Accepted keras 2.1.5-2 (source all) into unstable

[Daniel Stender]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 27 Mar 2018 17:39:30 +0200
Source: keras
Binary: python3-keras keras-doc
Architecture: source all
Version: 2.1.5-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Daniel Stender <sten...@debian.org>
Description:
 keras-doc  - CPU/GPU math expression compiler for Python (docs)
 python3-keras - deep learning framework running on Theano or TensorFlow
Changes:
 keras (2.1.5-2) unstable; urgency=medium
 .
   * Team upload.
   * debian/tests:
 + add python3-distutils to Depends
   * debian/control:
 + add python3-distutils to Depends
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Accepted bcolz 1.2.0+ds1-1 (all source) into unstable

[Daniel Stender]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 24 Mar 2018 11:31:55 +0100
Source: bcolz
Binary: python-bcolz python3-bcolz bcolz-doc
Architecture: all source
Version: 1.2.0+ds1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Daniel Stender <sten...@debian.org>
Closes: 893692
Description: 
 bcolz-doc  - high performant compressed data container (documentation)
 python3-bcolz - high performant compressed data container based on NumPy 
(Python
 python-bcolz - high performant compressed data container based on NumPy (Python
Changes:
 bcolz (1.2.0+ds1-1) unstable; urgency=medium
 .
   * New upstream release.
   * drop fix-tests.patch (fixed upstream).
   * deb/rules: don't hardcode pybuild build path (Closes: #893692).
   * deb/control: use magic tilde for dh-python build-dep.
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Files: 
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 c38408dc966f3ffa94f477526095dcfa 370552 science optional 
bcolz_1.2.0+ds1.orig.tar.xz
 c6c2b733443db2b266224f112e5ff534 5532 science optional 
bcolz_1.2.0+ds1-1.debian.tar.xz
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bcolz-doc_1.2.0+ds1-1_all.deb

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Accepted bcolz 1.1.2+ds1-1 (all source) into unstable

[Daniel Stender]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 24 Mar 2018 09:02:12 +0100
Source: bcolz
Binary: python-bcolz python3-bcolz bcolz-doc
Architecture: all source
Version: 1.1.2+ds1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Daniel Stender <sten...@debian.org>
Closes: 893273
Description: 
 bcolz-doc  - high performant compressed data container (documentation)
 python3-bcolz - high performant compressed data container based on NumPy 
(Python
 python-bcolz - high performant compressed data container based on NumPy (Python
Changes:
 bcolz (1.1.2+ds1-1) unstable; urgency=medium
 .
   * New upstream release.
   * deb/control:
 + add version to dh-python build-dep.
   * deb/copyright:
 + add some files from LICENSES/ and version.py to excludes.
   * deb/gbp.conf:
 + update debian-branch (debian/master according to DEP-14).
   * deb/rules:
 + update path for copying extensions into bcolz/ for docs.
   * add fix-tests.patch (Closes: #893273).
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bcolz_1.1.2+ds1.orig.tar.xz
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bcolz_1.1.2+ds1-1.debian.tar.xz
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bcolz-doc_1.1.2+ds1-1_all.deb

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Bug#893273: bcolz: FTBFS and Debci failure

[Daniel Stender]

A couple of failures like this also with 1.1.2/blosc 1.14.2:


==
FAIL: test01b (bcolz.tests.test_carray.bloscFiltersTest)
Testing all available filters in big arrays (bcolz.defaults)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 2322, in test01b
"carray does not seem to compress at all")
AssertionError: carray does not seem to compress at all

==
FAIL: test01c (bcolz.tests.test_carray.bloscFiltersTest)
Testing all available filters in big arrays (context)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 2344, in test01c
self.assertTrue(bcolz.defaults.cparams['shuffle'] == bcolz.SHUFFLE)
AssertionError: False is not true

==
FAIL: test01b (bcolz.tests.test_carray.filtersDiskTest)
Testing all available filters in big arrays (bcolz.defaults)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 2322, in test01b
"carray does not seem to compress at all")
AssertionError: carray does not seem to compress at all

==
FAIL: test01c (bcolz.tests.test_carray.filtersDiskTest)
Testing all available filters in big arrays (context)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 2344, in test01c
self.assertTrue(bcolz.defaults.cparams['shuffle'] == bcolz.SHUFFLE)
AssertionError: False is not true

==
FAIL: test01a (bcolz.tests.test_carray.filtersMemoryTest)
Testing all available filters in big arrays (setdefaults)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 2302, in test01a
"carray does not seem to compress at all")
AssertionError: carray does not seem to compress at all

==
FAIL: test01b (bcolz.tests.test_carray.filtersMemoryTest)
Testing all available filters in big arrays (bcolz.defaults)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 2322, in test01b
"carray does not seem to compress at all")
AssertionError: carray does not seem to compress at all

==
FAIL: test01c (bcolz.tests.test_carray.filtersMemoryTest)
Testing all available filters in big arrays (context)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 2344, in test01c
self.assertTrue(bcolz.defaults.cparams['shuffle'] == bcolz.SHUFFLE)
AssertionError: False is not true

==
FAIL: test01 (bcolz.tests.test_carray.miscDiskTest)
Testing __sizeof__() (big carrays)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 639, in test01
"carray does not seem to compress at all")
AssertionError: carray does not seem to compress at all

==
FAIL: test01 (bcolz.tests.test_carray.miscMemoryTest)
Testing __sizeof__() (big carrays)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 639, in test01
"carray does not seem to compress at all")
AssertionError: carray does not seem to compress at all

==
FAIL: test_repr_disk_array_append (bcolz.tests.test_carray.reprDiskTest)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 2430, in test_repr_disk_array_append
self.assertEqual(expected, repr(y))
AssertionError: "carray((0,), float64)\n  nbytes := 0; cbytes := 16.00 KB; ratio: 0.00\n  
cparams := cparams(clevel=5, shuffle=1, cname='blosclz', quantize=0)\n  chunklen := 2048; 
chunksize: 16384; blocksize: 0\n  rootdir := '/tmp/bcolz-reprDiskTestDqkqDw'\n  mode:= 
'a'\n[]" != "carray((0,), float64)\n  nbytes := 0; cbytes := 16.00 KB; ratio: 0.00\n  
cparams := cparams(clevel=9, shuffle=0, cname='blosclz', quantize=0)\n  chunklen := 2048; 
chunksize: 16384; blocksize: 0\n  rootdir := 

Accepted keras 2.1.5-1 (source all) into unstable

[Daniel Stender]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Mon, 19 Mar 2018 22:33:51 +0100
Source: keras
Binary: python3-keras keras-doc
Architecture: source all
Version: 2.1.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Daniel Stender <sten...@debian.org>
Description:
 keras-doc  - CPU/GPU math expression compiler for Python (docs)
 python3-keras - deep learning framework running on Theano or TensorFlow
Changes:
 keras (2.1.5-1) unstable; urgency=medium
 .
   * Team upload.
   [ Stephen Sinclair ]
   * New upstream version 2.1.5.
   * patches:
 + Update mkdocs.yml patch to match new repo_url
   * debian/rules:
 + Exclude test_topology.py (requires Tensorflow)
 + imagenet_utils_test.py was listed twice
 + test_documentation.py tries to load Tensorflow
 + convolutional_test.py internal failure
 + test_callbacks.py tries to load Tensorflow
 + test_datasets.py moved to tests/integration_tests
   * debian/control:
 + build-dep python3-nose, required by test_model_saving.py
 + build-dep python3-pydot, required by vis_utils_test.py
 + update Vcs-Git and Vcs-Browser to salsa.
 + update to Debian standards 4.1.3 (no changes required)
 + update debhelper to 11
   * debian/copyright:
 + Update github URL to keras-team/keras
 + Update year to 2018
   * debian/tests:
 + python3-theano-cpu, input datatype changed to array
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 db26f6e0789caeca91207a570e245b98aea1b232cfe2b0cebbe8966d1ea9124b 213096 
python3-keras_2.1.5-1_all.deb
Files:
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 3cdcdcf8c9c76d6a5c6936a9a2e48b8e 356936 science optional 
keras_2.1.5.orig.tar.xz
 59d64d18679e406a4a14fc4ceb65982f 134016 science optional 
keras_2.1.5-1.debian.tar.xz
 d6ce5f291651213354c7cd0b56c9584d 960960 doc optional keras-doc_2.1.5-1_all.deb
 68fdacb6b5f4743349a23a9124080a5c 9073 science optional 
keras_2.1.5-1_amd64.buildinfo
 f49e59d79e3a2149f326b734120494ea 213096 python optional 
python3-keras_2.1.5-1_all.deb

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Accepted scoop 0.7.1.1-2 (source all) into unstable

[Daniel Stender]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 20 Feb 2018 15:07:26 +0100
Source: scoop
Binary: python-scoop python3-scoop scoop-doc
Architecture: source all
Version: 0.7.1.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian QA Group <packa...@qa.debian.org>
Changed-By: Daniel Stender <sten...@debian.org>
Description:
 python-scoop - Python library for concurrent parallel programming
 python3-scoop - Python3 library for concurrent parallel programming
 scoop-doc  - Python library for concurrent parallel programming (docs)
Changes:
 scoop (0.7.1.1-2) unstable; urgency=medium
 .
   * Orphan package.
   * deb/control: update Vcs fields (moved to salsa).
Checksums-Sha1:
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 c11594f09e5e55ea7d55fdee71810a703402a31f 45816 python3-scoop_0.7.1.1-2_all.deb
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Checksums-Sha256:
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scoop_0.7.1.1-2.dsc
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scoop_0.7.1.1-2.debian.tar.xz
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python-scoop_0.7.1.1-2_all.deb
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python3-scoop_0.7.1.1-2_all.deb
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 334759c1002dc4783ca1a83615f27b92da686c23a7d1b9b220a656b7c7c01513 10349 
scoop_0.7.1.1-2_amd64.buildinfo
Files:
 75e0cb2ff9f2012e4bb1c45ed08deca4 2299 science optional scoop_0.7.1.1-2.dsc
 4cf9bcfa225092129da7eb42273199b4 6384 science optional 
scoop_0.7.1.1-2.debian.tar.xz
 0a6affc52844ce99344c74b6eccb0a2e 45724 python optional 
python-scoop_0.7.1.1-2_all.deb
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python3-scoop_0.7.1.1-2_all.deb
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scoop-doc_0.7.1.1-2_all.deb
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scoop_0.7.1.1-2_amd64.buildinfo

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Accepted numba 0.34.0-3 (source all amd64) into unstable

[Daniel Stender]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 20 Feb 2018 14:22:25 +0100
Source: numba
Binary: python-numba python3-numba numba-doc
Architecture: source all amd64
Version: 0.34.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Daniel Stender <sten...@debian.org>
Description:
 numba-doc  - native machine code compiler for Python (docs)
 python-numba - native machine code compiler for Python 2
 python3-numba - native machine code compiler for Python 3
Changes:
 numba (0.34.0-3) unstable; urgency=medium
 .
   * deb/control:
 + bump standards version to 4.1.3 (no further changes needed).
 + update Vcs fields (moved to salsa).
 + add funcsigs and singledispatch to runtime deps of py2 binary.
 + add archs to Suggests of nvidia-cuda-toolkit.
   * deb/copyright:
 + expand copyright span.
 + replace full license text of CC0-1.0 with short text and pointer
   to /usr/share/common-licenses.
   * deb/gbp.conf:
 + drop import-orig section header.
 + change debian branch to debian/master.
 + add sign-tags set to True.
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numba_0.34.0-3.dsc
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python3-numba_0.34.0-3_amd64.deb
Files:
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 ace1b8e10395d545278cf2fecdde87cf 6616 science optional 
numba_0.34.0-3.debian.tar.xz
 105e2a4a4d76c8eaab58c17b8cbecc8c 642296 doc optional numba-doc_0.34.0-3_all.deb
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numba_0.34.0-3_amd64.buildinfo
 cf145b150bfaa336afbf8af8adc2386d 416844 debug optional 
python-numba-dbgsym_0.34.0-3_amd64.deb
 f58c85f55d61def1d0e305386ceeaedb 908288 python optional 
python-numba_0.34.0-3_amd64.deb
 127b72d433265f6c6b6f52dc72315ba9 441072 debug optional 
python3-numba-dbgsym_0.34.0-3_amd64.deb
 6c8e08caa6fe3616458aee4357b51b6c 907900 python optional 
python3-numba_0.34.0-3_amd64.deb

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Accepted bcolz 1.1.0+ds1-5 (source all amd64) into unstable

[Daniel Stender]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Tue, 20 Feb 2018 09:24:01 +0100
Source: bcolz
Binary: python-bcolz python3-bcolz bcolz-doc
Architecture: source all amd64
Version: 1.1.0+ds1-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Daniel Stender <sten...@debian.org>
Description:
 bcolz-doc  - high performant compressed data container (documentation)
 python-bcolz - high performant compressed data container based on NumPy (Python
 python3-bcolz - high performant compressed data container based on NumPy 
(Python
Changes:
 bcolz (1.1.0+ds1-5) unstable; urgency=medium
 .
   * deb/changelog: remove a trailing whitespace.
   * deb/control:
 + bump standards to 4.1.3 (no further changes needed).
 + update Vcs fields (project moved to salsa).
   * deb/copyright:
 + use HTTPS in format field.
 + expand copyright span to 2018.
   * deb/gbp.conf:
 + drop section import-orig.
 + change default branch to debian/master.
 + add sign-tags field.
   * deb/rules:
 + add check if nodoc is set for DEB_BUILD_OPTIONS.
Checksums-Sha1:
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python-bcolz-dbgsym_1.1.0+ds1-5_amd64.deb
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python-bcolz_1.1.0+ds1-5_amd64.deb
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python3-bcolz-dbgsym_1.1.0+ds1-5_amd64.deb
 c8102d124da0417204dff4e658746c4a12afbb5c 253820 
python3-bcolz_1.1.0+ds1-5_amd64.deb
Checksums-Sha256:
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python3-bcolz-dbgsym_1.1.0+ds1-5_amd64.deb
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python3-bcolz_1.1.0+ds1-5_amd64.deb
Files:
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 258c431aff0a2b34df069eb5b1f4cff5 4560 science optional 
bcolz_1.1.0+ds1-5.debian.tar.xz
 5cf611eede85334f5719f97cd7d02352 60572 doc optional 
bcolz-doc_1.1.0+ds1-5_all.deb
 75e7f7802db4b46b28c56716f8d3c095 9357 science optional 
bcolz_1.1.0+ds1-5_amd64.buildinfo
 fdee22552ae7f35a055791a3e501fae5 485764 debug optional 
python-bcolz-dbgsym_1.1.0+ds1-5_amd64.deb
 d56d56b3448d90ffe37458b97fd77ac0 302684 python optional 
python-bcolz_1.1.0+ds1-5_amd64.deb
 4e8a9bb3271cb9bee8e6502eb69b87e8 565800 debug optional 
python3-bcolz-dbgsym_1.1.0+ds1-5_amd64.deb
 6b22fe0ea519c619e1c25b184b55b891 253820 python optional 
python3-bcolz_1.1.0+ds1-5_amd64.deb

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Bug#872037: libvigrampex: Failure in MultiArrayPointoperatorsTest::testCombine2() [mips64el]

[Daniel Stender]

Source: libvigraimpex
Version: 1.10.0+git20160211.167be93+dfsg-4
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Current Vigra FTBFS on mips64el [1]:


[ 63%] Building CXX object 
test/multiarray/CMakeFiles/test_multiarray.dir/testsuccess.cxx.o
cd 
/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/obj/test/multiarray 
&& /usr/bin/c++  -DHasHDF5 -DHasJPEG -DHasPNG -DHasTIFF 
-I/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/include 
-I/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/test/include 
-I/usr/include/hdf5/serial  -std=c++11 -pthread -W -Wall -Wextra 
-Wno-unused-parameter -Wno-sign-compare -Wno-unused-variable -Wno-type-limits 
-g -O2 
-fdebug-prefix-map=/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg=.
 -fstack-protector-strong -Wformat -Werror=format-security -pipe -Wdate-time 
-D_FORTIFY_SOURCE=2   -o CMakeFiles/test_multiarray.dir/testsuccess.cxx.o -c 
/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/obj/test/multiarray/testsuccess.cxx
[ 65%] Linking CXX executable test_multiarray
cd 
/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/obj/test/multiarray 
&& /usr/bin/cmake -E cmake_link_script CMakeFiles/test_multiarray.dir/link.txt 
--verbose=1
/usr/bin/c++  -std=c++11 -pthread -W -Wall -Wextra -Wno-unused-parameter 
-Wno-sign-compare -Wno-unused-variable -Wno-type-limits -g -O2 
-fdebug-prefix-map=/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg=.
 -fstack-protector-strong -Wformat -Werror=format-security -pipe -Wdate-time 
-D_FORTIFY_SOURCE=2  -rdynamic CMakeFiles/test_multiarray.dir/test.cxx.o 
CMakeFiles/test_multiarray.dir/testsuccess.cxx.o  -o test_multiarray 
-Wl,-rpath,/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/obj/src/impex:/usr/lib/mips64el-linux-gnuabi64/hdf5/serial
 ../../src/impex/libvigraimpex.so.6.1.11.0 -ljpeg -lpng -lz -ltiff -lIlmImf 
-lImath -lHalf -lIex -lIlmThread 
/usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5.so 
/usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5_hl.so -lsz -lz -ltiff 
-lIlmImf -lImath -lHalf -lIex -lIlmThread 
/usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5.so 
/usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5_hl.so -lsz 
Running test_multiarray
cd 
/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/obj/test/multiarray 
&& ./run_test_multiarray.sh
Entering test suite MultiArrayTestSuite
All (24) tests passed in test suite MultiArrayTestSuite
Leaving test suite MultiArrayTestSuite

Entering test suite MultiArrayDataTestSuite
All (32) tests passed in test suite MultiArrayDataTestSuite
Leaving test suite MultiArrayDataTestSuite

Entering test suite ImageViewTestSuite
All (16) tests passed in test suite ImageViewTestSuite
Leaving test suite ImageViewTestSuite

Entering test suite MultiArrayPointOperatorsTestSuite

Failure in MultiArrayPointoperatorsTest::testCombine2()
Unexpected signal: memory access violation

Fatal error - aborting test suite MultiArrayPointOperatorsTestSuite.

test/multiarray/CMakeFiles/test_multiarray.dir/build.make:146: recipe for 
target 'test/multiarray/test_multiarray' failed
make[5]: *** [test/multiarray/test_multiarray] Error 1


DS

[1] 
https://buildd.debian.org/status/fetch.php?pkg=libvigraimpex=mips64el=1.10.0%2Bgit20160211.167be93%2Bdfsg-4=1502638529=0

-- System Information:
Debian Release: buster/sid
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.11.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), 
LANGUAGE=de_DE.utf8 (charmap=UTF-8)
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Bug#863063: libvigraimpex: New upstream versions (1.11.x)

[Daniel Stender]

This is coming up shortly.

DS

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Bug#871556: libvigraimpex: several tests failing in Gridgraph Test Dimension 3

[Daniel Stender]

Source: libvigraimpex
Version: 1.10.0+git20160211.167be93+dfsg-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)

With the latest upload there are FTBFS problems on some archs.


Running test_gridgraph
cd 
/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/obj/test/gridgraph 
&& ./run_test_gridgraph.sh
Entering test suite Gridgraph Test
Entering test suite Gridgraph Test Dimension 2
All (38) tests passed in test suite Gridgraph Test Dimension 2
Leaving test suite Gridgraph Test Dimension 2
Entering test suite Gridgraph Test Dimension 3

Failure in NeighborhoodTests::testIndirectNeighborhood()
Assertion failed: neighborOffsets[k] == -neighborOffsets[neighborCount-1-k] 
[(-1, -1, -1) != (-1, 1, -1)] 
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/test/gridgraph/test.cxx:183)

Failure in (::template testNeighborIterator)()
Unexpected Contract exception:  
Precondition violation!
Index out of bounds
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/include/vigra/multi_array.hxx:999)

Last checkpoint: target(*e, g) == *n [(1, -1, 0) != (1, -1, 0)] 
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/test/gridgraph/test.cxx:744)

Failure in (::template testNeighborIterator)()
Assertion failed: source(*e, g) == *j [(0, -2, 0) != (0, 0, 0)] 
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/test/gridgraph/test.cxx:743)

Failure in (::template testBackNeighborIterator)()
Unexpected Contract exception:  
Precondition violation!
Index out of bounds
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/include/vigra/multi_array.hxx:999)

Last checkpoint: target(*e, g) == *n [(0, -1, 0) != (0, -1, 0)] 
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/test/gridgraph/test.cxx:940)

Failure in (::template 
testBackNeighborIterator)()
Unexpected Contract exception:  
Precondition violation!
Index out of bounds
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/include/vigra/multi_array.hxx:999)

Last checkpoint: target(*e, g) == *n [(0, -1, 0) != (0, -1, 0)] 
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/test/gridgraph/test.cxx:940)

Failure in (::template testEdgeIterator)()
Unexpected Contract exception:  
Precondition violation!
Index out of bounds
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/include/vigra/multi_array.hxx:999)

Last checkpoint: !(e == lemon::INVALID) 
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/test/gridgraph/test.cxx:1062)

Failure in (::template testEdgeIterator)()
Unexpected Contract exception:  
Precondition violation!
Index out of bounds
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/include/vigra/multi_array.hxx:999)

Last checkpoint: !(e == lemon::INVALID) 
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/test/gridgraph/test.cxx:1062)

Failure in (::template testArcIterator)()
Unexpected Contract exception:  
Precondition violation!
Index out of bounds
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/include/vigra/multi_array.hxx:999)

Last checkpoint: !(e == lemon::INVALID) 
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/test/gridgraph/test.cxx:1143)

Failure in (::template testArcIterator)()
Unexpected Contract exception:  
Precondition violation!
Index out of bounds
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/include/vigra/multi_array.hxx:999)

Last checkpoint: !(e == lemon::INVALID) 
(/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/test/gridgraph/test.cxx:1143)

9 of 38 tests failed in test suite Gridgraph Test Dimension 3
Leaving test suite Gridgraph Test Dimension 3

9 of 76 tests failed in test suite Gridgraph Test
Leaving test suite Gridgraph Test

test/gridgraph/CMakeFiles/test_gridgraph.dir/build.make:123: recipe for target 
'test/gridgraph/test_gridgraph' failed
make[5]: *** [test/gridgraph/test_gridgraph] Error 1
make[5]: *** Deleting file 'test/gridgraph/test_gridgraph'
make[5]: Leaving directory 
'/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/obj'
CMakeFiles/Makefile2:1895: recipe for target 
'test/gridgraph/CMakeFiles/test_gridgraph.dir/all' failed


DS

-- System Information:
Debian Release: buster/sid
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.5.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), 
LANGUAGE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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Bug#853513: libvigraimpex: ftbfs with GCC-7

[Daniel Stender]

The particular testblock has been disabled temporarily with 
1.10.0+git20160211.167be93+dfsg-3.

DS

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Bug#853513: libvigraimpex: ftbfs with GCC-7

[Daniel Stender]

On 07.08.2017 20:26, Matthias Klose wrote:
> Control: tags -1 + patch
> 
> patch at
> http://launchpadlibrarian.net/332312910/libvigraimpex_1.10.0+git20160211.167be93+dfsg-2build3_1.10.0+git20160211.167be93+dfsg-2ubuntu1.diff.gz

Great! I'll take care of it shortly.

DS

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Bug#869786: libgpuarray-doc: pygpu chapter of docs is empty

[Daniel Stender]

Package: libgpuarray-doc
Version: 0.6.8-1
Severity: normal

The "pygpu package" chapter of the docs is empty.

DS

-- System Information:
Debian Release: buster/sid
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.5.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), 
LANGUAGE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages libgpuarray-doc depends on:
ii  libjs-sphinxdoc  1.5.6-2
ii  sphinx-rtd-theme-common  0.2.4-1

libgpuarray-doc recommends no packages.

libgpuarray-doc suggests no packages.

-- no debconf information

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Bug#869538: numba: use python-versioneer from the archive

[Daniel Stender]

Package: numba
Severity: wishlist
Control: block -1 by 766132

Once Versioneer becomes available, Numba should use that from the archive
instead of the embedded versioneer.py.

DS

-- System Information:
Debian Release: buster/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 4.5.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), 
LANGUAGE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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Bug#869537: numba should use python-six from the archive

[Daniel Stender]

Package: numba
Severity: wishlist

The current Numba packages run on the embedded numba/six.py, but instead
python-six from the archive should be used.

DS

-- System Information:
Debian Release: buster/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 4.5.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), 
LANGUAGE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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Bug#869536: numba: segfault on examples/mergesort.py

[Daniel Stender]

Package: numba
Version: 0.34.0-2
Severity: important

There's a segfault on /usr/share/doc/numba-doc/examples/mergesort.py, both,
running on python2 and python3:


$ ./mergesort.py 
===Running mergesort
Warmup
unsorted [ 0.70995183  0.22968405  0.7538558   0.3623305   0.02794212  
0.52308691]
Segmentation fault


DS

-- System Information:
Debian Release: buster/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 4.5.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), 
LANGUAGE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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Bug#869211: scoop: warnings on running subprocesses during build-time testing

[Daniel Stender]

Source: scoop
Version: 0.7.1-1
Severity: normal

Building scoop a couple of ResourceWarning-s appeared during testing:


dh_auto_test
I: pybuild base:184: cd /<>/test; python2.7 tests.py
.
--
Ran 77 tests in 40.935s

OK
I: pybuild base:184: cd /<>/test; python3.6 tests.py
./usr/lib/python3.6/subprocess.py:761: ResourceWarning: subprocess 8345 is 
still running
  ResourceWarning, source=self)
/usr/lib/python3.6/subprocess.py:761: ResourceWarning: subprocess 8350 is still 
running
  ResourceWarning, source=self)
./usr/lib/python3.6/subprocess.py:761: ResourceWarning: subprocess 8353 is 
still running
  ResourceWarning, source=self)
./usr/lib/python3.6/subprocess.py:761: ResourceWarning: subprocess 8356 is 
still running
  ResourceWarning, source=self)
./usr/lib/python3.6/subprocess.py:761: ResourceWarning: subprocess 8359 is 
still running
  ResourceWarning, source=self)


Thanks,
DS

-- System Information:
Debian Release: buster/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 4.5.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), 
LANGUAGE=de_DE.utf8 (charmap=UTF-8)
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Bug#864365: A simple program ends up with SIGSEGV [amd64]

[Daniel Stender]

On 07.06.2017 18:13, Lumin wrote:
> Oops, that's a sorrowful story ...

I've put it on RFA now (#864367). If you would like to pick it up, welcome!

Dan

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Bug#864365: A simple program ends up with SIGSEGV [amd64]

[Daniel Stender]

On 07.06.2017 17:52, Lumin wrote:
> Package: python3-numba
> Version: 0.33.0-1
> Severity: severe
> 
> Hi,
> 
> It fails to run even the simplest code:
> 
> ```
> #!/usr/bin/python3
> from numba import jit
> from numpy import arange
> import time
> 
> @jit
> def sum2d(arr):
> M, N = arr.shape
> result = 0.0
> for i in range(M):
> for j in range(N):
> result += arr[i,j]
> return result
> 
> a = arange(65536).reshape(256,256)
> t1 = time.time()
> print(sum2d(a))
> t2 = time.time()
> ```
> 
> terminated by signal SIGSEGV (Address boundary error)

Yup. That's why it's still in experimental ... :-)

DS

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Bug#863512: numba: segfault on test_shape [s390x]

[Daniel Stender]

Source: numba
Version: 0.33.0-1
Severity: serious

https://buildd.debian.org/status/fetch.php?pkg=numba=s390x=0.33.0-1=1495911986=0

This test breaks on s390x:


numba/tests/test_array_attr.py::TestNestedArrayAttr::test_shape Segmentation 
fault
E: pybuild pybuild:283: test: plugin custom failed with: exit code=139: cd 
/«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build && python2.7 -Wd -m pytest 
numba/tests -v -rs
dh_auto_test: pybuild --test --test-pytest -i python{version} -p 2.7 returned 
exit code 13


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Bug#863509: numba: test_mean_magnitude breaks (plugin custom failed with: exit code=1) [mips, mipsel]

[Daniel Stender]

Source: numba
Version: 0.33.0-1
Severity: serious

https://buildd.debian.org/status/fetch.php?pkg=numba=mips=0.33.0-1=1495913987=0
https://buildd.debian.org/status/fetch.php?pkg=numba=mipsel=0.33.0-1=1495915594=0

This test breaks appears on the mips archs:


numba/tests/test_array_reductions.py::TestArrayReductions::test_mean_basic 
PASSED
numba/tests/test_array_reductions.py::TestArrayReductions::test_mean_magnitude 
E: pybuild pybuild:283: test: plugin custom failed with: exit code=1: cd 
/«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build && python2.7 -Wd -m pytest 
numba/tests -v -rs
dh_auto_test: pybuild --test --test-pytest -i python{version} -p 2.7 returned 
exit code 13


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Bug#863508: numba: FTBFS: LLVM ERROR: Program used external function '__aeabi_unwind_cpp_pr0' [armel, armhf]

[Daniel Stender]

Source: numba
Version: 0.33.0-1
Severity: serious

https://buildd.debian.org/status/fetch.php?pkg=numba=armel=0.33.0-1=1495912245=0
https://buildd.debian.org/status/fetch.php?pkg=numba=armhf=0.33.0-1=1495912383=0

FTBFS on armel and armhf:


http_proxy='127.0.0.1:9' sphinx-build -N -bhtml 
.pybuild/pythonX.Y_2.7/build/docs/source/ 
debian/numba-doc/usr/share/doc/numba-doc/html/
Running Sphinx v1.4.9
making output directory...
LLVM ERROR: Program used external function '__aeabi_unwind_cpp_pr0' which could 
not be resolved!
debian/rules:22: recipe for target 'override_dh_installdocs' failed
make[1]: *** [override_dh_installdocs] Error 1


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Bug#863505: numba: AssertionError in TestTimedeltaArithmeticNoPython.test_mul and others [arm64]

[Daniel Stender]

Source: numba
Version: 0.33.0-1
Severity: serious

https://buildd.debian.org/status/fetch.php?pkg=numba=arm64=0.33.0-1=1495916190=0

There are a couple of supposedly related test failures on arm64:


___ TestTimedeltaArithmeticNoPython.test_mul ___

self = 

def test_mul(self):
f = self.jit(mul_usecase)
def check(a, b, expected):
self.assertPreciseEqual(f(a, b), expected)
self.assertPreciseEqual(f(b, a), expected)

# non-int64 int * timedelta64
check(TD(3), np.uint32(2), TD(6))
# int * timedelta64
check(TD(3), 2, TD(6))
check(TD(3, 'ps'), 2, TD(6, 'ps'))
check(TD('NaT', 'ps'), 2, TD('NaT', 'ps'))
# float * timedelta64
check(TD(7), 1.5, TD(10))
check(TD(-7), 1.5, TD(-10))
check(TD(7, 'ps'), -1.5, TD(-10, 'ps'))
check(TD(-7), -1.5, TD(10))
check(TD('NaT', 'ps'), -1.5, TD('NaT', 'ps'))
>   check(TD(7, 'ps'), float('nan'), TD('NaT', 'ps'))

numba/tests/test_npdatetime.py:328: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
numba/tests/test_npdatetime.py:313: in check
self.assertPreciseEqual(f(a, b), expected)
numba/tests/support.py:257: in assertPreciseEqual
self.fail("when comparing %s and %s: %s" % (first, second, failure_msg))
E   AssertionError: when comparing 0 picoseconds and NaT: 
numpy.timedelta64(0,'ps') != numpy.timedelta64('NaT','ps')



___ TestLoopTypesDatetimeNoPython.test_multiply_dm_m ___

self = 

def test_template(self):
fn = _make_ufunc_usecase(ufunc)
>   self._check_loop(fn, ufunc, loop)

numba/tests/test_ufuncs.py:1514: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
numba/tests/test_ufuncs.py:1471: in _check_loop
self._check_ufunc_with_dtypes(fn, ufunc, letter_types)
numba/tests/test_ufuncs.py:1500: in _check_ufunc_with_dtypes
ulps=ulps)
numba/tests/support.py:257: in assertPreciseEqual
self.fail("when comparing %s and %s: %s" % (first, second, failure_msg))
E   AssertionError: when comparing [   -4 0 3 'NaT' 'NaT' 0-7 
'NaT'] and [   -4 0 3 'NaT' 'NaT' 0-7 0]: 
numpy.timedelta64('NaT','D') != numpy.timedelta64(0,'D') : ufunc 'multiply' 
arrays differ ([array([ 1.5,  0. ,  1.5,  nan, -3.5,  0. , -3.5,  nan]), 
array([   -3, 0, 2, 'NaT', 'NaT',-3, 2, 0], 
dtype='timedelta64[D]'), array([   -4, 0, 3, 'NaT', 'NaT', 0,
-7, 0], dtype='timedelta64[D]')]):
E   args: exact
E   expected [   -4 0 3 'NaT' 'NaT' 0-7 'NaT']
E   got [   -4 0 3 'NaT' 'NaT' 0-7 0]



___ TestLoopTypesDatetimeNoPython.test_multiply_md_m ___

self = 

def test_template(self):
fn = _make_ufunc_usecase(ufunc)
>   self._check_loop(fn, ufunc, loop)

numba/tests/test_ufuncs.py:1514: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
numba/tests/test_ufuncs.py:1471: in _check_loop
self._check_ufunc_with_dtypes(fn, ufunc, letter_types)
numba/tests/test_ufuncs.py:1500: in _check_ufunc_with_dtypes
ulps=ulps)
numba/tests/support.py:257: in assertPreciseEqual
self.fail("when comparing %s and %s: %s" % (first, second, failure_msg))
E   AssertionError: when comparing [   -7 'NaT' 3 0 0 'NaT'-4 
'NaT'] and [   -7 'NaT' 3 0 0 'NaT'-4 0]: 
numpy.timedelta64('NaT','D') != numpy.timedelta64(0,'D') : ufunc 'multiply' 
arrays differ ([array([2, 'NaT', 2, 0,-3, 'NaT',-3, 0], 
dtype='timedelta64[D]'), array([-3.5,  nan,  1.5,  0. ,  0. , -3.5,  1.5,  
nan]), array([   -7, 'NaT', 3, 0, 0, 'NaT',-4, 0], 
dtype='timedelta64[D]')]):
E   args: exact
E   expected [   -7 'NaT' 3 0 0 'NaT'-4 'NaT']
E   got [   -7 'NaT' 3 0 0 'NaT'-4 0]


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Bug#863504: numba: AssertionError in TestRaising.test_assert_statement_objmode [amd64, i386, arm64]

[Daniel Stender]

Source: numba
Version: 0.33.0-1
Severity: serious

https://buildd.debian.org/status/fetch.php?pkg=numba=arm64=0.33.0-1=1495916190=0
https://buildd.debian.org/status/fetch.php?pkg=numba=i386=0.33.0-1=1495914429=0

This test failure appears:


__ TestRaising.test_assert_statement_objmode ___

self = 

def test_assert_statement_objmode(self):
>   self.check_assert_statement(flags=force_pyobj_flags)

numba/tests/test_exceptions.py:196: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
numba/tests/test_exceptions.py:193: in check_assert_statement
self.assertEqual(str(cm.exception), "bar")
E   AssertionError: 'bar\nassert 2 == 1' != 'bar'


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Bug#855577: numba: FTBFS: several tests fail

[Daniel Stender]

For the latest upload (0.33.0 in experimental), the tests have been failsafed
again so that there are even packages building to try out.

Bug reports on the individual test failures and other remaining things to fix
are coming up.

Failsafe is going to be removed again when the package hits unstable.

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Bug#851578: python-numba: fails to install: SyntaxError: invalid syntax

[Daniel Stender]

... in.

I'm going to upload this already.

There are a couple of problems left, I'll file bug reports on them so that they 
could be
discussed, focused on if wanted.

DS

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Bug#851578: add nmu patch for this bug, however encountered FTBFS due to testsuite failure

[Daniel Stender]

On 17.02.2017 16:32, Daniel Stender wrote:
> On 17.02.2017 15:41, lumin wrote:
>> Control: tags -1 +patch
>>
>> Here is an NMU patch for this package. I intended to file an
>> RFS but the debomatic build failure stopped me to do so.
>>
>> The build failure was caused by testsuite failure:
>> http://debomatic-amd64.debian.net/distribution#experimental/numba/0.30.0-2.1/buildlog
> 
> Thanks for the changes. I'll upload anything on this package.

... it would be great if you could/would incorporate your changes, patches etc. 
into
the Git repo.

Thanks,
DS

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Bug#851578: add nmu patch for this bug, however encountered FTBFS due to testsuite failure

[Daniel Stender]

On 17.02.2017 15:41, lumin wrote:
> Control: tags -1 +patch
> 
> Here is an NMU patch for this package. I intended to file an
> RFS but the debomatic build failure stopped me to do so.
> 
> The build failure was caused by testsuite failure:
> http://debomatic-amd64.debian.net/distribution#experimental/numba/0.30.0-2.1/buildlog

Thanks for the changes. I'll upload anything on this package.

DS

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Bug#831541: theano: single GradientError and WrongValues in tests on s390x, ppc64 and sparc

[Daniel Stender]

On 14.02.2017 08:43, Rebecca N. Palmer wrote:
> Found the problem: the affected functions ( 
> https://sources.debian.net/src/theano/0.8.2-4/theano/sparse/opt.py/#L862 , 
> https://sources.debian.net/src/theano/0.8.2-4/theano/sparse/opt.py/#L1902 ) 
> cast a pointer-to-intptr_t (64 bit) to a pointer-to-int (32-bit).
> 
> Which isn't just broken on big-endian systems, it's a strict aliasing 
> violation *everywhere* (i.e. technically undefined behaviour with 
> optimization on, which it is by default, though it appears to work in 
> practice).
> 
> (I expect to post a patch tonight: the obvious has a potential overflow 
> issue, and it also needs a c_code_cache_version change to make the fix be 
> used in existing installs).

That would be sensational. #835531 doesn't keep up being RC, that would mean 
that we're through
to Stretch if this bug could be closed. Much thx in advance!

Daniel

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Bug#835531: fail of test_csr_correct_output_faster_than_scipy at times (FTBFS)

[Daniel Stender]

On 14.02.2017 08:59, Ole Streicher wrote:
> Hi Daniel,
> 
> I don't really see why you declare this failure as "serious". From the
> source (and the bug name), it basically means that theano took a bit
> longer to calculate than scipy for the same calculation. This may depend
> on the scipy version and optimization, and also on the timing (load)
> during the test -- it is calendar time what is taken here.
> 
> IMO, the failure is severity "normal", maybe you could consider
> resetting the severity to this value?
> 
> Best regards
> 
> Ole

Yes, in the meanwhile, I've thought into the same direction. The latest build 
(0.8.2-5~exp1)
succeeded again without this appeared anywhere. I'll do that.

Daniel

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Bug#835531: theano: FTBFS on amd64 (fail of test_csr_correct_output_faster_than_scipy)

[Daniel Stender]

Control: severity -1 serious

No, unfortunately this turned out to be RC problem. It appears also in buildd 
builds:
https://buildd.debian.org/status/fetch.php?pkg=theano=i386=0.8.2-4=1487015636=0

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Bug#848764: theano: test failures with Numpy 1.12

[Daniel Stender]

Thanks for the patch. It solves most of the problems towards Numpy 1.12, but 
from the complete
testsuite 4 errors remain:


ERROR: test_DownsampleFactorMax 
(theano.tensor.signal.tests.test_pool.TestDownsampleFactorMax)
--
Traceback (most recent call last):
  File "/<>/theano/tensor/signal/tests/test_pool.py", line 189, in 
test_DownsampleFactorMax
mode=mode)
  File "/<>/theano/tensor/signal/tests/test_pool.py", line 39, in 
numpy_max_pool_2d
output_val = numpy.zeros(out_shp)
TypeError: 'float' object cannot be interpreted as an integer

==
ERROR: test_max_pool_2d_2D 
(theano.tensor.signal.tests.test_pool.TestDownsampleFactorMax)
--
Traceback (most recent call last):
  File "/<>/theano/tensor/signal/tests/test_pool.py", line 664, in 
test_max_pool_2d_2D
mode=mode)
  File "/<>/theano/tensor/signal/tests/test_pool.py", line 39, in 
numpy_max_pool_2d
output_val = numpy.zeros(out_shp)
TypeError: 'float' object cannot be interpreted as an integer

==
ERROR: test_max_pool_2d_3D 
(theano.tensor.signal.tests.test_pool.TestDownsampleFactorMax)
--
Traceback (most recent call last):
  File "/<>/theano/tensor/signal/tests/test_pool.py", line 710, in 
test_max_pool_2d_3D
mode)
  File "/<>/theano/tensor/signal/tests/test_pool.py", line 39, in 
numpy_max_pool_2d
output_val = numpy.zeros(out_shp)
TypeError: 'float' object cannot be interpreted as an integer

==
ERROR: test_max_pool_2d_6D 
(theano.tensor.signal.tests.test_pool.TestDownsampleFactorMax)
--
Traceback (most recent call last):
  File "/<>/theano/tensor/signal/tests/test_pool.py", line 737, in 
test_max_pool_2d_6D
mode=mode)
  File "/<>/theano/tensor/signal/tests/test_pool.py", line 39, in 
numpy_max_pool_2d
output_val = numpy.zeros(out_shp)
TypeError: 'float' object cannot be interpreted as an integer

--
Ran 2995 tests in 6109.672s

FAILED (SKIP=113, errors=4)


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Bug#852305: depends on non existing package libblosc1

[Daniel Stender]

Control: tags -1 + unreproducible

Tell me if I miss something ... otherwise I'm going to close this issue in the 
next days.

Anyway, Bcolz is in unstable now.

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Bug#852307: bcolz: test_leftover_ptr_with_statement_create_open fails on s390x, powerpc

[Daniel Stender]

Package: bcolz
Version: 1.1.0+ds1-2
Severity: serious
Justification: fails to build from source
Control: forwarded -1 https://github.com/Blosc/bcolz/issues/329

There is a test failure on s390x and powerpc [1]:


==
FAIL: test_leftover_ptr_create_flush_open 
(bcolz.tests.test_carray.LeftoverDiskTest)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 2516, in 
test_leftover_ptr_create_flush_open
self.assertEqual((n_chunks * chunklen) + i, out.value)
AssertionError: 100 != 0

==
FAIL: test_leftover_ptr_with_statement_create_open 
(bcolz.tests.test_carray.LeftoverDiskTest)
--
Traceback (most recent call last):
  File "bcolz/tests/test_carray.py", line 2533, in 
test_leftover_ptr_with_statement_create_open
self.assertEqual((n_chunks * chunklen) + i, out.value)
AssertionError: 100 != 0

--
Ran 1254 tests in 5.247s

FAILED (failures=2, skipped=156)


DS

[1] https://buildd.debian.org/status/package.php?p=bcolz=experimental


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  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 4.8.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
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Bug#852305: depends on non existing package libblosc1

[Daniel Stender]

On 23.01.2017 14:02, Martin Steigerwald wrote:
> Package: python-bcolz
> Version: 1.1.0+ds1-2
> Severity: serious
> 
> Dear Maintainer,
> 
> on searching what to install to make
> 
> […]/pkg-fio> tools/hist/fiologparser_hist.py
> Traceback (most recent call last):
>   File "tools/hist/fiologparser_hist.py", line 18, in 
> import pandas
> ImportError: No module named pandas
> 
> work, I came across python-bcolz.
> 
> Yet this is not installable:
> 
> […]~> LANG=C sudo apt install python-bcolz
> Reading package lists... Done
> Building dependency tree
> Reading state information... Done
> Some packages could not be installed. This may mean that you have
> requested an impossible situation or if you are using the unstable
> distribution that some required packages have not yet been created
> or been moved out of Incoming.
> The following information may help to resolve the situation:
> 
> The following packages have unmet dependencies:
>  python-bcolz : Depends: libblosc1 (>= 1.9.0) but it is not installable
> Recommends: python-numexpr but it is not installable
> E: Unable to correct problems, you have held broken packages.
> 
> 
> […]~> LANG=C apt-cache policy libblosc1
> libblosc1:
>   Installed: (none)
>   Candidate: (none)
>   Version table:
> 
> […]~> LANG=C apt-cache policy python-numexpr
> python-numexpr:
>   Installed: (none)
>   Candidate: (none)
>   Version table:
> 
> I see no bcolz related upload in 2017, so this issue may be there for quite
> some time already.
> 
> Thanks,
> Martin

Hi Martin,

yep, bcolz won't make it into Debian 9 (too late to fix #329 [1]), but 
libblosc1 should be available [2] ...

Daniel

[1] https://github.com/Blosc/bcolz/issues/329

[2] https://packages.qa.debian.org/c/c-blosc.html


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Bug#831541: theano: single GradientError and WrongValues in tests on s390x, ppc64 and sparc

[Daniel Stender]

Control: severity -1 serious

The build time tests for s390x are temporarily failsafed to workaround this, but
this must be solved before the release.

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Bug#831540: theano: assertion error in test_fit_int64 on i386 and hurd/kreebsd-i386

[Daniel Stender]

Control: severity -1 serious

The build time tests are temporarily failsafed on i386 to workaround this, but 
that must
be solved for the release.

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Bug#852052: libvigraimpex: current vigra supports Python 3

[Daniel Stender]

Source: libvigraimpex
Version: 1.10.0+git20160211.167be93+dfsg-2
Severity: wishlist

A python3-vigra package would be great to have.

DS

-- System Information:
Debian Release: stretch/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 4.8.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
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Bug#852051: libvigraimpex: captures build path (doesn't build reproducible)

[Daniel Stender]

Source: libvigraimpex
Severity: important
User: reproducible-bui...@lists.alioth.debian.org
Usertags: buildpath

libvigraimpex doesn't build reproducible [1] because the build path is
captured during build [2]. I'll get into this shortly.

DS

[1] 
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libvigraimpex.html

[2] 
https://tests.reproducible-builds.org/debian/issues/captures_build_path_issue.html

-- System Information:
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  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 4.8.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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Bug#848764: theano: FTBFS: Test failures

[Daniel Stender]

Control: retitle -1 test failures with Numpy 1.12

This is been working on upstream [1], marked as being a cornerstone for release 
9.0.
A partly fix has become available recently [2], but some failures remains.

DS

[1] https://github.com/Theano/Theano/issues/5396 (Make Theano support numpy 
1.12)

[2] https://github.com/Theano/Theano/pull/5406

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Bug#848764: theano: FTBFS: Test failures

[Daniel Stender]

Thanks for reporting this.

There are 3 errors and 2 failures in the tests in that build, the TypeError: 
"'numpy.float64' object cannot be interpreted
as an index" (3) points to being another problem with numpy 1.12.0.

1)

ERROR: test_infer_shape (theano.sparse.tests.test_sp2.BinomialTester)
--
Traceback (most recent call last):
  File "/<>/theano/sparse/tests/test_sp2.py", line 100, in 
test_infer_shape
self.op_class)
  File "/<>/theano/tests/unittest_tools.py", line 251, in 
_compile_and_check
numeric_outputs = outputs_function(*numeric_inputs)
  File "/<>/theano/compile/function_module.py", line 871, in 
__call__
storage_map=getattr(self.fn, 'storage_map', None))
  File "/<>/theano/gof/link.py", line 314, in raise_with_op
reraise(exc_type, exc_value, exc_trace)
  File "/<>/theano/compile/function_module.py", line 859, in 
__call__
outputs = self.fn()
  File "/<>/theano/gof/op.py", line 912, in rval
r = p(n, [x[0] for x in i], o)
  File "/<>/theano/sparse/sandbox/sp2.py", line 125, in perform
binomial = numpy.random.binomial(n, p, size=shape)
  File "mtrand.pyx", line 3764, in mtrand.RandomState.binomial 
(numpy/random/mtrand/mtrand.c:31661)
TypeError: Cannot cast array data from dtype('float64') to dtype('int64') 
according to the rule 'safe'
Apply node that caused the error: Binomial{format='csc', 
dtype='float64'}(, , 
)
Toposort index: 0
Inputs types: [TensorType(float64, scalar), TensorType(float64, scalar), 
TensorType(int64, vector)]
Inputs shapes: [(), (), (2,)]
Inputs strides: [(), (), (8,)]
Inputs values: [array(5.0), array(0.25), array([3, 5])]
Outputs clients: [['output']]

Backtrace when the node is created(use Theano flag traceback.limit=N to make it 
longer):
  File "/usr/lib/python2.7/dist-packages/nose/suite.py", line 177, in __call__
return self.run(*arg, **kw)
  File "/usr/lib/python2.7/dist-packages/nose/suite.py", line 224, in run
test(orig)
  File "/usr/lib/python2.7/dist-packages/nose/case.py", line 45, in __call__
return self.run(*arg, **kwarg)
  File "/usr/lib/python2.7/dist-packages/nose/case.py", line 133, in run
self.runTest(result)
  File "/usr/lib/python2.7/dist-packages/nose/case.py", line 151, in runTest
test(result)
  File "/usr/lib/python2.7/unittest/case.py", line 393, in __call__
return self.run(*args, **kwds)
  File "/usr/lib/python2.7/unittest/case.py", line 329, in run
testMethod()
  File "/<>/theano/sparse/tests/test_sp2.py", line 98, in 
test_infer_shape
[Binomial(sp_format, o_type)(*self.inputs)],

HINT: Use the Theano flag 'exception_verbosity=high' for a debugprint and 
storage map footprint of this apply node.


2)

RROR: test_op (theano.sparse.tests.test_sp2.BinomialTester)
--
Traceback (most recent call last):
  File "/<>/theano/sparse/tests/test_sp2.py", line 85, in test_op
tested = f(*self._inputs)
  File "/<>/theano/compile/function_module.py", line 871, in 
__call__
storage_map=getattr(self.fn, 'storage_map', None))
  File "/<>/theano/gof/link.py", line 314, in raise_with_op
reraise(exc_type, exc_value, exc_trace)
  File "/<>/theano/compile/function_module.py", line 859, in 
__call__
outputs = self.fn()
  File "/<>/theano/gof/op.py", line 912, in rval
r = p(n, [x[0] for x in i], o)
  File "/<>/theano/sparse/sandbox/sp2.py", line 125, in perform
binomial = numpy.random.binomial(n, p, size=shape)
  File "mtrand.pyx", line 3764, in mtrand.RandomState.binomial 
(numpy/random/mtrand/mtrand.c:31661)
TypeError: Cannot cast array data from dtype('float64') to dtype('int64') 
according to the rule 'safe'
Apply node that caused the error: Binomial{format='csc', 
dtype='float64'}(, , 
)
Toposort index: 0
Inputs types: [TensorType(float64, scalar), TensorType(float64, scalar), 
TensorType(int64, vector)]
Inputs shapes: [(), (), (2,)]
Inputs strides: [(), (), (8,)]
Inputs values: [array(5.0), array(0.25), array([3, 5])]
Outputs clients: [['output']]

Backtrace when the node is created(use Theano flag traceback.limit=N to make it 
longer):
  File "/usr/lib/python2.7/dist-packages/nose/suite.py", line 177, in __call__
return self.run(*arg, **kw)
  File "/usr/lib/python2.7/dist-packages/nose/suite.py", line 224, in run
test(orig)
  File "/usr/lib/python2.7/dist-packages/nose/case.py", line 45, in __call__
return self.run(*arg, **kwarg)
  File "/usr/lib/python2.7/dist-packages/nose/case.py", line 133, in run
self.runTest(result)
  File "/usr/lib/python2.7/dist-packages/nose/case.py", line 151, in runTest
test(result)
  File "/usr/lib/python2.7/unittest/case.py", line 393, in __call__
return self.run(*args, **kwds)
  File "/usr/lib/python2.7/unittest/case.py", 

Bug#835531: theano: FTBFS on amd64 (fail of test_csr_correct_output_faster_than_scipy)

[Daniel Stender]

Control: severity -1 normal

Reopened because this appeared again in reproducible builds CI. However, this 
failure is only
hardly reproducible. Currently it builds fine throughout. Therefore, I'm 
lowering the severity
of this bug report.

DS

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Re: Comments regarding bcolz_1.1.0+ds1-1_amd64.changes

[Daniel Stender]

On 04.09.2016 19:59, Chris Lamb wrote:
> Please mention (at least) the NumPy attribution on you next upload.
> 
>  -- Chris Lamb   Sun, 04 Sep 2016 17:59:12 +

... that could have been made clearer. O.k!

Best,
Dan

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Bug#835531: theano: FTBFS on amd64 (fail of test_csr_correct_output_faster_than_scipy)

[Daniel Stender]

Source: theano
Version: 0.8.2-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Current theano now fails also on amd64:


FAIL: test_csr_correct_output_faster_than_scipy 
(theano.sparse.tests.test_basic.test_structureddot)
--
Traceback (most recent call last):
  File "/build-1st/theano-0.8.2/theano/sparse/tests/test_basic.py", line 1218, 
in test_csr_correct_output_faster_than_scipy
scipy_time, overhead_rtol, overhead_tol))
AssertionError: (0.016754150390625, 0.015386821746826172, 0.012169837951660156, 
1.1, 0.002)

--
Ran 2995 tests in 17686.047s

FAILED (SKIP=113, failures=1)


DS

-- System Information:
Debian Release: stretch/sid
  APT prefers testing
  APT policy: (500, 'testing'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 4.5.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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Bug#831541: theano: single GradientError and WrongValues in tests on s390x

[Daniel Stender]

Source: theano
Version: 0.8.2-2
Severity: normal

The tests on s390x came up with three single errors (shortened) [1]:


ERROR: test_grad (theano.sparse.tests.test_basic.SamplingDotTester)
--
GradientError: GradientError: numeric gradient and analytic gradient exceed 
tolerance:
At position 0 of argument 0,
abs. error = 4.801748,  abs. tolerance = 0.000100
rel. error = 1.00,  rel. tolerance = 0.000100
Exception args: 
The error happened with the following inputs:, [array([[ 4.,  2.,  2.],
   [ 0.,  1.,  3.],
   [ 1.,  0.,  0.],



ERROR: test_op (theano.sparse.tests.test_basic.SamplingDotTester)
--
WrongValue: WrongValue
   : shape, dtype, strides, min, max, n_inf, n_nan:
  Expected : (4, 5) float64 (40, 8) 0.0 28.0 0 0 
  Value: (4, 5) float64 (40, 8) 0.0 0.0 0 0 
  expected: [[ 28.   0.   0.   0.   0.]
 [ 12.   9.  11.   0.   0.]
 [  4.   1.   0.   2.   0.]
 [  0.   8.   0.   0.   0.]]



ERROR: test (theano.sparse.tests.test_basic.UsmmTests)
--
Traceback (most recent call last):
  File "/«PKGBUILDDIR»/theano/sparse/tests/test_basic.py", line 1458, in test
utt.assert_allclose(f_a_out, f_b_out, rtol=rtol, atol=atol)
  File "/«PKGBUILDDIR»/theano/tests/unittest_tools.py", line 339, in 
assert_allclose
raise WrongValue(val1, val2, rtol, atol)
WrongValue: WrongValue
   : shape, dtype, strides, min, max, n_inf, n_nan:
  Expected : (10, 200) float32 (800, 4) -0.999263 0.999721 0 0 
  Value: (10, 200) float32 (800, 4) -20.3578 20.3085 0 0 
  expected: [[ 0.43297213 -0.99617213 -0.94651264 ...,  0.90926737  
0.87269104
   0.18024164]


The same errors occurs on ppc64 [2].

This is a regression from 0.8.2-2 (0.8.2-1 was build with `FAST_COMPILE` and 
this didn't
came up then). dh_auto_test is temporarily failsafed, this is going to be 
removed when
this problem is solved.

Thanks,
DS

[1] 
https://buildd.debian.org/status/fetch.php?pkg=theano=s390x=0.8.2-2=1468619676

[2] 
https://buildd.debian.org/status/fetch.php?pkg=theano=ppc64=0.8.2-3=1468725341

-- System Information:
Debian Release: stretch/sid
  APT prefers testing
  APT policy: (500, 'testing'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 4.5.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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Bug#831540: theano: assertion error in test_fit_int64 on i386

[Daniel Stender]

Source: theano
Version: 0.8.2-2
Severity: normal

There is a single assertion error in the tests running on Python 3.5 on i386 
[1]:


FAIL: test_fit_int64 (theano.tensor.tests.test_basic.T_long_tensor)
--
Traceback (most recent call last):
  File "/«PKGBUILDDIR»/theano/tensor/tests/test_basic.py", line 6675, in 
test_fit_int64
assert vector_ct.dtype == 'int64'
AssertionError

--
Ran 2995 tests in 6746.401s


The same single error occurs on kfreebsd-i386 [2], and hurd-i386 [3].

This is a regression from 0.8.2-2 (0.8.2-1 was build with `FAST_COMPILE`).
dh_auto_tests is temporarily failsafed, this is going to be removed when this
problem is solved.

Thanks,
DS

[1] 
https://buildd.debian.org/status/fetch.php?pkg=theano=i386=0.8.2-2=1468619301

[2] 
https://buildd.debian.org/status/fetch.php?pkg=theano=kfreebsd-i386=0.8.2-2=1468626553

[3] 
https://buildd.debian.org/status/fetch.php?pkg=theano=hurd-i386=0.8.2-2=1468689994

-- System Information:
Debian Release: stretch/sid
  APT prefers testing
  APT policy: (500, 'testing'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 4.5.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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Bug#824116: please reconsider enabling tests

[Daniel Stender]

Yes, sure that could be done. It's the other way around then, for quick builds,
DEB_BUILD_OPTIONS=nocheck could be exported. That what it's for, anyway.

I'm working on updating Theano and there are some problems towards build time
testing left which need some deeper investigation (Like "Unable to create
compiledir directory. Check the permissions). But it's coming up, soon.

Daniel

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Bug#820429: libvigraimpex: FTBFS on kfreebsd-i386 and hurd-i386: Assertion failed: Sequence items differ at index 5

[Daniel Stender]

... I'll leave out the part with the new switch for powerpc, ppc64 and s390x. 
Unlike teem which
needs that to build on several archs (#820772) this brings new problems e.g. on 
s390x:


[ 90%] Linking CXX executable test_threadpool
cd 
/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/obj/test/threadpool 
&& /usr/bin/cmake -E cmake_link_script CMakeFiles/test_threadpool.dir/link.txt 
--verbose=1
/usr/lib/ccache/c++   -std=c++11 -pthread -W -Wall -Wextra 
-Wno-unused-parameter -Wno-sign-compare -Wno-unused-variable -Wno-type-limits 
-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -pipe 
-Wdate-time -D_FORTIFY_SOURCE=2 -ffp-contract=off   
CMakeFiles/test_threadpool.dir/test.cxx.o 
CMakeFiles/test_threadpool.dir/testsuccess.cxx.o  -o test_threadpool -rdynamic 
Running test_threadpool
cd 
/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/obj/test/threadpool 
&& ./run_test_threadpool.sh
*** Error in `./test_threadpool': malloc(): memory corruption (fast): 
0x80050e80 ***
*** Error in `./test_threadpool': double free or corruption (fasttop): 
0x80051290 ***
=== Backtrace: =
=== Backtrace: =
/lib/s390x-linux-gnu/libc.so.6(+0x82088)[0x4000b5f088]
/lib/s390x-linux-gnu/libc.so.6(+0x82088)[0x4000b5f088]
/lib/s390x-linux-gnu/libc.so.6(+0x88d6c)[0x4000b65d6c]
/lib/s390x-linux-gnu/libc.so.6(+0x88d6c)[0x4000b65d6c]
/lib/s390x-linux-gnu/libc.so.6(+0x8975e)[0x4000b6675e]
/lib/s390x-linux-gnu/libc.so.6(+0x8b90a)[0x4000b6890a]
./test_threadpool(_ZNSt14_Function_base13_Base_managerIZN5vigra10ThreadPool7enqueueIZN15ThreadPoolTests15test_threadpoolEvEUlmE_EESt6futureIvEOT_EUliE_E10_M_managerERSt9_Any_dataRKSC_St18_Manager_operation+0x66)[0x8001ed4e]
/lib/s390x-linux-gnu/libc.so.6(__libc_malloc+0x110)[0x4000b6a730]
./test_threadpool(_ZNSt6thread5_ImplISt12_Bind_simpleIFZN5vigra10ThreadPool4initERKNS2_15ParallelOptionsEEUlvE_vEEE6_M_runEv+0x252)[0x8001d922]
/usr/lib/s390x-linux-gnu/libstdc++.so.6(_Znwm+0x20)[0x40008def08]
/usr/lib/s390x-linux-gnu/libstdc++.so.6(+0xda29c)[0x400091229c]
./test_threadpool(_ZN15ThreadPoolTests15test_threadpoolEv+0x11c)[0x800219cc]
/lib/s390x-linux-gnu/libpthread.so.0(+0x7b8c)[0x4000ac2b8c]
./test_threadpool(_ZN5vigra6detail13catch_signalsINS0_21test_case_run_functorEEEiT_RNS0_9errstreamEi+0xfa)[0x8001e4ea]
/lib/s390x-linux-gnu/libc.so.6(+0xfa1ba)[0x4000bd71ba]
=== Memory map: 
./test_threadpool(_ZN5vigra16catch_exceptionsINS_6detail21test_case_run_functorEEEiT_RNS1_9errstreamEi+0x2a)[0x8001e66a]
./test_threadpool(_ZN5vigra6detail15class_test_caseI15ThreadPoolTestsE3runERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISA_EE+0x326)[0x80029ca6]
./test_threadpool(_ZN5vigra10test_suite3runERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE+0x1bc)[0x8001c65c]
./test_threadpool(main+0x56)[0x800193fe]
/lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0x110)[0x4000aff4c0]
./test_threadpool[0x80019586]
=== Memory map: 
8000-80033000 r-xp  08:01 90443326  
/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/obj/test/threadpool/test_threadpool
80033000-80034000 rw-p 00033000 08:01 90443326  
/<>/libvigraimpex-1.10.0+git20160211.167be93+dfsg/obj/test/threadpool/test_threadpool
80034000-80066000 rw-p  00:00 0 
0040-00401000 ---p  00:00 0 
00401000-004000801000 rw-p  00:00 0[stack]
004000801000-004000828000 r-xp  08:01 85463691  
/lib/s390x-linux-gnu/ld-2.22.so
004000828000-004000829000 r--p 00026000 08:01 85463691  
/lib/s390x-linux-gnu/ld-2.22.so
004000829000-00400082b000 rw-p 00027000 08:01 85463691  
/lib/s390x-linux-gnu/ld-2.22.so
00400082b000-00400082d000 rw-p  00:00 0 
004000834000-004000836000 r-xp  08:01 85462654  
/usr/lib/s390x-linux-gnu/libeatmydata.so.1.1.2
004000836000-004000837000 r--p 1000 08:01 85462654  
/usr/lib/s390x-linux-gnu/libeatmydata.so.1.1.2
004000837000-004000838000 rw-p 2000 08:01 85462654  
/usr/lib/s390x-linux-gnu/libeatmydata.so.1.1.2
004000838000-0040009f2000 r-xp  08:01 85459933  
/usr/lib/s390x-linux-gnu/libstdc++.so.6.0.21
0040009f2000-0040009f3000 ---p 001ba000 08:01 85459933  
/usr/lib/s390x-linux-gnu/libstdc++.so.6.0.21
0040009f3000-0040009fc000 r--p 001ba000 08:01 85459933  
/usr/lib/s390x-linux-gnu/libstdc++.so.6.0.21
0040009fc000-004000a0 rw-p 001c3000 08:01 85459933  
/usr/lib/s390x-linux-gnu/libstdc++.so.6.0.21
004000a0-004000a03000 rw-p  00:00 0 
004000a03000-004000aa5000 r-xp  08:01 85463698  
/lib/s390x-linux-gnu/libm-2.22.so
004000aa5000-004000aa6000 ---p 000a2000 08:01 85463698  
/lib/s390x-linux-gnu/libm-2.22.so

Bug#820429: libvigraimpex: FTBFS on kfreebsd-i386 and hurd-i386: Assertion failed: Sequence items differ at index 5

[Daniel Stender]

On Sun, 10 Apr 2016 22:39:39 +0200 Tobias Frost  wrote:
> +ifneq (,$(filter $(DEB_HOST_ARCH_CPU), i386))
> +Â Â CFLAGS += -ffloat-store
> +Â Â CXXFLAGS += -ffloat-store
> +endif
> +ifneq (,$(filter $(DEB_HOST_ARCH_CPU), powerpc ppc64 s390x))
> +Â Â CFLAGS += -ffp-contract=off
> +Â Â CXXFLAGS += -ffp-contract=off
> +endif

Yup, that works. Thank you very much!

Daniel

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Bug#812852: libvigraimpex: fail of test_multiarray_chunked on ppc64el

[Daniel Stender]

Control: severity -1 normal

For this clearly is a problem on the testsuite itself which has no effect on the
usability on the package, and because it has been fixed not being a FTBFS issue
again I'm lowering the severity of this bug, so that it not blocks the package 
to
get into Testing.

Anyway, I'm going to fix this soon.

Thanks,
DS

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Bug#817840: libvigraimpex: fail of test/math on mips

[Daniel Stender]

Source: libvigraimpex
Version: 1.10.0+git20160120.803d5d4-1
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Since 1.10.0+git20160120.803d5d4-1 the build breaks on mips [1] with a failure
of test/math:


[ 57%] Linking CXX executable test_math
cd /«BUILDDIR»/libvigraimpex-1.10.0+git20160120.803d5d4/obj/test/math && 
/usr/bin/cmake -E cmake_link_script CMakeFiles/test_math.dir/link.txt 
--verbose=1
/usr/bin/c++   -pthread -std=c++11 -W -Wall -Wextra -Wno-unused-parameter 
-Wno-sign-compare -Wno-unused-variable -Wno-type-limits -g -O2 
-fstack-protector-strong -Wformat -Werror=format-security -pipe -Wdate-time 
-D_FORTIFY_SOURCE=2 --param ggc-min-expand=20   
CMakeFiles/test_math.dir/test.cxx.o CMakeFiles/test_math.dir/testsuccess.cxx.o  
-o test_math -rdynamic 
Running test_math
cd /«BUILDDIR»/libvigraimpex-1.10.0+git20160120.803d5d4/obj/test/math && 
./run_test_math.sh
Illegal instruction
test/math/CMakeFiles/test_math.dir/build.make:123: recipe for target 
'test/math/test_math' failed
make[5]: *** [test/math/test_math] Error 1
make[5]: *** Deleting file 'test/math/test_math'


This needs to be fixed to complete the ongoing transition [2] to build on all
officially supported archs.

DS

[1] https://buildd.debian.org/status/logs.php?pkg=libvigraimpex=mips

[2] https://bugs.debian.org/815153 (transition: libvigraimpex)

-- System Information:
Debian Release: stretch/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 4.3.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
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Bug#812852: Fwd: Re: Vigra auf ppc64el

[Daniel Stender]

 Forwarded Message 
Subject: Re: Vigra auf ppc64el
Date: Fri, 4 Mar 2016 15:56:16 +0100
From: Ullrich Koethe <ullrich.koe...@iwr.uni-heidelberg.de>
To: Daniel Stender <sten...@debian.org>
CC: Francesco Biscani <bluesca...@gmail.com>

Hallo Daniel,

unfortunately, we can't investigate this problem ourselves because we 
don't have access to a ppc system. Here are some ideas what you could try:

* Enable another set of threading primitives by passing

-DWITH_BOOST_THREAD=1

to cmake. If the error goes away, the problem might be in the threading 
bits of Vigra or (less likely) in an outdated version of std::thread.

* Remove all occurencies of threading::memory_order* in 
multi_array_chunked.hxx (or equivalently, replace them with 
threading::memory_order_seq_cst). This will force all atomic accesses to 
use sequentially consistent ordering, the most strict possibility.

* compile + run with various sanitizers. Specifically, you should look 
into the address, undefined behaviour and thread sanitizer. The first 
two can be enabled with the gcc/clang command line flags:

  -fsanitize=undefined,address

The third one with:

  -fsanitize=thread

Alternatively or in addition

   valgrind --tool=helgrind ./tests/test_executable
   valginrd --tool=drd ./tests/test_executable

might be useful.

* It would be helpful to know if the problem is deterministic or not. Do 
multiple runs of the same test produce the same errors?

Best
Francesco and Ulli

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Bug#814606: libvigraimpex: FTBFS on armel (error: return type 'class std::future')

[Daniel Stender]

On 01.03.2016 19:16, Ullrich Koethe wrote:
>>> so, please run cmake with the flag "-DWITH_BOOST_THREAD=1".
>>
>> Yup, that works.
> 
> Great. Ideally, we would like to activate this flag automatically for 
> non-conforming compilers, or at least issue a warning. Is there a way for 
> cmake to recognize your platform and toolchain?

I'll figure something out ...

DS

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Bug#814606: libvigraimpex: FTBFS on armel (error: return type 'class std::future')

[Daniel Stender]

On Tue, 1 Mar 2016 11:21:49 +0100 Ullrich Koethe 
 wrote:
> Since your toolchain apparently has no conforming implementation of 
> std::thread, you might want to try boost::thread as a fall-back. To do 
> so, please run cmake with the flag "-DWITH_BOOST_THREAD=1".
> 
> Best
> Ulli

Yup, that works.

-- ** WARNING: You are compiling in C++98 mode.
-- **  Multiarray tests will be skipped.
-- **  Add -std=c++11 to CMAKE_CXX_FLAGS to enable multiarray tests.

but that's no problem. Much thanks.

DS

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Bug#812850: libvigraimpex: fail of test/impex

[Daniel Stender]

On 26.02.2016 10:54, Ullrich Koethe wrote:
>> test/impex currently fail due to some problems with EXR:
>>
>> Running test_impex
>> Precondition violation!
>> exportImage(): file format does not support requested number of bands (color 
>> channels)
> 
> This error has been fixed in VIGRA version-1-11-rc on github.
> 
> Best
> Ulli (VIGRA maintainer)

Great. Thank you very much for the info.

DS

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Bug#812560: libvigraimpex: should support multiarch

[Daniel Stender]

Multiarch support for libvigraimpex is ready and coming up very soon.

There's a Lintian complaint on /usr/bin/vigra-config being old style. I've 
decided to
remove this script from libvigraimpex-dev for now. I'm going to set up 
pkg-config for
Vigra instead and report this problem upstream.

DS

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Bug#813415: libvigraimpex5v5: soname bump without package name change

[Daniel Stender]

On 14.02.2016 08:51, Andreas Metzler wrote:
> On 2016-02-13 Daniel Stender <deb...@danielstender.com> wrote:
>> On 13.02.2016 07:52, Andreas Metzler wrote:
> [...]
>>> Is there something I can do to help? Currently reverse dependencies are
>>> broken, due to a binNMU hugin in *testing* will not run at all.
> 
>> Thanks for the note and the offer. If you would have suggestions how to make
>> Vigra run on the failing archs again, and what might be the background of
>> #812850 (fail of test/impex on EXR) that would be very much welcome ...
> 
> Hello,
> 
> I cannot help a lot there, except for also involving upstream
> <http://article.gmane.org/gmane.comp.video.vigra/537>.
> 
> Still, could you please fix the package misnaming issue with high
> priority? - It should not wait on a fix for the build-errors.
> 
> cu Andreas

Hi Andreas,

yes, o.k. The changes a are already in the repo, it's going into Experimental 
very
shortly. Fixing for all arches happens then.

DS

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Bug#813415: libvigraimpex5v5: soname bump without package name change

[Daniel Stender]

On 13.02.2016 10:32, Andreas Metzler wrote:
> On 2016-02-13 Daniel Stender <deb...@danielstender.com> wrote:
> [...]
>> Ubuntu has patched -O2 for -O3 on ppc64el, but it's -O2 anyway. Is Ubuntu
>> building with -O3?
> 
> Yes, Ubuntu is building with -O3 by default, at least on some archs.

Ah, yes, o.k. I'll take this in, then,

Thx,
Daniel

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Bug#813415: libvigraimpex5v5: soname bump without package name change

[Daniel Stender]

On 13.02.2016 10:37, Andreas Metzler wrote:
> On 2016-02-13 Daniel Stender <deb...@danielstender.com> wrote:
>> On 13.02.2016 07:52, Andreas Metzler wrote:
> [...] 
>>> You are going for 1.11 rc1, I assume?
> 
>> That's a good idea! That's not official release candidate but would
>> be much clearer.
> 
> According to dpkg-gensymbols the ABI has not changed from
> 1.10.0+git20160120.803d5d4 to 1.11 rc1 branch.
> 
> Trivial patches attached.
> 
> cu Andreas

Ah, there's a branch, all right! Thx for the ABI check.

I'm going to build everything against Python 3 then.

Good stuff, thank you.

Dan

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Bug#813415: libvigraimpex5v5: soname bump without package name change

[Daniel Stender]

On 01.02.2016 18:52, Andreas Metzler wrote:
> Package: libvigraimpex5v5
> Version: 1.10.0+git20160120.803d5d4-1
> Severity: grave
> Justification: renders package unusable
> 
> (sid)ametzler@argenau:/usr/bin$ hugin
> hugin: error while loading shared libraries: libvigraimpex.so.5: cannot open 
> shared object file: No such file or directory
> 
> Going from 1.10.0+dfsg-11 to 1.10.0+git20160120.803d5d4-1 there is a
> soname change without a corresponding package name change. All reverse
> dependencies are broken:
> 
> 1. Uploaded before vigra: The stop running
> 2. Uploaded after vigra: They are built against the new vigra but
> still depend on libvigraimpex5v5. They will stop running if the reach
> testing.
> (sid)ametzler@argenau:/usr/bin$ for i in 
> /var/cache/apt/archives/libvigraimpex5v5_1.10.0+* ; do basename $i ; dpkg 
> --contents $i | grep '/usr/lib/l' ; done
> libvigraimpex5v5_1.10.0+dfsg-11_amd64.deb
> -rw-r--r-- root/root530744 2015-10-02 17:23 
> ./usr/lib/libvigraimpex.so.5.1.10.0
> lrwxrwxrwx root/root 0 2015-10-02 17:23 ./usr/lib/libvigraimpex.so.5 
> -> libvigraimpex.so.5.1.10.0
> libvigraimpex5v5_1.10.0+git20160120.803d5d4-1_amd64.deb
> -rw-r--r-- root/root543296 2016-01-27 07:30 
> ./usr/lib/libvigraimpex.so.6.1.10.0
> lrwxrwxrwx root/root 0 2016-01-27 07:30 ./usr/lib/libvigraimpex.so.6 
> -> libvigraimpex.so.6.1.10.0
> 
> cu Andreas

Hi Andreas,

I've expected this bug to appear now. I've already prepared a fix for -2, it's 
coming up very soon. 

Daniel

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Bug#812852: libvigraimpex: FTBFS on ppc64el

[Daniel Stender]

Source: libvigraimpex
Version: 1.10.0+git20160120.803d5d4-1
Severity: important

Latest package of libvigraimpex FTBFS on ppc64el:


Running test_multiarray_chunked
cd /«BUILDDIR»/libvigraimpex-1.10.0+git20160120.803d5d4/obj/test/multiarray && 
./run_test_multiarray_chunked.sh
chunked multi array test for type N5vigra16ChunkedArrayFullILj3EhSaIhEEE: 
 chunked iterator speed #
baseline:  57.012 msec
chunked multi array test for type N5vigra16ChunkedArrayFullILj3EhSaIhEEE: 
read time: 58.824 msec (cache: 0)
chunked multi array test for type N5vigra16ChunkedArrayLazyILj3EhSaIhEEE: 
loop time: 67.8101 msec (cache: 0)
chunked multi array test for type N5vigra16ChunkedArrayLazyILj3EhSaIhEEE: 
read time: 73.9331 msec (cache: 0)
chunked multi array test for type N5vigra22ChunkedArrayCompressedILj3EhSaIhEEE: 
read time: 76.802 msec (cache: 17)
chunked multi array test for type N5vigra19ChunkedArrayTmpFileILj3EhEE: 
read time: 74.7571 msec (cache: 17)
chunked multi array test for type N5vigra19ChunkedArrayTmpFileILj3EhEE: 
read time: 73.959 msec (cache: 64)
chunked multi array test for type N5vigra16ChunkedArrayHDF5ILj3EhSaIhEEE: 
read time: 80.1941 msec (cache: 17)
chunked multi array test for type N5vigra16ChunkedArrayHDF5ILj3EhSaIhEEE: 
read time: 73.937 msec (cache: 64)
chunked multi array test for type N5vigra16ChunkedArrayFullILj3EfSaIfEEE: 
 chunked iterator speed #
baseline:  56.812 msec
chunked multi array test for type N5vigra16ChunkedArrayFullILj3EfSaIfEEE: 
read time: 58.2681 msec (cache: 0)
chunked multi array test for type N5vigra16ChunkedArrayLazyILj3EfSaIfEEE: 
loop time: 67.8621 msec (cache: 0)
chunked multi array test for type N5vigra16ChunkedArrayLazyILj3EfSaIfEEE: 
read time: 73.8601 msec (cache: 0)
chunked multi array test for type N5vigra22ChunkedArrayCompressedILj3EfSaIfEEE: 
chunked multi array test for type N5vigra19ChunkedArrayTmpFileILj3EfEE: 
read time: 76.1699 msec (cache: 17)
chunked multi array test for type N5vigra19ChunkedArrayTmpFileILj3EfEE: 
read time: 73.9448 msec (cache: 64)
chunked multi array test for type N5vigra16ChunkedArrayHDF5ILj3EfSaIfEEE: 
read time: 93.561 msec (cache: 17)
chunked multi array test for type N5vigra16ChunkedArrayHDF5ILj3EfSaIfEEE: 
read time: 73.937 msec (cache: 64)
chunked multi array test for type N5vigra16ChunkedArrayFullILj3EdSaIdEEE: 
 chunked iterator speed #
baseline:  55.7668 msec
chunked multi array test for type N5vigra16ChunkedArrayFullILj3EdSaIdEEE: 
read time: 58.3572 msec (cache: 0)
chunked multi array test for type N5vigra16ChunkedArrayLazyILj3EdSaIdEEE: 
loop time: 67.3979 msec (cache: 0)
chunked multi array test for type N5vigra16ChunkedArrayLazyILj3EdSaIdEEE: 
read time: 75.28 msec (cache: 0)
chunked multi array test for type N5vigra22ChunkedArrayCompressedILj3EdSaIdEEE: 
chunked multi array test for type N5vigra19ChunkedArrayTmpFileILj3EdEE: 
read time: 77.926 msec (cache: 17)
chunked multi array test for type N5vigra19ChunkedArrayTmpFileILj3EdEE: 
read time: 74.0042 msec (cache: 64)
chunked multi array test for type N5vigra16ChunkedArrayHDF5ILj3EdSaIdEEE: 
read time: 169.513 msec (cache: 17)
chunked multi array test for type N5vigra16ChunkedArrayHDF5ILj3EdSaIdEEE: 
read time: 73.9629 msec (cache: 64)
chunked multi array test for type N5vigra16ChunkedArrayFullILj3EhSaIhEEE: 
## indexing speed 
baseline:  22.3992 msec
chunked multi array test for type N5vigra16ChunkedArrayFullILj3EhSaIhEEE: 
indexing:  45.7122 msec (cache: 0)
chunked multi array test for type N5vigra16ChunkedArrayLazyILj3EhSaIhEEE: 
indexing:  45.9351 msec (cache: 0)
chunked multi array test for type N5vigra22ChunkedArrayCompressedILj3EhSaIhEEE: 
indexing:  45.6821 msec (cache: 64)
chunked multi array test for type N5vigra19ChunkedArrayTmpFileILj3EhEE: 
indexing:  46.071 msec (cache: 64)
chunked multi array test for type N5vigra16ChunkedArrayHDF5ILj3EhSaIhEEE: 
indexing:  47.123 msec (cache: 64)
chunked multi array test for type N5vigra16ChunkedArrayFullILj3EfSaIfEEE: 
## indexing speed 
baseline:  24.6499 msec
chunked multi array test for type N5vigra16ChunkedArrayFullILj3EfSaIfEEE: 
indexing:  53.0498 msec (cache: 0)
chunked multi array test for type N5vigra16ChunkedArrayLazyILj3EfSaIfEEE: 
indexing:  52.9651 msec (cache: 0)
chunked multi array test for type N5vigra22ChunkedArrayCompressedILj3EfSaIfEEE: 
chunked multi array test for type N5vigra19ChunkedArrayTmpFileILj3EfEE: 
indexing:  54.356 msec (cache: 64)
chunked multi array test for type N5vigra16ChunkedArrayHDF5ILj3EfSaIfEEE: 
indexing:  53.0901 msec (cache: 64)
chunked multi array test for type N5vigra16ChunkedArrayFullILj3EdSaIdEEE: 
## indexing speed 
baseline:  24.856 msec
chunked 

Bug#812850: libvigraimpex: fail of test/impex

[Daniel Stender]

Source: libvigraimpex
Version: 1.10.0+git20160120.803d5d4-1
Severity: normal

test/impex currently fail due to some problems with EXR:


Running test_impex
cd /«BUILDDIR»/libvigraimpex-1.10.0+git20160120.803d5d4/obj/test/impex && 
./run_test_impex.sh
TIFFOpen: intentionalFailure/foo.tiff: No such file or directory.
Entering test suite ImageImportExportTestSuite

Failure in PositionTest::testEXRPosition()
Unexpected Contract exception:  
Precondition violation!
exportImage(): file format does not support requested number of bands (color 
channels)
(/«BUILDDIR»/libvigraimpex-1.10.0+git20160120.803d5d4/include/vigra/impex.hxx:548)


1 of 76 tests failed in test suite ImageImportExportTestSuite


DS

-- System Information:
Debian Release: stretch/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 4.3.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
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Bug#812577: gummi: Gummi fails to locate pictures after ugrade to 0.6.5-3+deb8u1

[Daniel Stender]

Control: tags + confirmed

Yes, that's right. Please excuse that mistake.

I'm in contact with upstream and he's going to release a new upstream tarball
including a fix for CVE 2015-7758 which doesn't has that side effect in the next
days. I'm going to package it immediately and provide an update for Jessie, as
soon as it's possible.

DS

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Bug#812560: libvigraimpex: should support multiarch

[Daniel Stender]

Source: libvigraimpex
Version: 1.10.0+dfsg-11
Severity: wishlist

As suggested by Tobias Frost, Vigra should support multiarch.

DS

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Bug#811370: libvigraimpex: FTBFS in sid: test suite failure due to pynum 1.10

[Daniel Stender]

On 24.01.2016 18:04, Tobias Frost wrote:
> Control: block 650601 by -1 
> 
> Hi Daniel,
> 
> any progress?
> 
> I'm nagging because this library is a reverse B-D for some pacakages --
> blocking the libpng transition.
> 
> Tobi

Hi Tobias,

I can't get the isolated "compatibility fixes for numpy 1.10" changeset to run 
as a patch, but
begun to package the latest repository snapshot instead. I'm working on 
updating the patches, and
a fix for this bug is going to be available very soon (tomorrow).

Daniel

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Bug#811370: libvigraimpex: FTBFS in sid: test suite failure due to pynum 1.10

[Daniel Stender]

On 18.01.2016 12:48, Tobias Frost wrote:
> Source: libvigraimpex
> Version: 1.10.0+dfsg-11
> Severity: serious
> Justification: FTBFS
> 
> Hi Daniel,
> 
> In the course of the libpng transition I rebuilt also this package, and it 
> FTBFS.
> The buildlog is here: http://libpng.sviech.de/old/keep/libvigraimpex.build
> 
> Cause seems to be the new pynum version, upstream has already a patch [1]
> I did not check if the patch work.
> 
> --
> tobi
> 
> 
> [1] 
> https://github.com/ukoethe/vigra/commit/ca2246798fed70e8a7bd0994f22ee9f857e9aba0.patch
> 
> -- System Information:
> Debian Release: stretch/sid
>   APT prefers stable-updates
>   APT policy: (500, 'stable-updates'), (500, 'testing'), (500, 'stable')
> Architecture: amd64 (x86_64)
> Foreign Architectures: i386
> 
> Kernel: Linux 4.3.0-1-amd64 (SMP w/4 CPU cores)
> Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
> Shell: /bin/sh linked to /bin/dash
> Init: systemd (via /run/systemd/system)

Hi Tobias,

thanks for the bug report. I'll get into this quick.

Greetings,
Daniel

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Bug#802318: scoop: FTBFS: test break on Python 3.5 in reproducible builds CI

[Daniel Stender]

Control: severity -1 normal

Since current Scoop now builds again in reproducible builds CI I'm lowering the
severity of this bug. Nevertheless, it may be that something which can be 
improved
has been triggered, so I leave it open.

DS

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Bug#802318: scoop: FTBFS: test break on Python 3.5 in reproducible builds CI

[Daniel Stender]

Source: scoop
Version: 0.7.1-3
Severity: serious
Justification: fails to build from source

Unittest on StopWatch() in scoop._types breaks on Python 3.5 in a reproducible
builds CI environment:


: pybuild base:170: cd /tmp/buildd/scoop-0.7.1/test; python3.5 tests.py
...F..
==
FAIL: test_resume (tests_stopwatch.TestStopWatch)
--
Traceback (most recent call last):
  File "/tmp/buildd/scoop-0.7.1/test/tests_stopwatch.py", line 35, in 
test_resume
self.assertAlmostEqual(second - first, 0.1, places=2)
AssertionError: 0.10783934593200684 != 0.1 within 2 places

--
Ran 77 tests in 53.488s

FAILED (failures=1)


I'm going to get into this, soon.

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Bug#756432: possible security issue on gummi/0.6.5-3

[Daniel Stender]

On 08.10.2015 13:00, Salvatore Bonaccorso wrote:
> Hello Daniel,
> 
> On Thu, Oct 08, 2015 at 12:20:27PM +0200, Daniel Stender wrote:
>> Hello,
>>
>> there was a bug reported on gummi/0.6.5-3 [1], the program uses
>> predictable filenames in /tmp [2].
>>
>> I'm going to fix that problem now (upstream is dead). Question: do
>> we have a (minor) security related problem here, which also needs to
>> be fixed for stable? I've learned from another case that this might
>> be a problematic race condition [3].
> 
> Thanks for going to fix this in unstable already. For wheezy and
> jessie: This issue does not warrant on it's own a DSA, in particular
> since such issues are mitigated in Debian: cf.
> https://www.debian.org/releases/stable/amd64/release-notes/ch-whats-new.en.html#security
> 
> But: Could you fix this in wheezy and jessie via the proposed-updates
> mechanism? See
> https://www.debian.org/doc/manuals/developers-reference/ch05.en.html#upload-stable
> 
> Regards,
> Salvatore

Thx for the quick reply!

Yes, o.k., I'm going to fix this as non-dsa over proposed updates. I guess
a CVE request on this is not necessary, is it? Are you going to create an
entry in the security tracker, anyway? 

DS

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Bug#756432: CVE request: Gummi

[Daniel Stender]

Hello,

I request a CVE for Gummi (LaTeX editor with preview pane) [1], the current
release is 0.6.5.

The program uses predictable filenames for files in /tmp, which produces a race
condition [2].

I'm Debian maintainer for this software.

Please assign a CVE as appropriate.

Thanks,
Daniel Stender

[1] https://github.com/alexandervdm/gummi

[2] https://bugs.debian.org/756432
gummi: Uses predictable filenames in /tmp based on basename

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Bug#794736: libvigraimpex: library transitions

[Daniel Stender]

Uploaded to unstable.

DS

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Bug#794736: libvigraimpex: library transition is needed when GCC 5 is the default

[Daniel Stender]

Control: tags -1 - pending

Removing tag pending like Emilio did it for #753044.

DS

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Bug#794736: libvigraimpex: library transition is needed when GCC 5 is the default

[Daniel Stender]

The transition(s) of Vigra (1.10.0 and lib5v5) is just around the corner. We're
checking the reverse-deps, all works/builds fine instead of current 3depict [1],
and I've faced some problems with libreoffice ([2], also not related to 
libvigraimpex-dev,
though). Yet little busy, but this is going to completed soon.

Thanks,
Daniel Stender

[1] https://bugs.debian.org/798858
3depict: FTBFS against mathgl 2.3.3

[2] 
http://www.danielstender.com/vigra/libreoffice_5.0.1-1_amd64-20150911-2300.build

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Bug#794853: libvigraimpex: non DFSG file in the source package

[Daniel Stender]

Control: severity -1 normal

With the removal/replacement of the lenna images we are getting into a
big problem with Vigra. Just this might demonstrate it:

$ find ./ -name lenna\*
./src/examples/lenna_color.gif
./src/examples/lenna_stripes.gif
./src/examples/lenna_color_small.gif
./src/examples/lenna.bmp
./src/examples/lenna_transposed.gif
./src/examples/lenna_small.gif
./src/examples/lenna_sub.gif
./src/examples/lenna_gray.gif
./src/examples/tutorial/lenna_color.gif
./src/examples/tutorial/lenna_color_small.gif
./src/examples/tutorial/lenna_composite_color.gif
./src/examples/tutorial/lenna_smoothed.gif
./src/examples/tutorial/lenna_small.gif
./src/examples/tutorial/lenna_inverted_color.gif
./src/examples/tutorial/lenna_gray.gif
./src/images/lenna_color.gif
./src/images/lenna_stripes.gif
./src/images/lenna_color_small.gif
./src/images/lenna_composite_color.gif
./src/images/lenna_smoothed.gif
./src/images/lenna_mirror_vertical.gif
./src/images/lenna_transposed_minor.gif
./src/images/lenna_inverted.gif
./src/images/lenna_small.gif
./src/images/lenna_sub.gif
./src/images/lenna_mirror_horizontal.gif
./src/images/lenna_gray.gif
./src/images/lenna_transposed_major.gif
./test/imgproc/lennargb42FIR.xv
./test/imgproc/lenna42lin.xv
./test/imgproc/lenna_rotate.xv
./test/imgproc/lenna42linrgb.xv
./test/imgproc/lenna128rgb.xv
./test/imgproc/lenna367FIR.xv
./test/imgproc/lenna128.xv
./test/imgproc/lenna288rgbneu.xv
./test/imgproc/lenna42neu.xv
./test/imgproc/lenna42rgbneu.xv
./test/imgproc/lenna42FIR.xv
./test/imgproc/lenna288rgb.xv
./test/imgproc/lenna288neu.xv
./test/imgproc/lenna42rgb.xv
./test/imgproc/lenna42.xv
./test/imgproc/lennargb42IIR.xv
./test/imgproc/lenna42IIR.xv
./test/imgproc/lenna288.xv
./test/imgproc/lenna367IIR.xv
./test/simpleanalysis/lenna128.xv
./test/convolution/lenna128rgb.xv
./test/convolution/lennahessxx.xv
./test/convolution/lennastxy.xv
./test/convolution/lenna_level-1.xv
./test/convolution/lenna128nonlinear.xv
./test/convolution/lenna_gaussian_sharpening_orig.xv
./test/convolution/lenna128.xv
./test/convolution/lenna_levellap0.xv
./test/convolution/lenna_level-2.xv
./test/convolution/lenna_levellap2.xv
./test/convolution/lenna_level1.xv
./test/convolution/lenna128sepgrad.xv
./test/convolution/lennastyy.xv
./test/convolution/lennargbst.xv
./test/convolution/lenna128rgbsepgrad.xv
./test/convolution/lenna_level2.xv
./test/convolution/lenna128recgrad.xv
./test/convolution/lennahessyy.xv
./test/convolution/lenna_simple_sharpening_orig.xv
./test/convolution/lenna_levellap1.xv
./test/convolution/lennastxx.xv
./test/convolution/lennahessxy.xv
./test/slic2d/lenna.xv
./test/image/lenna.xv
./test/image/lenna.gif
./test/impex/lenna_masked_gray.tif
./test/impex/lenna_0.tif
./test/impex/lennargb.xv
./test/impex/lennafloatrgb.xv
./test/impex/lenna_masked_color.tif
./test/impex/lenna_1.tif
./test/impex/lenna.xv
./test/impex/lenna_gifref.xv
./test/impex/lenna_2.tif
./test/impex/lennafloat.xv

I've informed upstream about that there might be a distribution problem for 
Debian with
the images already on 15-07-22 (https://github.com/ukoethe/vigra/issues/253).

Please let me lower the severity of this bug to prevent an AUTORM to get 
triggered on
this issue, soon. We are going to deal with this, but we have the Vigra 
transition and the
libstdc++ transition on Vigra going on right now. Furthermore, on the devel 
list there is
currently a discussion going on the images which also doesn't came to a 
conclusion on the
actual state of license of the image set [1].

Thanks,
DS

[1] https://lists.debian.org/debian-devel/2015/08/msg00169.html
 
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Bug#794736: libvigraimpex: library transition is needed when GCC 5 is the default

[Daniel Stender]

We have a SONAME bump happening due to the Vigra 1.10.0 transition [1] which
generally could let spare a v5 package when the two transitions would be 
combined,
isn't it?

However, I think it's better to adopt what has been already changed for 
1.10.0+dfsg-9ubuntu1
to update Vigra for 15.10 (renaming libvigraimpex5 to libvigraimpexv5 and 
rebuild) - there's
really no need to avoid this.

We have some other serious issues open for Vigra (with the Lenna image set [2] 
and test suite
problems in Mips), so I suggest we do it that way: I'm going to prepare a v5 
1.9.0+dfsg-11
for unstable in the next days and check the reverse deps. After that we go for 
a v5
1.10.0+dfsg-10 in experimental and check the reverse deps on that, that would 
close the
stdc++6 transition as the next thing to do on Vigra.

Daniel

[1] https://bugs.debian.org/793044 (transition: libvigraimpex)

[2] https://lists.debian.org/debian-devel/2015/08/msg00090.html

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Bug#785605: gummi: Clicking Project and then Open Project results in segfault.

[Daniel Stender]

Thank you for reporting this bug. I've forwarded it immediately.

Best,
Daniel Stender

On 18.05.2015 11:18, Charles L. wrote:
 Package: gummi
 Version: 0.6.5-4
 Severity: normal
 
 Dear Maintainer,
 
 Clicking on project and the Open Project results in segfault.
 
 I used the debian wiki on backtracing to obtain the following:
 
 
 Program received signal SIGSEGV, Segmentation fault.
 strlen () at ../sysdeps/x86_64/strlen.S:106
 106 ../sysdeps/x86_64/strlen.S: No such file or directory.
 (gdb) Quit
 (gdb) bt
 #0  strlen () at ../sysdeps/x86_64/strlen.S:106
 #1  0x77b35123 in g_strdup () from /lib/x86_64-linux-
 gnu/libglib-2.0.so.0
 #2  0x762a6b2c in ?? () from /usr/lib/x86_64-linux-
 gnu/libgobject-2.0.so.0
 #3  0x7628564b in g_object_new_valist () from /usr/lib/x86_64-linux-
 gnu/libgobject-2.0.so.0
 #4  0x762859e1 in g_object_new () from /usr/lib/x86_64-linux-
 gnu/libgobject-2.0.so.0
 #5  0x77362b0d in gtk_file_chooser_dialog_new_valist
 (title=0x3b1984e2c6feb000 error: Cannot access memory at address
 0x3b1984e2c6feb000, parent=0x6ae580, action=GTK_FILE_CHOOSER_ACTION_OPEN,
 first_button_text=0x432654 gtk-cancel, varargs=varargs@entry=0x7fffd2a0,
 backend=0x0) at
 /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gtk/gtkfilechooserdialog.c:398
 #6  0x77362c1a in IA__gtk_file_chooser_dialog_new (title=optimized
 out, parent=optimized out, action=optimized out,
 first_button_text=optimized out) at
 /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gtk/gtkfilechooserdialog.c:442
 #7  0x0041b875 in get_open_filename (type=TYPE_PROJECT) at gui/gui-
 main.c:782
 #8  0x0041742b in on_menu_projopen_activate (widget=0x7b6040, 
 user=0x0)
 at gui/gui-menu.c:641
 #9  0x7627e2d5 in g_closure_invoke () from /usr/lib/x86_64-linux-
 gnu/libgobject-2.0.so.0
 #10 0x7629003c in ?? () from /usr/lib/x86_64-linux-
 gnu/libgobject-2.0.so.0
 #11 0x76298698 in g_signal_emit_valist () from /usr/lib/x86_64-linux-
 gnu/libgobject-2.0.so.0
 #12 0x762988ff in g_signal_emit () from /usr/lib/x86_64-linux-
 gnu/libgobject-2.0.so.0
 #13 0x774c5af6 in IA__gtk_widget_activate
 (widget=widget@entry=0x7b6040) at
 /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gtk/gtkwidget.c:5041
 #14 0x773c194d in IA__gtk_menu_shell_activate_item
 (menu_shell=0x7b5150, menu_item=0x7b6040, force_deactivate=optimized out) at
 /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gtk/gtkmenushell.c:1276
 #15 0x773c1ceb in gtk_menu_shell_button_release (widget=0x7b5150,
 event=optimized out) at
 /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gtk/gtkmenushell.c:703
 #16 0x773afa3f in _gtk_marshal_BOOLEAN__BOXED (closure=0x6a1230,
 return_value=0x7fffda70, n_param_values=optimized out,
 param_values=0x7fffdb20, invocation_hint=optimized out,
 marshal_data=0x773b70d0 gtk_menu_button_release) at
 /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gtk/gtkmarshalers.c:86
 #17 0x7627e2d5 in g_closure_invoke () from /usr/lib/x86_64-linux-
 gnu/libgobject-2.0.so.0
 #18 0x7628ff32 in ?? () from /usr/lib/x86_64-linux-
 gnu/libgobject-2.0.so.0
 #19 0x762981a5 in g_signal_emit_valist () from /usr/lib/x86_64-linux-
 gnu/libgobject-2.0.so.0
 #20 0x762988ff in g_signal_emit () from /usr/lib/x86_64-linux-
 gnu/libgobject-2.0.so.0
 #21 0x774c6d6c in gtk_widget_event_internal
 (widget=widget@entry=0x7b5150, event=event@entry=0x7fe080) at
 /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gtk/gtkwidget.c:5010
 #22 0x774c7061 in IA__gtk_widget_event (widget=widget@entry=0x7b5150,
 event=event@entry=0x7fe080) at
 /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gtk/gtkwidget.c:4807
 #23 0x773ae184 in IA__gtk_propagate_event (widget=0x7b5150,
 event=0x7fe080) at /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gtk/gtkmain.c:2490
 #24 0x773ae61b in IA__gtk_main_do_event (event=0x7fe080) at
 /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gtk/gtkmain.c:1685
 #25 0x77021b5c in gdk_event_dispatch (source=optimized out,
 callback=optimized out, user_data=optimized out) at
 /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gdk/x11/gdkevents-x11.c:2425
 #26 0x77b16c3d in g_main_context_dispatch () from /lib/x86_64-linux-
 gnu/libglib-2.0.so.0
 #27 0x77b16f20 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0
 #28 0x77b17242 in g_main_loop_run () from /lib/x86_64-linux-
 gnu/libglib-2.0.so.0
 #29 0x773ad597 in IA__gtk_main () at
 /build/gtk+2.0-czQfyJ/gtk+2.0-2.24.25/gtk/gtkmain.c:1257
 #30 0x00419f5c in gui_main (builder=0x69ac30) at gui/gui-main.c:280
 #31 0x0042fd91 in main (argc=1, argv=0x7fffe198) at main.c:171
 
 Please let me know if I can be of further assistance.
 
 
 Regards,
 
 Charles
 
 
 
 -- System Information:
 Debian Release: stretch/sid
   APT prefers unstable
   APT policy: (500, 'unstable'), (1, 'experimental')
 Architecture: amd64 (x86_64)
 Foreign Architectures: i386
 
 Kernel: Linux 3.16.0-4-amd64 (SMP w/8 CPU cores

Bug#782258: scoop: non-determinism in docs package

[Daniel Stender]

Source: scoop
Version: 0.7.1-2
Severity: wishlist
User: reproducible-bui...@lists.alioth.debian.org
Usertags: timestamps

Current Scoop is not fit for reproducible building [1]. That is
going to fixed soon.

DS

[1] https://reproducible.debian.net/rb-pkg/unstable/amd64/scoop.html

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Bug#766970: python-scoop: Provide the Python 3 package

[Daniel Stender]

Control: tags -1 + pending

Here we go with the Python3 package:
http://mentors.debian.net/debian/pool/main/s/scoop/scoop_0.7.1-2.dsc

Greetings,
Daniel Stender

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Bug#766970: python-scoop: Provide the Python 3 package

[Daniel Stender]

Hi Frederic,

yes that's too late for Jessie.

Sure, welcome, I'll toggle it immediately. Thank you!

Greetings,
Daniel

If you want to sponsor that package one more time yes please be my
guest, that's all right with me.

On 01.11.2014 18:14, PICCA Frederic-Emmanuel wrote:
 Hello, 
 
 since we are close to the freeze and because your package add a new binary 
 package it will requiered to pass the new queue.
 So it will no be possible to have python3 package for scoop into jessie.
 
 nevertheless I propose to upload it targetting the experimental distribution 
 and reseve unstable for last minut fix if requiered by the release-team.
 
 Is it ok for you ?
 
 Cheers
 
 Frederic.
 
 so : just change in the changelog unstable for experimenta and I will upload 
 the package.
 
 thanks


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Re: nltk_3.0~b1-1_amd64.changes REJECTED

[Daniel Stender]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Thanks for checking the package - that naughty file slipped through.

We've now made a new package of the release upstream tarball which
doesn't contain that, plus we've checked everything over.

Greetings,
Daniel Stender

On 10.10.2014 09:00, Luca Falavigna wrote:
 Hi,
 
 nltk/text/FX8.xml contains the following terms:
 
 Distributed under licence by Oxford University Computing Services 
 on behalf of the BNC Consortium. This material is protected by 
 international copyright laws and may not be copied or redistributed
 in any way. Consult the BNC Web Site at http://www.natcorp.ox.ac.uk
 for full licencing and distribution conditions.
 
 It seems these rules apply: 
 http://www.natcorp.ox.ac.uk/docs/licence.html, which render this 
 file non redistributable.
 
 Cheers, Luca
 
 ===
 
 Please feel free to respond to this email if you don't understand 
 why your files were rejected, or if you upload new files which 
 address our concerns.

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