5Rdereference(_iDatasetId, H5R_OBJECT, [i]);
++obj = H5Rdereference(_iDatasetId,
++#if H5_VERSION_GE(1,10,0)
++ H5P_DATASET_ACCESS_DEFAULT,
++#endif
++ H5R_OBJECT, [i]);
+ if (_iComplex)
+ {
+ status = readComplexPoly(obj, &_piNbCoef[i], &_pdblReal[i], &_pdblImg[i]);
+@@ -950,7 +954,11 @@ int readCommonSparseComplexMatrix(int _i
+ }
+ 
+ //read Row data
+-obj = H5Rdereference(_iDatasetId, H5R_OBJECT, [0]);
++obj = H5Rdereference(_iDatasetId,
++#if H5_VERSION_GE(1,10,0)
++ H5P_DATASET_ACCESS_DEFAULT,
++#endif
++ H5R_OBJECT, [0]);
+ status = readInteger32Matrix(obj, _piNbItemRow);
+ if (status < 0)
+ {
+@@ -958,7 +966,11 @@ int readCommonSparseComplexMatrix(int _i
+ }
+ 
+ //read cols data
+-obj 

Bug#841964: med-fichier: 3.0.6-10

[Gilles Filippini]

Source: med-fichier
Version: 3.0.6-10
Severity: important
Tags: patch

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Hi,

Please find attached a patch to support building against HDF5-1.10 currently in 
experimental. I intend to request a transition slot this week, and will NMU if 
need be.

Thanks,

_g.


- -- System Information:
Debian Release: stretch/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.6.0-1-amd64 (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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diff -Nru med-fichier-3.0.6/debian/changelog med-fichier-3.0.6/debian/changelog
--- med-fichier-3.0.6/debian/changelog	2016-09-04 20:06:34.0 +0200
+++ med-fichier-3.0.6/debian/changelog	2016-10-20 21:59:53.0 +0200
@@ -1,3 +1,11 @@
+med-fichier (3.0.6-10.1) unstable; urgency=medium
+
+  * Non-maintainer upload.
+  * New patch fix-fid-type-in-medequivinfo.patch to fix FTBFS with
+HDF5 1.10
+
+ -- Gilles Filippini   Thu, 20 Oct 2016 21:59:50 +0200
+
 med-fichier (3.0.6-10) unstable; urgency=medium
 
   * [f6af4e3] Fix autopkgtest.
diff -Nru med-fichier-3.0.6/debian/patches/fix-fid-type-in-medequivinfo.patch med-fichier-3.0.6/debian/patches/fix-fid-type-in-medequivinfo.patch
--- med-fichier-3.0.6/debian/patches/fix-fid-type-in-medequivinfo.patch	1970-01-01 01:00:00.0 +0100
+++ med-fichier-3.0.6/debian/patches/fix-fid-type-in-medequivinfo.patch	2016-10-20 21:58:54.0 +0200
@@ -0,0 +1,17 @@
+Description: fix wrong type for fid in MEDequivInfo
+ MEDequivInfo was previously declared in include/2.3.6/med_proto.h
+ with correct type for fid: med_idt.
+Author: Gilles Filippini 
+Index: med-fichier-3.0.6/src/2.3.6/ci/MEDequivInfo.c
+===
+--- med-fichier-3.0.6.orig/src/2.3.6/ci/MEDequivInfo.c
 med-fichier-3.0.6/src/2.3.6/ci/MEDequivInfo.c
+@@ -24,7 +24,7 @@
+ #include 
+ 
+ int
+-MEDequivInfo(int fid, char *maa, int ind, char *eq, char *des)
++MEDequivInfo(med_idt fid, char *maa, int ind, char *eq, char *des)
+ {
+   med_idt eqid;
+   med_err ret;
diff -Nru med-fichier-3.0.6/debian/patches/series med-fichier-3.0.6/debian/patches/series
--- med-fichier-3.0.6/debian/patches/series	2014-09-11 21:26:13.0 +0200
+++ med-fichier-3.0.6/debian/patches/series	2016-10-20 21:58:54.0 +0200
@@ -1,3 +1,4 @@
 ppc64el-support.patch
 hdf5_link.patch
 clang-ftbfs.diff
+fix-fid-type-in-medequivinfo.patch
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Processing of ucto_0.9.3-1_source.changes

[Debian FTP Masters]

ucto_0.9.3-1_source.changes uploaded successfully to localhost
along with the files:
  ucto_0.9.3-1.dsc
  ucto_0.9.3.orig.tar.gz
  ucto_0.9.3-1.debian.tar.xz

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Processed: Re: Bug#841885: gerris: autopkgtests fail with openmpi2

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> tags 841885 +pending +patch
Bug #841885 [src:gerris] gerris: autopkgtests fail with openmpi2
Added tag(s) pending.
Bug #841885 [src:gerris] gerris: autopkgtests fail with openmpi2
Added tag(s) patch.
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#841885: gerris: autopkgtests fail with openmpi2

[Anton Gladky]

tags 841885 +pending +patch
thanks

Hi Graham,

thanks for your fix. I have committed it and it will be fixed by the next
upload. Regarding your question of including those packages into
Depends section of gerris. As far as I know, it is possible to use
gerris without compiler and in a serial mode, so in this case those
packages are not really needed.

I may be wrong, CC-ing upstream author for a more qualified answer.

Thanks

Anton


2016-10-24 9:02 GMT+02:00 Graham Inggs :
> Source: gerris
> Version: 20131206+dfsg-9
>
> Hi Maintainer
>
> Since the transition to openmpi2, gerris' autopkgtests have been
> failing with the following error:
>
> orte_ess_init failed
> --> Returned value A system-required executable either could not be
> found or was not executable by this user (-126) instead of
> ORTE_SUCCESS
>
> I solved this by adding mpi-default-bin to debian/tests/control as follows:
>
> --- a/debian/tests/control
> +++ b/debian/tests/control
> @@ -1,2 +1,2 @@
>  Tests: testHydro testKinetic testPlate testQuadr
> -Depends: gerris, libgfs-dev, build-essential, pkg-config, mpi-default-dev
> +Depends: gerris, libgfs-dev, build-essential, pkg-config,
> mpi-default-dev, mpi-default-bin
>
> However, if the dependencies libgfs-dev, build-essential, pkg-config,
> mpi-default-dev and mpi-default-bin are actually needed for normal
> usage of gerris, then maybe they should rather be added to the gerris
> package's Depends in debian/control.
>
> Regards
> Graham
>
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Processed: Fixing the cernlib FTBFS will also rebuild the static libraries

[Debian Bug Tracking System]

Processing control commands:

> reassign 837711 src:cernlib
Bug #837711 [libmathlib2-dev] libmathlib2-dev: Please build libmathlib.a with 
-fPIC
Bug reassigned from package 'libmathlib2-dev' to 'src:cernlib'.
No longer marked as found in versions libmathlib2-dev/20061220+dfsg3-3.
Ignoring request to alter fixed versions of bug #837711 to the same values 
previously set
> forcemerge -1 837711
Bug #837657 [src:cernlib] cernlib: FTBFS with bindnow and PIE enabled
Bug #837711 [src:cernlib] libmathlib2-dev: Please build libmathlib.a with -fPIC
Removed indication that 837711 affects src:paw and paw
Marked as found in versions cernlib/20061220+dfsg3-4.2.
Merged 837657 837711
> affects -1 src:paw
Bug #837657 [src:cernlib] cernlib: FTBFS with bindnow and PIE enabled
Bug #837711 [src:cernlib] libmathlib2-dev: Please build libmathlib.a with -fPIC
Added indication that 837657 affects src:paw
Added indication that 837711 affects src:paw

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837711: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=837711
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Bug#837657: Fixing the cernlib FTBFS will also rebuild the static libraries

[Adrian Bunk]

Control: reassign 837711 src:cernlib
Control: forcemerge -1 837711
Control: affects -1 src:paw

Fixing the cernlib FTBFS will also rebuild the static libraries
with PIE, and a binNMU is anyways not possible before the FTBFS
is fixed.

cu
Adrian

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libmatio_1.5.9-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 22 Oct 2016 22:00:39 +0200
Source: libmatio
Binary: libmatio-dev libmatio4 libmatio-doc
Architecture: source
Version: 1.5.9-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sébastien Villemot 
Description:
 libmatio-dev - MAT File I/O Library - development files
 libmatio-doc - MAT File I/O Library - documentation files
 libmatio4  - Library to read and write Matlab MAT files
Changes:
 libmatio (1.5.9-1) unstable; urgency=medium
 .
   * New upstream version 1.5.9
   * Bump to debhelper compat level 10.
   * d/control: update package descriptions.
Checksums-Sha1:
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 aab5b4219a3c0262afe7eeb7bdd2f463 8520329 libs optional 
libmatio_1.5.9.orig.tar.gz
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Processing of libmatio_1.5.9-1_source.changes

[Debian FTP Masters]

libmatio_1.5.9-1_source.changes uploaded successfully to localhost
along with the files:
  libmatio_1.5.9-1.dsc
  libmatio_1.5.9.orig.tar.gz
  libmatio_1.5.9-1.debian.tar.xz

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fcl 0.5.0-5 MIGRATED to testing

[Debian testing watch]

FYI: The status of the fcl source package
in Debian's testing distribution has changed.

  Previous version: 0.5.0-4
  Current version:  0.5.0-5

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fplll 5.0.2-2 MIGRATED to testing

[Debian testing watch]

FYI: The status of the fplll source package
in Debian's testing distribution has changed.

  Previous version: 4.0.4-2
  Current version:  5.0.2-2

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Bug#837454: Patch from Ubuntu for the flint-arb PIE FTBFS

[Adrian Bunk]

Control: tags -1 +patch

The patch I found in Ubuntu for this bug is attached,

cu
Adrian

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   "Only a promise," Lao Er said.
   Pearl S. Buck - Dragon Seed

Description: invoke cc with just -r to fix FTBFS with PIE enabled
Author: Logan Rosen 
Forwarded: no
Last-Update: 2016-05-07 
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
--- a/Makefile.subdirs
+++ b/Makefile.subdirs
@@ -52,7 +52,7 @@
 	$(QUIET_CC) $(CC) $(CFLAGS) $(INCS) -c $< -o $@ -MMD -MP -MF "$(BUILD_DIR)/$(MOD_DIR)_$*.d" -MT "$(BUILD_DIR)/$(MOD_DIR)_$*.d" -MT "$@"
 
 $(MOD_LOBJ): $(LOBJS)
-	$(QUIET_CC) $(CC) $(ABI_FLAG) -Wl,-r $^ -o $@ -nostdlib
+	$(QUIET_CC) $(CC) $(ABI_FLAG) -r $^ -o $@ -nostdlib
 
 -include $(LOBJS:.lo=.d)
 
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Processed: Patch from Ubuntu for the flint-arb PIE FTBFS

[Debian Bug Tracking System]

Processing control commands:

> tags -1 +patch
Bug #837454 [src:flint-arb] flint-arb: FTBFS with bindnow and PIE enabled
Added tag(s) patch.

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Processing of gnuplot_5.0.5+dfsg1-2_source.changes

[Debian FTP Masters]

/gnuplot_5.0.5+dfsg1-2_source.changes couldn't be processed for 48 hours and is 
now deleted
All files it mentions are also removed:
  gnuplot_5.0.5+dfsg1-2.dsc, gnuplot_5.0.5+dfsg1.orig.tar.xz, 
gnuplot_5.0.5+dfsg1-2.debian.tar.xz

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ticcutils_0.14-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 18 Oct 2016 13:48:33 +0200
Source: ticcutils
Binary: libticcutils2-dev libticcutils2v5
Architecture: source
Version: 0.14-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Maarten van Gompel 
Description:
 libticcutils2-dev - library for TiCC software - development files
 libticcutils2v5 - library for TiCC software - runtime files
Changes:
 ticcutils (0.14-1) unstable; urgency=medium
 .
   * New upstream release
   * added myself as maintainer
   * debian/control: updated standards version
   * debian/compat: bumped to 10
   * debian/control: cleanup (whitespace),
 updated Vcs-Git, Vcs-Browser,
 removed old libticcutils1*install
   * debian/copyright: updated and reordered, tried to comply to DEP-5
   * multiple files: removed redundant comment on first line
 (Thanks to Mattia Rizzolo for pointing out most of the above)
Checksums-Sha1:
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Processing of ticcutils_0.14-1_source.changes

[Debian FTP Masters]

ticcutils_0.14-1_source.changes uploaded successfully to localhost
along with the files:
  ticcutils_0.14-1.dsc
  ticcutils_0.14.orig.tar.gz
  ticcutils_0.14-1.debian.tar.xz

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Bug#838112: marked as done (uctodata: fails to upgrade from 'jessie' - trying to overwrite /etc/ucto/es.abr)

[Debian Bug Tracking System]

Your message dated Mon, 24 Oct 2016 12:54:34 +
with message-id 
and subject line Bug#838112: fixed in uctodata 0.2-1
has caused the Debian Bug report #838112,
regarding uctodata: fails to upgrade from 'jessie' - trying to overwrite 
/etc/ucto/es.abr
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
838112: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=838112
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: uctodata
Version: 0.1.1-1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package fails to upgrade from
'jessie'.
It installed fine in 'jessie', then the upgrade to 'sid' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.

See policy 7.6 at
https://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces

>From the attached log (scroll to the bottom...):

  Selecting previously unselected package uctodata.
  Preparing to unpack .../uctodata_0.1.1-1_all.deb ...
  Unpacking uctodata (0.1.1-1) ...
  dpkg: error processing archive 
/var/cache/apt/archives/uctodata_0.1.1-1_all.deb (--unpack):
   trying to overwrite '/etc/ucto/es.abr', which is also in package ucto 
0.5.3-3.1+b1
  Errors were encountered while processing:
   /var/cache/apt/archives/uctodata_0.1.1-1_all.deb


cheers,

Andreas


ucto=0.5.3-3.1+b1_uctodata=0.1.1-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: uctodata
Source-Version: 0.2-1

We believe that the bug you reported is fixed in the latest version of
uctodata, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 838...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Maarten van Gompel  (supplier of updated uctodata package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 18 Oct 2016 14:25:00 +0200
Source: uctodata
Binary: uctodata
Architecture: source
Version: 0.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Maarten van Gompel 
Description:
 uctodata   - Data files for Ucto
Closes: 838112
Changes:
 uctodata (0.2-1) unstable; urgency=medium
 .
   * New upstream
   * debian/control: cleanup, whitespace
   * debian/control: bumped compat level/debhelper to 10,
 fixed Vcs-git, pointed to wrong package
   * debian/control: Added replaces+breaks for older
 pre-split ucto versions (Closes: #838112),
 thanks to Andreas Beckmann
   * debian/control: added Multi-Arch: foreign
   * debian/copyright: ordering fixes, symlink fix
   * d/uctodata.lintian-overrides: obsolete, removed
(Thanks to Mattia Rizzolo for pointing out most of the above)
Checksums-Sha1:
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Files:
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uctodata_0.2-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 18 Oct 2016 14:25:00 +0200
Source: uctodata
Binary: uctodata
Architecture: source
Version: 0.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Maarten van Gompel 
Description:
 uctodata   - Data files for Ucto
Closes: 838112
Changes:
 uctodata (0.2-1) unstable; urgency=medium
 .
   * New upstream
   * debian/control: cleanup, whitespace
   * debian/control: bumped compat level/debhelper to 10,
 fixed Vcs-git, pointed to wrong package
   * debian/control: Added replaces+breaks for older
 pre-split ucto versions (Closes: #838112),
 thanks to Andreas Beckmann
   * debian/control: added Multi-Arch: foreign
   * debian/copyright: ordering fixes, symlink fix
   * d/uctodata.lintian-overrides: obsolete, removed
(Thanks to Mattia Rizzolo for pointing out most of the above)
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libfolia_1.4-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Hash: SHA512

Format: 1.8
Date: Tue, 18 Oct 2016 11:24:00 +0200
Source: libfolia
Binary: libfolia-dev libfolia4
Architecture: source
Version: 1.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Maarten van Gompel 
Description:
 libfolia-dev - Implementation of the FoLiA document format (C++ headers)
 libfolia4  - Implementation of the FoLiA document format
Changes:
 libfolia (1.4-1) unstable; urgency=medium
 .
   * New upstream
   * debian/compat: bumped to 10
   * debian/control: cleanup (whitespace, ordering, descriptions),
 added Multi-Arch: same to dev package
   * debian/copyright: updated and reordered, tried to comply to DEP-5
   * multiple files: removed redundant comment on first line
 (Thanks to Mattia Rizzolo for pointing out most of the above)
Checksums-Sha1:
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Bug#779409: marked as done (herwig++: Illegal instruction on mips64el when Herwig++ run LHC.run -N500 -d1 -D)

[Debian Bug Tracking System]

Your message dated Mon, 24 Oct 2016 13:44:05 +0100
with message-id 
and subject line Bug#779409: herwig++: Illegal instruction on mips64el when 
Herwig++ run LHC.run -N500 -d1 -D
has caused the Debian Bug report #779409,
regarding herwig++: Illegal instruction on mips64el when Herwig++ run LHC.run 
-N500 -d1 -D
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
779409: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=779409
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: herwig++
Version: 2.6.0-1

(gdb) r run  LHC.run -N500 -d1 -D
Starting program: /home/syq/herwig++/herwig++-2.6.0/src/Herwig++ run
LHC.run -N500 -d1 -D
event> init
Program received signal SIGILL, Illegal instruction.
0x00fff74b9dd0 in gsl_sf_bessel_Kn_e (n=,
x=, result=0xff9758) at bessel_Kn.c:159
159   result->err += x * GSL_DBL_EPSILON * fabs(result->val);
(gdb) bt
#0  0x00fff74b9dd0 in gsl_sf_bessel_Kn_e (n=,
x=, result=0xff9758) at bessel_Kn.c:159
#1  0x00fff74ba190 in gsl_sf_bessel_Kn (n=,
x=) at bessel_Kn.c:239
#2  0x00fff574ab8c in Herwig::MPIHandler::OverlapFunction
(this=, b=..., mu2=...) at MPIHandler.cc:498
#3  0x00fff574b5b4 in Herwig::Eikonalization::operator()
(this=0xffa088, b=...) at MPIHandler.cc:398
#4  0x00fff574b834 in (anonymous
namespace)::integrand (x=,
p=) at
../include/Herwig++/Utilities/GSLIntegrator.tcc:33
#5  0x00fff73f87b0 in gsl_integration_qk (n=,
xgk=0xfff7558970 , wg=, wgk=0xfff75588f0 ,
fv1=0xff9ad8, fv2=0xff9b30, f=0xff9fe8,
a=, b=1.5811388300841895e-10, result=0xff9cb0,
abserr=0xff9cb8, resabs=0xff9cc0, resasc=0xff9cc8) at
qk.c:59
#6  0x00fff73f8318 in gsl_integration_qk21
(f=f@entry=0xff9fe8, a=, b=,
result=result@entry=0xff9cb0, abserr=abserr@entry=0xff9cb8,
resabs=resabs@entry=0xff9cc0,
resasc=resasc@entry=0xff9cc8) at qk21.c:76
#7  0x00fff73f9f84 in qags (f=0xff9fe8, a=,
b=, epsabs=, epsrel=,
limit=1000, workspace=0x1213c1af0, result=0xff9fd0,
abserr=abserr@entry=0xff9fd8, q=0xfff73f82a0
) at qags.c:245
#8  0x00fff73fb13c in gsl_integration_qags (f=,
a=, b=, epsabs=,
epsrel=, limit=, workspace=,
result=, abserr=0xff9fd8) at qags.c:46
#9  0x00fff5764cdc in
Herwig::GSLIntegrator::value
(this=0xffa060, fn=..., lower=..., upper=..., error=...) at
../include/Herwig++/Utilities/GSLIntegrator.tcc:81
#10 0x00fff575131c in value (upper=...,
lower=..., fn=..., this=0xffa060) at
../include/Herwig++/Utilities/GSLIntegrator.tcc:50
#11 Herwig::MPIHandler::totalXSecDiff (this=0x121085230, softXSec=...,
softMu2=...) at MPIHandler.cc:516
#12 0x00fff57513d8 in operator() (argument=..., this=) at MPIHandler.h:775
#13 (anonymous namespace)::func
(x=, p=) at
../include/Herwig++/Utilities/GSLBisection.tcc:24
#14 0x00fff74a0188 in brent_init (vstate=0x121352190,
f=0xffa180, root=, x_lower=,
x_upper=) at brent.c:57
#15 0x00fff5750f34 in value
(upper=..., lower=..., fn=..., this=) at
../include/Herwig++/Utilities/GSLBisection.tcc:60
#16 Herwig::slopeBisection::operator() (this=0xffa640,
softMu2=...) at MPIHandler.cc:433
#17 0x00fff57511c8 in (anonymous
namespace)::func (x=,
p=) at
../include/Herwig++/Utilities/GSLBisection.tcc:24
#18 0x00fff74a0188 in brent_init (vstate=0x121344590,
f=0xffa430, root=, x_lower=,
x_upper=) at brent.c:57
#19 0x00fff5753b9c in value (upper=...,
lower=..., fn=..., this=0xffa468) at
../include/Herwig++/Utilities/GSLBisection.tcc:60
#20 Herwig::MPIHandler::initialize (this=0x121085230) at MPIHandler.cc:168
#21 0x00fff5e19808 in Herwig::ShowerHandler::doinitrun
(this=0x121079da0) at ShowerHandler.cc:80
#22 0x00fff7c0f618 in ThePEG::InterfacedBase::initrun() () from
/usr/lib/mips64el-linux-gnuabi64/libThePEG.so.15
#23 0x00fff7c1b550 in std::mem_fun_t
std::for_each, std::mem_fun_t
>(std::_Rb_tree_const_iterator, std::_Rb_tree_const_iterator, std::mem_fun_t) () from
/usr/lib/mips64el-linux-gnuabi64/libThePEG.so.15
#24 0x00fff7c07058 in ThePEG::EventGenerator::doinitrun() () from
/usr/lib/mips64el-linux-gnuabi64/libThePEG.so.15
#25 0x00fff7bfd96c in ThePEG::EventGenerator::doInitialize() ()
from /usr/lib/mips64el-linux-gnuabi64/libThePEG.so.15
#26 0x00fff7bffe14 in ThePEG::EventGenerator::initialize() () from

Processing of uctodata_0.2-1_source.changes

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uctodata_0.2-1_source.changes uploaded successfully to localhost
along with the files:
  uctodata_0.2-1.dsc
  uctodata_0.2.orig.tar.gz
  uctodata_0.2-1.debian.tar.xz

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python-pynlpl_1.0.9-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Hash: SHA512

Format: 1.8
Date: Tue, 18 Oct 2016 12:22:00 +0200
Source: python-pynlpl
Binary: python-pynlpl python3-pynlpl
Architecture: source
Version: 1.0.9-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Maarten van Gompel 
Description:
 python-pynlpl - PyNLPl is a library for Natural Language Processing (Python 2 
ver
 python3-pynlpl - PyNLPl is a library for Natural Language Processing (Python 3 
ver
Changes:
 python-pynlpl (1.0.9-1) unstable; urgency=medium
 .
   * New upstream release (1.0.9)
   * debian/tests: fixed
   * debian/compat: changed to 10
   * debian/control: cleanup (whitespace, ordering, descriptions)
   * manpages/pynlpl-computepmi.1: spelling fix
   * debian/copyright: fixed order
(thanks to Mattia Rizzolo for pointing out most of the above)
Checksums-Sha1:
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python-pynlpl_1.0.9-1.dsc
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python-pynlpl_1.0.9.orig.tar.gz
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python-pynlpl_1.0.9-1.debian.tar.xz

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Processing of libfolia_1.4-1_source.changes

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libfolia_1.4-1_source.changes uploaded successfully to localhost
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Bug#841885: gerris: autopkgtests fail with openmpi2

[Graham Inggs]

Source: gerris
Version: 20131206+dfsg-9

Hi Maintainer

Since the transition to openmpi2, gerris' autopkgtests have been
failing with the following error:

orte_ess_init failed
--> Returned value A system-required executable either could not be
found or was not executable by this user (-126) instead of
ORTE_SUCCESS

I solved this by adding mpi-default-bin to debian/tests/control as follows:

--- a/debian/tests/control
+++ b/debian/tests/control
@@ -1,2 +1,2 @@
 Tests: testHydro testKinetic testPlate testQuadr
-Depends: gerris, libgfs-dev, build-essential, pkg-config, mpi-default-dev
+Depends: gerris, libgfs-dev, build-essential, pkg-config,
mpi-default-dev, mpi-default-bin

However, if the dependencies libgfs-dev, build-essential, pkg-config,
mpi-default-dev and mpi-default-bin are actually needed for normal
usage of gerris, then maybe they should rather be added to the gerris
package's Depends in debian/control.

Regards
Graham

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