taurus REMOVED from testing

2018-01-02 Thread Debian testing watch 
FYI: The status of the taurus source package
in Debian's testing distribution has changed.

  Previous version: 4.0.3+dfsg-1
  Current version:  (not in testing)
  Hint: 
Bug #876921: python-pint FTBFS with python-numpy 1.13.1: test failures
# in python-pint

The script that generates this mail tries to extract removal
reasons from comments in the britney hint files. Those comments
were not originally meant to be machine readable, so if the
reason for removing your package seems to be nonsense, it is
probably the reporting script that got confused. Please check the
actual hints file before you complain about meaningless removals.

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keras is marked for autoremoval from testing

2018-01-02 Thread Debian testing autoremoval watch 
keras 2.1.1-1 is marked for autoremoval from testing on 2018-02-01

It (build-)depends on packages with these RC bugs:
884294: pandas: pandas FTBFS: test failure


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plplot 5.13.0+dfsg-7 MIGRATED to testing

2018-01-02 Thread Debian testing watch 
FYI: The status of the plplot source package
in Debian's testing distribution has changed.

  Previous version: 5.10.0+dfsg2-0.4
  Current version:  5.13.0+dfsg-7

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coin3 3.1.4~abc9f50+dfsg3-2 MIGRATED to testing

2018-01-02 Thread Debian testing watch 
FYI: The status of the coin3 source package
in Debian's testing distribution has changed.

  Previous version: 3.1.4~abc9f50+dfsg1-2
  Current version:  3.1.4~abc9f50+dfsg3-2

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xmds2 2.2.3+dfsg-4 MIGRATED to testing

2018-01-02 Thread Debian testing watch 
FYI: The status of the xmds2 source package
in Debian's testing distribution has changed.

  Previous version: 2.2.3+dfsg-3
  Current version:  2.2.3+dfsg-4

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Bug#885644: QScintilla2 Transition Started

2018-01-02 Thread Scott Kitterman 
Now that qscintilla2 2.10.2 is in unstable, your package no longer builds, so 
I've just raised the bug to severity serious.  If you haven't already, please 
let me know if you intend to upload, otherwise I'll NMU in the next few days.

Scott K

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Processed: severity of 885644 is serious

2018-01-02 Thread Debian Bug Tracking System 
Processing commands for cont...@bugs.debian.org:

> severity 885644 serious
Bug #885644 [src:ovito] src:ovito: Configure failure with new qscintilla2 in 
experimental
Severity set to 'serious' from 'wishlist'
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#858228: marked as done (dolfin: PETSc and SCOTCH support disabled on kfreebsd)

2018-01-02 Thread Debian Bug Tracking System 
Your message dated Wed, 03 Jan 2018 11:02:18 +1100
with message-id <1514937738.2966.30.ca...@debian.org>
and subject line Re: Bug#858228: dolfin: PETSc and SCOTCH support disabled on 
kfreebsd
has caused the Debian Bug report #858228,
regarding dolfin: PETSc and SCOTCH support disabled on kfreebsd
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: dolfin
Version: 2016.2.0-3
Severity: normal

petsc and slepc are available on kfreebsd.  But dolfin configuration
is unable to activate their support due to a linking error during
configuration tests.  SCOTCH support also fails. A snippet from the
log gives:

  -- Checking for package 'PETSc'
  -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") 
  -- Checking for one of the modules 'craypetsc_real;PETSc'
  -- Test PETSC_TEST_RUNS with shared library linking - Failed
  -- Test PETSC_TEST_RUNS static linking - Failed
  -- Check size of PetscInt
  -- Check size of PetscInt - done
  -- PETSc could not be found. Be sure to set PETSC_DIR. (missing:  
PETSC_TEST_RUNS) (found suitable version "3.7.5", minimum required is "3.6")
  -- Checking for package 'SCOTCH-PT'
  -- Found SCOTCH (version 5.1.1.12)
  -- Performing test SCOTCH_TEST_RUNS
  -- Performing test SCOTCH_TEST_RUNS - Failed
  -- Found ZLIB: /usr/lib/x86_64-kfreebsd-gnu/libz.so (found version "1.2.8") 
  -- Performing test SCOTCH_ZLIB_TEST_RUNS
  -- Performing test SCOTCH_ZLIB_TEST_RUNS - Failed
  -- SCOTCH could not be found. Be sure to set SCOTCH_DIR. (missing:  
SCOTCH_TEST_RUNS) 

I think the petsc error comes from /CMakeFiles/petsc_test_lib.cpp
It does successfully link manually, for instance with 
  gcc `pkg-config --cflags --libs PETSc mpi` petsc_test_lib.cpp
mpi is needed here due to the use of ompi_mpi_comm_self in
libpetsc_real.so.

Does dolfin's cmake/modules/FindPETSc.cmake need any adjustments in
order to successfully configure PETSc support on kfreebsd? 
(likewise FindSCOTCH.cmake ?)


-- System Information:
Debian Release: 9.0
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.9.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
--- End Message ---
--- Begin Message ---
On Mon, 20 Mar 2017 12:13:53 +0800 Drew Parsons 
wrote:
> 
> petsc and slepc are available on kfreebsd.  But dolfin configuration
> is unable to activate their support due to a linking error during
> configuration tests.  SCOTCH support also fails. 

Unfortunately Debian isn't able to continue support for kfreebsd, see
https://lists.debian.org/debian-bsd/2017/12/msg8.html

This makes it impractical to test builds of dolfin on kfreebsd.

We'll have to consider kfreebsd unsupported now, so I'm closing this
bug.

Sorry, kfreebsd users.

Drew--- End Message ---
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Bug#886141: visp: FTBFS on mips: six tests time out

2018-01-02 Thread Aaron M. Ucko 
Source: visp
Version: 3.1.0-1
Severity: serious
Tags: upstream
Justification: fails to build from source (but built successfully in the past)
User: debian-m...@lists.debian.org
Usertags: mips

Builds of visp for mips have been failing lately.  Part of the problem
is that all 12 mbtGenericTrackingDepth tests generally fail on
big-endian architectures, as I just reported (#886140).  On top of
that, six tests timed out on this specific architecture, as detailed at
https://buildd.debian.org/status/fetch.php?pkg=visp=mips=3.1.0-1=1514685910=0:

  2 - testConversion (Timeout)
 23 - testMatrix (Timeout)
 27 - testMatrixPseudoInverse (Timeout)
 60 - testImgproc (Timeout)
 80 - testKeyPoint-5 (Timeout)
 81 - testKeyPoint-6 (Timeout)

Could you please take a look?

Thanks!

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Bug#886140: visp: FTBFS (big-endian): mbtGenericTrackingDepth tests fail

2018-01-02 Thread Aaron M. Ucko 
Source: visp
Version: 3.1.0-1
Severity: serious
Tags: upstream
Justification: fails to build from source (but built successfully in the past)
User: debian-m...@lists.debian.org
Usertags: mips

Builds of visp for big-endian architectures have been failing lately,
with errors in all 12 mbtGenericTrackingDepth tests.  The details vary
to some extent by architecture, but I suspect the root cause is the
same.  Specifically:

* On the 32-bit big-endian architectures mips and powerpc[*], these
  tests all fail with

terminate called after throwing an instance of 'std::bad_array_new_length'
  what():  std::bad_array_new_length

  which CTest reports as OTHER_FAULT.  (The mips build also
  encountered six other test failures, which I'll report separately.
  As for m68k[*], that build nominally succeeded only because builds
  there generally run with nocheck in DEB_BUILD_OPTIONS.)

* On s390x, these tests all encountered segmentation faults.

* On ppc64[*], these tests all failed with an unspecified "Exception:
  Other".

Could you please take a look?

Thanks!

[*] Admittedly not a release architecture.

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Bug#885569: marked as done (suitesparse: libgraphblasdemo underlinked)

2018-01-02 Thread Debian Bug Tracking System 
Your message dated Tue, 02 Jan 2018 13:50:07 +
with message-id 
and subject line Bug#885569: fixed in suitesparse 1:5.1.2~beta2-1
has caused the Debian Bug report #885569,
regarding suitesparse: libgraphblasdemo underlinked
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
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Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: suitesparse
Version: 1:5.1.0-1
Tags: patch

Hi Sébastien

Suitesparse fails to build in Ubuntu where everything is linked with
-Wl,--as-needed by default.

[ 50%] Linking C executable simple_demo
/usr/bin/cmake -E cmake_link_script
CMakeFiles/simple_demo.dir/link.txt --verbose=1
/usr/bin/cc -std=c11 -lm -fopenmp -g -O2
-fdebug-prefix-map=/<>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
-Wl,-Bsymbolic-functions -Wl,-z,relro -L/<>/lib -rdynamic
CMakeFiles/simple_demo.dir/Demo/Program/simple_demo.c.o  -o
simple_demo -Wl,-rpath,"/<>/GraphBLAS/build"
libgraphblasdemo.so libgraphblas.so.1.1.2
libgraphblasdemo.so: undefined reference to `cabs'
libgraphblasdemo.so: undefined reference to `atan2'
collect2: error: ld returned 1 exit status

The attached patch links libgraphblasdemo with libm and fixes the
build in Ubuntu.
Please consider applying it, it should be a no-op in Debian.

Also, consider adding the following line to debian/rules:

export DEB_LDFLAGS_MAINT_APPEND=-Wl,--as-needed

It should  eliminate all the "package could avoid a useless
dependency" warnings from dpkg-shlibdeps.

Regards
Graham


as-needed.debdiff
Description: Binary data
--- End Message ---
--- Begin Message ---
Source: suitesparse
Source-Version: 1:5.1.2~beta2-1

We believe that the bug you reported is fixed in the latest version of
suitesparse, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 885...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sébastien Villemot  (supplier of updated suitesparse 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 02 Jan 2018 14:04:44 +0100
Source: suitesparse
Binary: libamd2 libbtf1 libcamd2 libcolamd2 libccolamd2 libcholmod3 
libcxsparse3 libklu1 libldl2 libumfpack5 librbio2 libspqr2 libgraphblas1 
libsuitesparseconfig5 libsuitesparse-dev libsuitesparse-doc
Architecture: source
Version: 1:5.1.2~beta2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sébastien Villemot 
Description:
 libamd2- approximate minimum degree ordering library for sparse matrices
 libbtf1- permutation to block triangular form library for sparse matrices
 libcamd2   - symmetric approximate minimum degree library for sparse matrices
 libccolamd2 - constrained column approximate library for sparse matrices
 libcholmod3 - sparse Cholesky factorization library for sparse matrices
 libcolamd2 - column approximate minimum degree ordering library for sparse mat
 libcxsparse3 - concise sparse matrix library
 libgraphblas1 - graph algorithms via sparse matrix operations on semirings
 libklu1- circuit simulation sparse LU factorization library
 libldl2- simple LDL' factorization library for sparse matrices
 librbio2   - read/write sparse matrices in Rutherford/Boeing format
 libspqr2   - sparse QR factorization library
 libsuitesparse-dev - libraries for sparse matrices computations (development 
files)
 libsuitesparse-doc - libraries for sparse matrices computations (documentation)
 libsuitesparseconfig5 - configuration routines for all SuiteSparse modules
 libumfpack5 - sparse LU factorization library
Closes: 885569
Changes:
 suitesparse (1:5.1.2~beta2-1) unstable; urgency=medium
 .
   * New upstream version 5.1.2~beta2
 + libgraphblasdemo now linked against libm. (Closes: #885569)
   * Bump Standards-Version to 4.1.3.
Checksums-Sha1:
 285edd3043e3d5064ecab8de05ba55f7e99a2d71 2966 suitesparse_5.1.2~beta2-1.dsc
 af65bb4f2eca7d0787fe0cb875c759d1ec3a70e9 45063055 
suitesparse_5.1.2~beta2.orig.tar.gz

suitesparse_5.1.2~beta2-1_source.changes ACCEPTED into unstable

2018-01-02 Thread Debian FTP Masters 


Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 02 Jan 2018 14:04:44 +0100
Source: suitesparse
Binary: libamd2 libbtf1 libcamd2 libcolamd2 libccolamd2 libcholmod3 
libcxsparse3 libklu1 libldl2 libumfpack5 librbio2 libspqr2 libgraphblas1 
libsuitesparseconfig5 libsuitesparse-dev libsuitesparse-doc
Architecture: source
Version: 1:5.1.2~beta2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sébastien Villemot 
Description:
 libamd2- approximate minimum degree ordering library for sparse matrices
 libbtf1- permutation to block triangular form library for sparse matrices
 libcamd2   - symmetric approximate minimum degree library for sparse matrices
 libccolamd2 - constrained column approximate library for sparse matrices
 libcholmod3 - sparse Cholesky factorization library for sparse matrices
 libcolamd2 - column approximate minimum degree ordering library for sparse mat
 libcxsparse3 - concise sparse matrix library
 libgraphblas1 - graph algorithms via sparse matrix operations on semirings
 libklu1- circuit simulation sparse LU factorization library
 libldl2- simple LDL' factorization library for sparse matrices
 librbio2   - read/write sparse matrices in Rutherford/Boeing format
 libspqr2   - sparse QR factorization library
 libsuitesparse-dev - libraries for sparse matrices computations (development 
files)
 libsuitesparse-doc - libraries for sparse matrices computations (documentation)
 libsuitesparseconfig5 - configuration routines for all SuiteSparse modules
 libumfpack5 - sparse LU factorization library
Closes: 885569
Changes:
 suitesparse (1:5.1.2~beta2-1) unstable; urgency=medium
 .
   * New upstream version 5.1.2~beta2
 + libgraphblasdemo now linked against libm. (Closes: #885569)
   * Bump Standards-Version to 4.1.3.
Checksums-Sha1:
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suitesparse_5.1.2~beta2-1_amd64.buildinfo
Files:
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suitesparse_5.1.2~beta2-1.dsc
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suitesparse_5.1.2~beta2.orig.tar.gz
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suitesparse_5.1.2~beta2-1.debian.tar.xz
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Thank you for your contribution to Debian.

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Processing of suitesparse_5.1.2~beta2-1_source.changes

2018-01-02 Thread Debian FTP Masters 
suitesparse_5.1.2~beta2-1_source.changes uploaded successfully to localhost
along with the files:
  suitesparse_5.1.2~beta2-1.dsc
  suitesparse_5.1.2~beta2.orig.tar.gz
  suitesparse_5.1.2~beta2-1.debian.tar.xz
  suitesparse_5.1.2~beta2-1_amd64.buildinfo

Greetings,

Your Debian queue daemon (running on host usper.debian.org)

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Processed: Re: cypari2: please make the build reproducible

2018-01-02 Thread Debian Bug Tracking System 
Processing commands for cont...@bugs.debian.org:

> tags 885873 + fixed-upstream
Bug #885873 [src:cypari2] cypari2: please make the build reproducible
Added tag(s) fixed-upstream.
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#885873: cypari2: please make the build reproducible

2018-01-02 Thread Chris Lamb 
tags 885873 + fixed-upstream
thanks

Merged upstream :)


Regards,

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