Bug#841406: Fixed, verification in progress

[Roelof Berg]

Fixed. Next steps would be:

adt-run --unbuilt-tree=limereg --- null
git tag -s -a debian/1.4.1-1 -m "Release 1.4.1-1"
git push --all
git push --tag

But I have a: WARNING: 'automake-1.15' is missing on your system, so I 
cannot verify before creating the tag. Will move my development PC to 
SID, maybe there automake is more recent, would be cleaner anyway.


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Bug#842092: dh-r: Please provide variables known from cdbs helper for R packages

[Andreas Tille]

Hi,

I worked around the missing variables in the r-bioc-biocparallel
code by adding

debRreposname   := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}' | 
sed 's/r-\([a-z]\+\)-.*/\1/')
awkString   := "'/^(Package|Bundle):/ {print $$2 }'"
cranNameOrig:= $(shell awk "$(awkString)" DESCRIPTION)
cranName:= $(shell echo "$(cranNameOrig)" | tr A-Z a-z)
package := r-$(debRreposname)-$(cranName)
debRdir := usr/lib/R/site-library
debRlib := $(CURDIR)/debian/$(package)/$(debRdir)

to debian/rules.  Please note that the calculation of debRreposname
would be an enhancement over r-cran.mk since formerly you needed to
specify debRreposname if it was different from the default cran.

Please also note that I skipped some "if-else" statements to simplify
things - it would be safer to copy the code from r-cran.mk (and add
debRreposname code if you agree that this is more elegant).

BTW, I could even imagine that this kind of dh_fixperms becomes
unneeded at all since it makes probably sense to chmod -x all *.R
files in the package.  What do you think?

Kind regards

   Andreas.

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Bug#842092: dh-r: Please provide variables known from cdbs helper for R packages

[Andreas Tille]

Package: dh-r
Severity: wishlist

Hi,

I'm starting to convert some of my R packages from cdbs helper to dh-r.
When converting r-bioc-biocparallel I wanted to turn the code to fix the
permissions of a file into

override_dh_fixperms:
dh_fixperms
chmod -x $(debRlib)/$(cranNameOrig)/snow/RMPInode.R

Unfortunately the variables known from cdbs helper do not exist in dh-r.
I think it would increase the acceptance of dh-r if these would be
available and could be used in the manner above.

Kind regards and thanks for the great dh-r tool

 Andreas.


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Debian Release: 8.6
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.16.0-4-amd64 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
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Bug#842088: RM: r-cran-knitr [armel] -- ROM; Build-Dependency nodejs not available on armel

[Andreas Tille]

Package: ftp.debian.org
Severity: normal

Hi

according to buildd[1] the Build-Depends nodejs is not available on
armel any more.  Please remove r-cran-knitr for this architecture from
the archive.

Kind regards and thanks for your ftpmaster work

  Andreas.

[1] https://buildd.debian.org/status/package.php?p=r-cran-knitr

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Bug#841406: Ok

[Roelof Berg]

Ok, work in progress ... Thanks for reporting.

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Bug#842082: torch-core-free: uninstallable on architectures without lua-torch-image

[Andreas Beckmann]

Package: torch-core-free
Version: 1~exp1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package is not
installable in experimental on e.g. i386:

torch-core-free is an arch:any package depending on lua-torch-image
(which is arch:any, too), but lua-torch-image is not available on all
architectures where torch-core-free has been built.

I'd recommend adding a
  Build-Depends: lua-torch-image
to prevent building the package on architectures where it would not be
installable.


Cheers,

Andreas

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Processed: tagging 841511, found 810516 in 3.1.0+dfsg-1~exp2 ...

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> tags 841511 + stretch
Bug #841511 [python-bitbucket-api,python-bitbucket] python-bitbucket-api, 
python-bitbucket: error when trying to install together
Added tag(s) stretch.
> found 810516 3.1.0+dfsg-1~exp2
Bug #810516 [libopencv3.1-java] libopencv3.0-java: fails to upgrade from 'sid' 
- trying to overwrite /usr/share/java/opencv.jar
Marked as found in versions opencv/3.1.0+dfsg-1~exp2.
> retitle 810516 libopencv3.1-java: fails to upgrade from sid - trying to 
> overwrite /usr/share/java/opencv.jar
Bug #810516 [libopencv3.1-java] libopencv3.0-java: fails to upgrade from 'sid' 
- trying to overwrite /usr/share/java/opencv.jar
Changed Bug title to 'libopencv3.1-java: fails to upgrade from sid - trying to 
overwrite /usr/share/java/opencv.jar' from 'libopencv3.0-java: fails to upgrade 
from 'sid' - trying to overwrite /usr/share/java/opencv.jar'.
> thanks
Stopping processing here.

Please contact me if you need assistance.
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810516: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=810516
841511: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=841511
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Contact ow...@bugs.debian.org with problems

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r-cran-knitr REMOVED from testing

[Debian testing watch]

FYI: The status of the r-cran-knitr source package
in Debian's testing distribution has changed.

  Previous version: 1.12.3-1
  Current version:  (not in testing)
  Hint: (no removal hint found)

The script that generates this mail tries to extract removal
reasons from comments in the britney hint files. Those comments
were not originally meant to be machine readable, so if the
reason for removing your package seems to be nonsense, it is
probably the reporting script that got confused. Please check the
actual hints file before you complain about meaningless removals.

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ros-robot-model 1.12.4-2 MIGRATED to testing

[Debian testing watch]

FYI: The status of the ros-robot-model source package
in Debian's testing distribution has changed.

  Previous version: 1.12.4-1
  Current version:  1.12.4-2

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ceres-solver 1.12.0~rc1~dfsg0-1 MIGRATED to testing

[Debian testing watch]

FYI: The status of the ceres-solver source package
in Debian's testing distribution has changed.

  Previous version: 1.11.0+git20161003-1
  Current version:  1.12.0~rc1~dfsg0-1

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aweather REMOVED from testing

[Debian testing watch]

FYI: The status of the aweather source package
in Debian's testing distribution has changed.

  Previous version: 0.8.1-1
  Current version:  (not in testing)
  Hint: (no removal hint found)

The script that generates this mail tries to extract removal
reasons from comments in the britney hint files. Those comments
were not originally meant to be machine readable, so if the
reason for removing your package seems to be nonsense, it is
probably the reporting script that got confused. Please check the
actual hints file before you complain about meaningless removals.

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Bug#841885: gerris: autopkgtests fail with openmpi2

[Graham Inggs]

On 25 October 2016 at 17:32, Anton Gladky  wrote:
> feel free to commit directly to git.

Thanks, I will do!

When I looked previously, I thought the git hadn't been updated since
2014-03-23:
https://anonscm.debian.org/cgit/debian-science/packages/gerris.git

But now I see that is the debian-unstable branch, not the master branch.

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Bug#841885: gerris: autopkgtests fail with openmpi2

[Anton Gladky]

Hi Graham,

feel free to commit directly to git.

@Stephane, thanks for the info. Could you please test and review current
packaged gerris in Debian before it will be freezed soon?

Best regards

Anton


2016-10-25 9:58 GMT+02:00 Graham Inggs :
> On 24 October 2016 at 21:46, Anton Gladky  wrote:
>> thanks for your fix. I have committed it and it will be fixed by the next
>> upload.
>
> Thanks! There's no hurry for the next upload.
> In Ubuntu, I'm still seeing autopkgtests fail, but only on s390x, with
> the following message:
>
> The value of the MCA parameter "plm_rsh_agent" was set to a path
> that could not be found:
>
>   plm_rsh_agent: ssh : rsh
>
> We might need to put back:
>
> export OMPI_MCA_plm_rsh_agent=/bin/false
>
> But I will investigate further and reply to this bug.

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dh-r_20160916_amd64.changes ACCEPTED into unstable, unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 16 Sep 2016 11:25:42 +0200
Source: dh-r
Binary: dh-r
Architecture: source all
Version: 20160916
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Gordon Ball 
Description:
 dh-r   - Debian helper tools for packaging R libraries
Closes: 837953
Changes:
 dh-r (20160916) unstable; urgency=medium
 .
   * Initial release (closes: #837953)
Checksums-Sha1:
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Bug#841885: gerris: autopkgtests fail with openmpi2

[Graham Inggs]

On 24 October 2016 at 21:46, Anton Gladky  wrote:
> thanks for your fix. I have committed it and it will be fixed by the next
> upload.

Thanks! There's no hurry for the next upload.
In Ubuntu, I'm still seeing autopkgtests fail, but only on s390x, with
the following message:

The value of the MCA parameter "plm_rsh_agent" was set to a path
that could not be found:

  plm_rsh_agent: ssh : rsh

We might need to put back:

export OMPI_MCA_plm_rsh_agent=/bin/false

But I will investigate further and reply to this bug.

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Bug#841885: gerris: autopkgtests fail with openmpi2

[Stephane Popinet]

Hi Anton, Graham,

First of all, thanks a lot for your work packaging Gerris for Debian. 
Gerris can indeed be used without build-essential etc.. however its 
functionalities will be severly limited, so I think that these 
dependencies should be included by default.


cheers

Stephane

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ucto_0.9.3-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Format: 1.8
Date: Tue, 18 Oct 2016 14:29:00 +0200
Source: ucto
Binary: ucto libucto-dev libucto2
Architecture: source
Version: 0.9.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Maarten van Gompel 
Description:
 libucto-dev - Unicode Tokenizer - development
 libucto2   - Unicode Tokenizer - runtime
 ucto   - Unicode Tokenizer
Changes:
 ucto (0.9.3-1) unstable; urgency=medium
 .
   * Updated to new upstream (0.9.3)
   * Updated dependencies to latest version
   * d/compat: bumped to 10
   * d/control: debhelper >= 10
   * d/control: cleanup (whitespace, ordering)
   * d/control: Vcs urls use https now
   * d/control: added multiarch same
   * d/control: disambiguated long descriptions
   * d/copyright: fixed ordering, fixed symlink
   * (Thanks to Mattia Rizzolo for pointing out most of the above)
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