glm 0.9.8.4-1 MIGRATED to testing

[Debian testing watch]

FYI: The status of the glm source package
in Debian's testing distribution has changed.

  Previous version: 0.9.8.3-3
  Current version:  0.9.8.4-1

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cminpack 1.3.6-1 MIGRATED to testing

[Debian testing watch]

FYI: The status of the cminpack source package
in Debian's testing distribution has changed.

  Previous version: 1.3.4-4
  Current version:  1.3.6-1

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cimg 1.7.9+dfsg-2 MIGRATED to testing

[Debian testing watch]

FYI: The status of the cimg source package
in Debian's testing distribution has changed.

  Previous version: 1.7.9+dfsg-1
  Current version:  1.7.9+dfsg-2

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scilab is marked for autoremoval from testing

[Debian testing autoremoval watch]

scilab 5.5.2-4 is marked for autoremoval from testing on 2017-08-05

It is affected by these RC bugs:
865522: scilab: Segmentation fault at lauch


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sciscipy is marked for autoremoval from testing

[Debian testing autoremoval watch]

sciscipy 1.0.1-2 is marked for autoremoval from testing on 2017-08-05

It (build-)depends on packages with these RC bugs:
865522: scilab: Segmentation fault at lauch


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scilab-plotlib is marked for autoremoval from testing

[Debian testing autoremoval watch]

scilab-plotlib 0.42-1 is marked for autoremoval from testing on 2017-08-05

It (build-)depends on packages with these RC bugs:
865522: scilab: Segmentation fault at lauch


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scilab-ann is marked for autoremoval from testing

[Debian testing autoremoval watch]

scilab-ann 0.4.2.4-1 is marked for autoremoval from testing on 2017-08-05

It (build-)depends on packages with these RC bugs:
865522: scilab: Segmentation fault at lauch


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scilab-celestlab is marked for autoremoval from testing

[Debian testing autoremoval watch]

scilab-celestlab 3.0.0-1-2 is marked for autoremoval from testing on 2017-08-05

It (build-)depends on packages with these RC bugs:
865522: scilab: Segmentation fault at lauch


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Bug#865526: closed by Gianfranco Costamagna <locutusofb...@debian.org> (Re: libpetsc3.7.5-dev: uninstallable on current sid)

[Adrian Bunk]

Control: reopen -1

On Thu, Jun 29, 2017 at 03:24:06PM +, Debian Bug Tracking System wrote:
> Date: Thu, 29 Jun 2017 17:21:34 +0200
> From: Gianfranco Costamagna 
> To: 865526-d...@bugs.debian.org
> Subject: Re: libpetsc3.7.5-dev: uninstallable on current sid
> 
> 
> > since openmpi was upgraded in sid, libpetsc3.7.5-dev and libpetsc3.7.6-dev
> > became uninstallable on sid, since they depend on libopenmpi-dev (< 2.0.3).
> > I tried compiling the package from source but it gets stuck precisely when
> > checking mpi. Upon further checking it looks like the openmpi development
> > environment on my laptop is broken, despite all packages appear to be
> > correctly installed: many libs are installed only under 
> > /usr/lib/x86_64-linux-gnu/openmpi/lib, with no soft links to 
> > /usr/lib/x86_64-linux-gnu (even if running dpkg -L libopenmpi2 says they
> > should be!).
> > 
> > Any chance to have petsc-dev installable again soon?  petsc and slepc are
> > key dependencies of my quite a bit of my home-developed scientific 
> > software. 
> > Any suggestion for a quick-n-dirty fix to get it to compile with the newer
> > openmpi?
> 
> if you want it being installable, just stop using sid.
> sid is meant for transitions, so stuff is uninstallable from time to time.
>...

No disagreement on that, but why did you close the bug?

This is a release critical bug that should stay open until it is fixed 
in sid.

> G.


cu
Adrian

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Processed: Re: Bug#865526 closed by Gianfranco Costamagna <locutusofb...@debian.org> (Re: libpetsc3.7.5-dev: uninstallable on current sid)

[Debian Bug Tracking System]

Processing control commands:

> reopen -1
Bug #865526 {Done: Gianfranco Costamagna } 
[libpetsc3.7.5-dev] libpetsc3.7.5-dev: uninstallable on current sid
Bug reopened
Ignoring request to alter fixed versions of bug #865526 to the same values 
previously set

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Bug#865253: marked as done (Please update dependencies from latex-xcolor to tl-latex-recommended)

[Debian Bug Tracking System]

Your message dated Thu, 29 Jun 2017 23:37:48 +
with message-id 
and subject line Bug#865253: fixed in sketch 1:0.3.7-3
has caused the Debian Bug report #865253,
regarding Please update dependencies from latex-xcolor to tl-latex-recommended
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
865253: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=865253
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: sketch
Version: 1:0.3.7-2
Severity: serious
Justification: FTBFS
X-Debbugs-CC: debian-tex-ma...@lists.debian.org

Dear maintainer,

latex-xcolor has been a dummy transitional package now since 2 releases
(since oldstable), and has been dropped in current unstable.

Please update your dependencies to texlive-latex-recommended.

Thanks

Norbert
--- End Message ---
--- Begin Message ---
Source: sketch
Source-Version: 1:0.3.7-3

We believe that the bug you reported is fixed in the latest version of
sketch, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 865...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
David Bremner  (supplier of updated sketch package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Hash: SHA256

Format: 1.8
Date: Thu, 29 Jun 2017 20:06:26 -0300
Source: sketch
Binary: sketch sketch-doc
Architecture: source
Version: 1:0.3.7-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: David Bremner 
Description:
 sketch - 3D diagrams for TeX from scene description language
 sketch-doc - Extra documentation for the sketch 3D line drawing system
Closes: 865253
Changes:
 sketch (1:0.3.7-3) unstable; urgency=medium
 .
   * Drop build-dep on no-longer present/needed texlive-xcolor, thanks to
 norb...@preining.info for reporting; (Closes: #865253).
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sketch_0.3.7-3_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 29 Jun 2017 20:06:26 -0300
Source: sketch
Binary: sketch sketch-doc
Architecture: source
Version: 1:0.3.7-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: David Bremner 
Description:
 sketch - 3D diagrams for TeX from scene description language
 sketch-doc - Extra documentation for the sketch 3D line drawing system
Closes: 865253
Changes:
 sketch (1:0.3.7-3) unstable; urgency=medium
 .
   * Drop build-dep on no-longer present/needed texlive-xcolor, thanks to
 norb...@preining.info for reporting; (Closes: #865253).
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Processing of sketch_0.3.7-3_source.changes

[Debian FTP Masters]

sketch_0.3.7-3_source.changes uploaded successfully to localhost
along with the files:
  sketch_0.3.7-3.dsc
  sketch_0.3.7-3.debian.tar.xz
  sketch_0.3.7-3_amd64.buildinfo

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xmds2_2.2.3+dfsg-2_amd64.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 29 Jun 2017 17:48:08 -0300
Source: xmds2
Binary: xmds2 xmds2-doc
Architecture: source all
Version: 2.2.3+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Rafael Laboissiere 
Description:
 xmds2  - eXtensible Multi-Dimensional Simulator
 xmds2-doc  - documentation for the eXtensible Multi-Dimensional Simulator
Changes:
 xmds2 (2.2.3+dfsg-2) unstable; urgency=medium
 .
   * d/copyright: Use secure URL in Format
   * d/watch: Upgrade to version 4
   * d/control: Bump Standards-Version to 4.0.0 (no changes needed)
   * Ensure reproducible build
 + d/fix-cheetah-build-str.py: New script for replacing
   timestamp and build paths generated by Cheetah
 + d/control: Build-depends on python-debian and python-dateutil
 + d/rules: Call fix-cheetah-build-str.py in the
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Votre système de quota de webmail

[Webmail Admin]

Votre système de quota de webmail dépassera bientôt sa limite de stockage 
Créé par l'administrateur, à cause des fichiers cachés dans votre boîte aux 
lettres, vous utilisez 23 Go. Vous ne pouvez pas envoyer ou recevoir de 
nouveaux messages avant de vérifier votre compte. 

Pour valider votre boîte aux lettres, CLIQUEZ ICI 

Si vous ne parvenez pas à compléter le questionnaire du lien, votre compte sera 
inactif dans les prochaines 24 heures. Veuillez considérer ce message comme 
important 

HelpDesk de Helpmail de Webmail 


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Processing of xmds2_2.2.3+dfsg-2_amd64.changes

[Debian FTP Masters]

xmds2_2.2.3+dfsg-2_amd64.changes uploaded successfully to localhost
along with the files:
  xmds2_2.2.3+dfsg-2.dsc
  xmds2_2.2.3+dfsg-2.debian.tar.xz
  xmds2-doc_2.2.3+dfsg-2_all.deb
  xmds2_2.2.3+dfsg-2_all.deb
  xmds2_2.2.3+dfsg-2_amd64.buildinfo

Greetings,

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Bug#855078: giac: FTBFS: [algo.pdf] Error 139 (Segmentation fault)

[Edmund Grimley Evans]

This robopatch seems to fix the problem on arm64 with 48-bit addresses:

perl -i -pe 's/longlong/ulonglong/g if /\(\s*longlong.*(<<|>>)/ &&
!/gen\(longlong/;' src/*.cc

The idea is to change the type whenever there seems to be a cast
followed by a shift. The last condition is to avoid a couple of
harmful false positives.

For easier maintenance you might want to move the code that packs and
unpacks addresses into one place rather than have it scattered all
over the place.

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Processed: tagging 866509

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> tags 866509 + pending
Bug #866509 [src:openblas] openblas: Please enable on sparc64
Added tag(s) pending.
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#866509: openblas: Please enable on sparc64

[James Clarke]

Source: openblas
Version: 0.2.19-3
Tags: patch
User: debian-sp...@lists.debian.org
Usertags: sparc64
X-Debbugs-Cc: debian-sp...@lists.debian.org

Hi,
The upstream code supports 64-bit SPARC; please apply the attached
debdiff to enable the build.

Regards,
James
diff -Nru openblas-0.2.19/debian/control openblas-0.2.19/debian/control
--- openblas-0.2.19/debian/control  2017-01-23 14:09:05.0 +
+++ openblas-0.2.19/debian/control  2017-06-29 17:16:00.0 +0100
@@ -12,7 +12,7 @@

 Package: libopenblas-base
 Section: libs
-Architecture: amd64 arm64 armhf i386 powerpc ppc64el ppc64 kfreebsd-i386 
kfreebsd-amd64 mips64el
+Architecture: amd64 arm64 armhf i386 powerpc ppc64el ppc64 kfreebsd-i386 
kfreebsd-amd64 mips64el sparc64
 Depends: ${shlibs:Depends}, ${misc:Depends}, libblas-common
 Provides: libblas.so.3, liblapack.so.3
 Built-Using: ${Built-Using}
@@ -29,7 +29,7 @@

 Package: libopenblas-dev
 Section: libdevel
-Architecture: amd64 arm64 armhf i386 powerpc ppc64el ppc64 kfreebsd-i386 
kfreebsd-amd64 mips64el
+Architecture: amd64 arm64 armhf i386 powerpc ppc64el ppc64 kfreebsd-i386 
kfreebsd-amd64 mips64el sparc64
 Depends: libopenblas-base (= ${binary:Version}), libblas-dev, 
${shlibs:Depends},
  ${misc:Depends}
 Provides: libblas.so, liblapack.so
diff -Nru openblas-0.2.19/debian/rules openblas-0.2.19/debian/rules
--- openblas-0.2.19/debian/rules2017-01-23 14:11:43.0 +
+++ openblas-0.2.19/debian/rules2017-06-29 17:16:00.0 +0100
@@ -48,6 +48,10 @@
GENERIC_OPTIONS += TARGET=POWER8
 endif

+ifeq ($(DEB_HOST_ARCH),sparc64)
+   GENERIC_OPTIONS += TARGET=SPARC
+endif
+
 # The testsuite crashes on PowerPC. Disable it by pretending we are
 # cross-compiling.
 ifeq ($(DEB_HOST_ARCH),powerpc)
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Bug#866508: sagemath: sage fail at starting with: ImportError: No module named 'sage'

[Gilles Crèvecœur]

Package: sagemath
Version: 7.6-2
Severity: grave
Justification: renders package unusable

Dear Maintainer,

When I try to start sage it show this message :
┌┐
│ SageMath version 7.6, Release Date: 2017-03-25 │
│ Type "notebook()" for the browser-based notebook interface.│
│ Type "help()" for help.│
└┘
Traceback (most recent call last):
  File "/usr/share/sagemath/bin/sage-ipython", line 7, in 
from sage.repl.interpreter import SageTerminalApp
ImportError: No module named 'sage'

I don't know how to fix this. Notice that similar message appears
when i try "sage --notebook".

Cheers.



-- System Information:
Debian Release: buster/sid
  APT prefers unstable
  APT policy: (900, 'unstable'), (100, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.8.15-e1 (SMP w/2 CPU cores; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr 
(charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages sagemath depends on:
ii  cysignals-tools  1.3.2+ds-1
ii  cython   0.25.2-1
ii  ecl  16.1.2-2
ii  eclib-tools  20170330-1
ii  f2c  20100827-3
ii  fflas-ffpack 2.2.2-4
ii  flintqs  1:1.0-1+b1
ii  gap-core 4r8p6-2
ii  gfan 0.5+dfsg-6
ii  gmp-ecm  7.0.4+ds-1
ii  ipython  5.1.0-3
ii  iso-codes3.75-1
ii  jmol 14.6.4+2016.11.05+dfsg1-3
ii  lcalc1.23+dfsg-6+b1
ii  less 481-2.1
ii  libatlas3-base [liblapack.so.3]  3.10.3-1+b1
ii  libblas3 [libblas.so.3]  3.7.0-2
ii  libbrial-groebner0   0.8.5-4
ii  libbrial00.8.5-4
ii  libc62.24-12
ii  libcdd-tools 094h-1+b1
ii  libcliquer1  1.21-1+b2
ii  libec3   20170330-1
ii  libecm1  7.0.4+ds-1
ii  libflint-2.5.2   2.5.2-15
ii  libflint-arb12.8.1-3
ii  libgap-sage-44.8.6+3+20160327g69a66f0+dsx-2
ii  libgcc1  1:7.1.0-7
ii  libgd3   2.2.4-2
ii  libgivaro9   4.0.2-5
ii  libglpk404.62-1
ii  libgmp10 2:6.1.2+dfsg-1
ii  libgmpxx4ldbl2:6.1.2+dfsg-1
ii  libgsl2  2.3+dfsg-1
ii  libiml0  1.0.4-1+b2
ii  libjs-mathjax2.7.0-2
ii  libjs-three  80+dfsg2-1
ii  liblapack3 [liblapack.so.3]  3.7.0-2
ii  liblfunction01.23+dfsg-6+b1
ii  liblinbox-1.4.2-01.4.2-3
ii  liblinboxsage-1.4.2-01.4.2-3
ii  liblrcalc1   1.2-2+b1
ii  libm4ri-0.0.20140914 20140914-2+b1
ii  libm4rie-0.0.2015090820150908-1
ii  libmpc3  1.0.3-1+b2
ii  libmpfi0 1.5.1+ds-4
ii  libmpfr4 3.1.5-1
ii  libntl27 9.9.1-3
ii  libopenblas-base [liblapack.so.3]0.2.19-3
ii  libpari-gmp-tls5 2.9.1-1
ii  libplanarity03.0.0.5-1+b1
ii  libpng16-16  1.6.29-3
ii  libppl14 1:1.2-1
ii  libpynac10   0.7.5-2
ii  libratpoints-2.1.3   1:2.1.3-1+b2
ii  libreadline7 7.0-3
ii  librw0   0.8+ds-1
ii  libsingular4 1:4.1.0-p3+ds-2
ii  libsingular4-dev 1:4.1.0-p3+ds-2
ii  libstdc++6   7.1.0-7
ii  libsymmetrica2   2.0+ds-4
ii  libzn-poly-0.9   0.9-3+b2
ii  maxima-sage  

Bug#866501: yade: depends on obsolete python-imaging (replace with python3-pil or python-pil)

[Matthias Klose]

Package: src:yade
Version: 2017.01a-8
Severity: important
Tags: sid buster
User: d...@debian.org
Usertags: imaging-pillow

One or more binary packages built from this source depends on or
recommends python-imaging, which is obsolete for some years now.
Please build the source using the python-pil package. If your
package doesn't need to be built with Python2, please consider using
Python3 and depend on python3-pil.

Planning to remove python-imaging for the buster release, so the
severity of this issues might be raised.

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Bug#866495: woo: depends on obsolete python-imaging (replace with python3-pil or python-pil)

[Matthias Klose]

Package: src:woo
Version: 1.0+dfsg1-1
Severity: important
Tags: sid buster
User: d...@debian.org
Usertags: imaging-pillow

One or more binary packages built from this source depends on or
recommends python-imaging, which is obsolete for some years now.
Please build the source using the python-pil package. If your
package doesn't need to be built with Python2, please consider using
Python3 and depend on python3-pil.

Planning to remove python-imaging for the buster release, so the
severity of this issues might be raised.

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Bug#866484: sympy: depends on obsolete python-imaging (replace with python3-pil or python-pil)

[Matthias Klose]

Package: src:sympy
Version: 1.0-3
Severity: important
Tags: sid buster
User: d...@debian.org
Usertags: imaging-pillow

One or more binary packages built from this source depends on or
recommends python-imaging, which is obsolete for some years now.
Please build the source using the python-pil package. If your
package doesn't need to be built with Python2, please consider using
Python3 and depend on python3-pil.

Planning to remove python-imaging for the buster release, so the
severity of this issues might be raised.

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Bug#866480: skimage: depends on obsolete python-imaging (replace with python3-pil or python-pil)

[Matthias Klose]

Package: src:skimage
Version: 0.12.3-9
Severity: important
Tags: sid buster
User: d...@debian.org
Usertags: imaging-pillow

One or more binary packages built from this source depends on or
recommends python-imaging, which is obsolete for some years now.
Please build the source using the python-pil package. If your
package doesn't need to be built with Python2, please consider using
Python3 and depend on python3-pil.

Planning to remove python-imaging for the buster release, so the
severity of this issues might be raised.

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Bug#866465: python-fabio: depends on obsolete python-imaging (replace with python3-pil or python-pil)

[Matthias Klose]

Package: src:python-fabio
Version: 0.4.0+dfsg-2
Severity: important
Tags: sid buster
User: d...@debian.org
Usertags: imaging-pillow

One or more binary packages built from this source depends on or
recommends python-imaging, which is obsolete for some years now.
Please build the source using the python-pil package. If your
package doesn't need to be built with Python2, please consider using
Python3 and depend on python3-pil.

Planning to remove python-imaging for the buster release, so the
severity of this issues might be raised.

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Bug#866460: pyfai: depends on obsolete python-imaging (replace with python3-pil or python-pil)

[Matthias Klose]

Package: src:pyfai
Version: 0.13.0+dfsg-1
Severity: important
Tags: sid buster
User: d...@debian.org
Usertags: imaging-pillow

One or more binary packages built from this source depends on or
recommends python-imaging, which is obsolete for some years now.
Please build the source using the python-pil package. If your
package doesn't need to be built with Python2, please consider using
Python3 and depend on python3-pil.

Planning to remove python-imaging for the buster release, so the
severity of this issues might be raised.

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Bug#866435: ipe-tools: depends on obsolete python-imaging (replace with python3-pil or python-pil)

[Matthias Klose]

Package: src:ipe-tools
Version: 20150406-3
Severity: important
Tags: sid buster
User: d...@debian.org
Usertags: imaging-pillow

One or more binary packages built from this source depends on or
recommends python-imaging, which is obsolete for some years now.
Please build the source using the python-pil package. If your
package doesn't need to be built with Python2, please consider using
Python3 and depend on python3-pil.

Planning to remove python-imaging for the buster release, so the
severity of this issues might be raised.

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Bug#866430: guiqwt: depends on obsolete python-imaging (replace with python3-pil or python-pil)

[Matthias Klose]

Package: src:guiqwt
Version: 3.0.3-1
Severity: important
Tags: sid buster
User: d...@debian.org
Usertags: imaging-pillow

One or more binary packages built from this source depends on or
recommends python-imaging, which is obsolete for some years now.
Please build the source using the python-pil package. If your
package doesn't need to be built with Python2, please consider using
Python3 and depend on python3-pil.

Planning to remove python-imaging for the buster release, so the
severity of this issues might be raised.

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❤Re: how are you?

[Mathieu Malaterre]

Dear, 


Just writing  to ask  how are you doing and to to  show you something really 
cool,  just take a look http://bit.do/dxPjE

Mathieu Malaterre

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Bug#865526: marked as done (libpetsc3.7.5-dev: uninstallable on current sid)

[Debian Bug Tracking System]

Your message dated Thu, 29 Jun 2017 17:21:34 +0200
with message-id 
and subject line Re: libpetsc3.7.5-dev: uninstallable on current sid
has caused the Debian Bug report #865526,
regarding libpetsc3.7.5-dev: uninstallable on current sid
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
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Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libpetsc3.7.5-dev
Version: 3.7.5+dfsg1-4+b1
Severity: grave
Justification: renders package unusable

Dear Maintainer,

since openmpi was upgraded in sid, libpetsc3.7.5-dev and libpetsc3.7.6-dev
became uninstallable on sid, since they depend on libopenmpi-dev (< 2.0.3).
I tried compiling the package from source but it gets stuck precisely when
checking mpi. Upon further checking it looks like the openmpi development
environment on my laptop is broken, despite all packages appear to be
correctly installed: many libs are installed only under 
/usr/lib/x86_64-linux-gnu/openmpi/lib, with no soft links to 
/usr/lib/x86_64-linux-gnu (even if running dpkg -L libopenmpi2 says they
should be!).

Any chance to have petsc-dev installable again soon?  petsc and slepc are
key dependencies of my quite a bit of my home-developed scientific software. 
Any suggestion for a quick-n-dirty fix to get it to compile with the newer
openmpi?

Thanks in advance. I'll let you know if/when I can compile a working petsc
package from source.

Bye
Giacomo

-- System Information:
Debian Release: 9.0
  APT prefers buildd-unstable
  APT policy: (400, 'buildd-unstable'), (401, 'unstable'), (10, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.9.25-jak (SMP w/4 CPU cores)
Locale: LANG=it_IT.utf8, LC_CTYPE=it_IT.utf8 (charmap=UTF-8) (ignored: LC_ALL 
set to it_IT.utf8), LANGUAGE=it_IT.utf8 (charmap=UTF-8) (ignored: LC_ALL set to 
it_IT.utf8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages libpetsc3.7.5-dev depends on:
ii  gfortran  4:6.3.0-4
ii  libblacs-mpi-dev  1.1-40
ii  libfftw3-dev  3.3.6p2-1
ii  libfftw3-mpi-dev  3.3.6p2-1
ii  libhdf5-mpi-dev   1.10.0-patch1+docs-3
ii  libhypre-dev  2.11.1-3
ii  libmumps-dev  4.10.0.dfsg-4+b2
ii  libopenmpi-dev2.1.1-4
ii  libpetsc3.7.5 3.7.5+dfsg1-4+b1
ii  libptscotch-dev   5.1.12b.dfsg-2.1
ii  libscalapack-mpi-dev  1.8.0-14
ii  libspooles-dev2.2-12+b1
ii  libssl-dev1.1.0f-3
ii  libsuitesparse-dev1:4.5.5-1
ii  libsuperlu-dev5.2.1+dfsg1-2
ii  python2.7.13-2

Versions of packages libpetsc3.7.5-dev recommends:
ii  csh [c-shell]   20110502-2.2+b1
ii  ksh 93u+20120801-3.1
ii  mksh54-2+b4
ii  tcsh [c-shell]  6.20.00-7
ii  zsh 5.3.1-5

Versions of packages libpetsc3.7.5-dev suggests:
pn  libluminate-dev
pn  libpetsc3.7.5-dbg  
pn  petsc-dev  
ii  petsc3.7.5-doc 3.7.5+dfsg1-4
--- End Message ---
--- Begin Message ---

> since openmpi was upgraded in sid, libpetsc3.7.5-dev and libpetsc3.7.6-dev
> became uninstallable on sid, since they depend on libopenmpi-dev (< 2.0.3).
> I tried compiling the package from source but it gets stuck precisely when
> checking mpi. Upon further checking it looks like the openmpi development
> environment on my laptop is broken, despite all packages appear to be
> correctly installed: many libs are installed only under 
> /usr/lib/x86_64-linux-gnu/openmpi/lib, with no soft links to 
> /usr/lib/x86_64-linux-gnu (even if running dpkg -L libopenmpi2 says they
> should be!).
> 
> Any chance to have petsc-dev installable again soon?  petsc and slepc are
> key dependencies of my quite a bit of my home-developed scientific software. 
> Any suggestion for a quick-n-dirty fix to get it to compile with the newer
> openmpi?

if you want it being installable, just stop using sid.
sid is meant for transitions, so stuff is uninstallable from time to time.

You can email release team if you want openmpi to migrate faster

G.



signature.asc
Description: OpenPGP digital signature
--- End Message ---
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Bug#866166: sagemath: FTBFS with Sphinx 1.5: AttributeError: 'BuildEnvironment' object has no attribute 'citations'

[Tobias Hansen]

On 06/28/2017 04:03 PM, Dmitry Shachnev wrote:
> Hi Tobias, and thanks for the quick response!
>
> On Wed, Jun 28, 2017 at 02:44:23PM +0100, Tobias Hansen wrote:
>> Hi Dmitry,
>>
>> would it be an option to upload sphinx 1.5 to unstable together with
>> sagemath 8.0 (which works fine with sphinx 1.5) or do you want to do it
>> before? We plan to upload sagemath 8.0 to unstable when it's released
>> (they are at beta12 now).
> That depends on how long do you estimate the final release to take.
>
> From what I found [1] the sage-8.0 milestone still has 341 active issues,
> which does not sound very optimistic.
>
> I can wait for 2 or 3 weeks, but I do not want to wait longer. After all
> upstream already released Sphinx 1.6 so we are two major releases behind.
>
>> Otherwise it's a matter of backporting commits from sagemath 8.0 to 7.6.
> I think this is not enough, unless the second part of my bugreport is also
> addressed upstream.
>
> [1]: https://trac.sagemath.org/milestone/sage-8.0
>
> --
> Dmitry Shachnev


Ok, we should fix this then. The sage 8.0 package build actually stops
before dh_sphinxdoc currently (at override_dh_auto_install), so I don't
know yet if we have the same problem there.

Best,

Tobias

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Hi..

[Alanna Samuel]

Thanks dear,
Is Alanna expecting your urgent answer.
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opencv_3.2.0+dfsg-1~exp1_amd64.changes is NEW

[Debian FTP Masters]

binary:libopencv-calib3d3.2 is NEW.
binary:libopencv-contrib3.2 is NEW.
binary:libopencv-core3.2 is NEW.
binary:libopencv-features2d3.2 is NEW.
binary:libopencv-flann3.2 is NEW.
binary:libopencv-highgui3.2 is NEW.
binary:libopencv-imgcodecs3.2 is NEW.
binary:libopencv-imgproc3.2 is NEW.
binary:libopencv-ml3.2 is NEW.
binary:libopencv-objdetect3.2 is NEW.
binary:libopencv-photo3.2 is NEW.
binary:libopencv-shape3.2 is NEW.
binary:libopencv-stitching3.2 is NEW.
binary:libopencv-superres3.2 is NEW.
binary:libopencv-video3.2 is NEW.
binary:libopencv-videoio3.2 is NEW.
binary:libopencv-videostab3.2 is NEW.
binary:libopencv-viz3.2 is NEW.
binary:libopencv3.2-java is NEW.
binary:libopencv3.2-jni is NEW.
binary:libopencv-calib3d3.2 is NEW.
binary:libopencv3.2-java is NEW.
binary:libopencv-ml3.2 is NEW.
binary:libopencv-imgcodecs3.2 is NEW.
binary:libopencv-viz3.2 is NEW.
binary:libopencv-highgui3.2 is NEW.
binary:libopencv-features2d3.2 is NEW.
binary:libopencv3.2-jni is NEW.
binary:libopencv-shape3.2 is NEW.
binary:libopencv-stitching3.2 is NEW.
binary:libopencv-imgproc3.2 is NEW.
binary:libopencv-photo3.2 is NEW.
binary:libopencv-video3.2 is NEW.
binary:libopencv-videoio3.2 is NEW.
binary:libopencv-videostab3.2 is NEW.
binary:libopencv-contrib3.2 is NEW.
binary:libopencv-core3.2 is NEW.
binary:libopencv-superres3.2 is NEW.
binary:libopencv-objdetect3.2 is NEW.
binary:libopencv-flann3.2 is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html
 or https://ftp-master.debian.org/backports-new.html for *-backports

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Bug#855078: giac: FTBFS: [algo.pdf] Error 139 (Segmentation fault)

[Edmund Grimley Evans]

So giac was supposed to be working now on arm64, but it failed on the buildd:

https://buildd.debian.org/status/package.php?p=giac=sid

Having recently seen something similar I think I can guess what's happening.

User virtual addresses on Linux arm64 may have 39, 42 or 48 bits,
depending on how the kernel is configured:

https://www.kernel.org/doc/Documentation/arm64/memory.txt

It seems that giac now works with the smaller virtual addresses, but
fails on the buildd, which uses 48-bit addresses. According to the
comment in src/gen.h, SMARTPTR64 should handle 48-bit addresses, but
up to now it has probably only been tested on amd64, which uses 47-bit
addresses. A problem with the top bit? Sign extension perhaps?

Sure enough, in src/gen.cc there is code like this:

#ifdef SMARTPTR64
  (*((longlong *) ) >> 16)

I suspect that the fix will be to replace some of those longlong with ulonglong.

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Processing of opencv_3.2.0+dfsg-1~exp1_amd64.changes

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opencv_3.2.0+dfsg-1~exp1_amd64.changes uploaded successfully to localhost
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  opencv_3.2.0+dfsg-1~exp1.dsc
  opencv_3.2.0+dfsg.orig.tar.gz
  opencv_3.2.0+dfsg-1~exp1.debian.tar.xz
  libopencv-calib3d-dev_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-calib3d3.2-dbgsym_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-calib3d3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-contrib-dev_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-contrib3.2-dbgsym_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-contrib3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-core-dev_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-core3.2-dbgsym_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-core3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-dev-dbgsym_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-dev_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-features2d-dev_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-features2d3.2-dbgsym_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-features2d3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-flann-dev_3.2.0+dfsg-1~exp1_amd64.deb
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  libopencv-flann3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-highgui-dev_3.2.0+dfsg-1~exp1_amd64.deb
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  libopencv-highgui3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-imgcodecs-dev_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-imgcodecs3.2-dbgsym_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-imgcodecs3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-imgproc-dev_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-imgproc3.2-dbgsym_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-imgproc3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-ml-dev_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-ml3.2-dbgsym_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-ml3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-objdetect-dev_3.2.0+dfsg-1~exp1_amd64.deb
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  libopencv-photo-dev_3.2.0+dfsg-1~exp1_amd64.deb
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  libopencv-photo3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-shape-dev_3.2.0+dfsg-1~exp1_amd64.deb
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  libopencv-shape3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-stitching-dev_3.2.0+dfsg-1~exp1_amd64.deb
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  libopencv-superres-dev_3.2.0+dfsg-1~exp1_amd64.deb
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  libopencv-superres3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-ts-dev_3.2.0+dfsg-1~exp1_amd64.deb
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  libopencv-videoio-dev_3.2.0+dfsg-1~exp1_amd64.deb
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  libopencv-videoio3.2_3.2.0+dfsg-1~exp1_amd64.deb
  libopencv-videostab-dev_3.2.0+dfsg-1~exp1_amd64.deb
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  libopencv3.2-java_3.2.0+dfsg-1~exp1_all.deb
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  opencv-data_3.2.0+dfsg-1~exp1_all.deb
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