Accepted rheolef 7.0-1 (source) into unstable

[Pierre Saramito]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 30 Mar 2018 11:37:20 +0200
Source: rheolef
Binary: librheolef1 librheolef-dev rheolef-doc rheolef
Architecture: source
Version: 7.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Pierre Saramito <pierre.saram...@imag.fr>
Description:
 librheolef-dev - efficient Finite Element environment - development files
 librheolef1 - efficient Finite Element environment - shared library
 rheolef- efficient Finite Element environment
 rheolef-doc - efficient Finite Element environment - documentation
Changes:
 rheolef (7.0-1) unstable; urgency=medium
 .
   [ Pierre Saramito ]
   * new upstream release 7.0 (major changes):
  - new complex fluids applications and continuation nonlinear solver
  - memory management and files i/o improved
  - various ports and bug fixes
 .
   * d/control: add libarmadillo-dev and make to dependencies
Vcs-Browser: remove the .git at end
   * d/rules:   add --enable-permissive to the configure script
   * d/librheolef1.install: updated
   * d/copyright: updated to GPL3 for the upstream
   * d/patches: removed, since integrated in the upstream package
   * d/source/lintian-overrides: fix a lintian format error
 .
   [ Sébastien Villemot ]
   * Fix various issues in debian/copyright.
   * Use secure URL in debian/watch.
   * Remove duplicate Section in debian/control.
   * Fix lintian override for manpage section.
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Accepted rheolef 6.7-6 (source) into unstable

[Pierre Saramito]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 16 Feb 2018 12:19:06 +0100
Source: rheolef
Binary: librheolef1 librheolef-dev rheolef-doc rheolef
Architecture: source
Version: 6.7-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Pierre Saramito <pierre.saram...@imag.fr>
Description:
 librheolef-dev - efficient Finite Element environment - development files
 librheolef1 - efficient Finite Element environment - shared library
 rheolef- efficient Finite Element environment
 rheolef-doc - efficient Finite Element environment - documentation
Closes: 79
Changes:
 rheolef (6.7-6) unstable; urgency=medium
 .
   * d/rules:
 - autoconf/automake regeneration forced, since configure.ac is patched
 - dh_auto_test delayed to the next 7.0 upstream version (closes: #79)
   * d/*.install: pkglibdir changed to usr/lib/*/rheolef for multiarch
   * d/control:
 - Build-Depends: autoconf, automake & libtool added
 - Description: updated
   * d/patch: remove skip_failing_tests.patch
   * d/README.Debian: completed
   * d/compat: decreased from 11 to 9, for smooth (old)stable package building
  also decreased in d/control for debhelper dependency in Build-Depends
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Bug#888879: HELP needed for uploading a new debianisation of the Rheolef package

[Pierre Saramito]

Hi Andreas,

I just commit with git a new release 6.7-6 of the debianisation
of the rheolef package: it fixes a FTBS bug #79
It also fixes others issues related to the previous 6.7-5 version:
multiarch lib install directory and regeneration of
patched autoconf/automake files (see d/changelog).

The upstream version is unchanged (6.7).

Could you please upload it in debian ?

Many thanks for your help.

Best regards,

Pierre
--
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Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito

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Re: Rheolef moved to Git : problem to download/edit the debian files

[Pierre Saramito]

Hi Andreas,

> You need to register an account on salsa.debian.org and ask for
> membership of Debian Science team.  You also need to create your
> personal Gitlab token.

Ok, I'am asking for membership of Debian Science team 
together with an account on salsa.debian.org 
Who is managing this ?

Many thanks for your help,

Pierre
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Bug#888879: Rheolef moved to Git : problem to download/edit the debian files

[Pierre Saramito]

Hi Andreas,

Many thanks for your rewrite and modernization 
of the Debian files for the Rheolef package in rheolef-6.7-5.

For build time tests to run correctly,
I have now to patch these files,
but I have a technical problem:

  After the move from SVN to GIT of the package, I am no more able to download 
& edit the files. 

I need to download, edit and upload the debian files,
but I dont have any account on sources.debian.org 

  Any idea how to solve this in a simple way ?

Many thanks for your help for the Debianization of the package,

Pierre
--
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Bug#883987: rheolef: FTBFS error: partial specialization ... after instantiation ...

[Pierre Saramito]

Hi Graham,

> Would you please quote the bug number?  I failed to find your bug report.

Here is the bug report:

   https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=884185

Hummm... I just realize now that I have do a mistake and assign this bug
to libcgal-dev instead of libboost-dev package when using Debian "bugreport".


> I think the thing to do here is reassign this bug to src:boost1.62 and
> mark that it affects src:rheolef.

Do you known how to do that with the Debian bug system ?

Many thanks for your help solving this issue,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito


- Mail original -
De: "ginggs" <gin...@debian.org>
À: "PIERRE SARAMITO" <pierre.saram...@imag.fr>, "883987" 
<883...@bugs.debian.org>
Cc: "Andreas Beckmann" <a...@debian.org>
Envoyé: Mardi 12 Décembre 2017 20:26:18
Objet: Re: Bug#883987: rheolef: FTBFS error: partial specialization ... after 
instantiation ...

Hi Pierre

(cc-ing Andreas in case he is not subscribed)

On 12 December 2017 at 15:13, Pierre Saramito <pierre.saram...@imag.fr> wrote:
> Hi Andreas,
>
> This problem do neither comes from Rheolef-6.7 nor from CGAL-4.11:
> it comes from Boost-1.62 combined with g++ 7.2 in Debian sid and testing.
>
> The bug has already be identified in the upstream version of Boost :
>   https://svn.boost.org/trac10/ticket/12534
> and it is now fixed in the upstream version Boost-1.65:
>   
> https://github.com/boostorg/container/commit/5e4a107e82ab3281688311d22d2bfc2fddcf84a3
> but this version is not yet available in Debian.
>
> I've just send a bug report to the Boost package, together with a patch for 
> Boost-1.62
> and later, until we will get Boost-1.65 in Debian.
>
> See also in attachment for a small test "pair_tst.cc" and the corresponding 
> Boost patch "pair_tst.patch"
>
> I hope it will be fixed soon.
>
> Best regards,
>
> Pierre
> --
> pierre.saram...@imag.fr
> Directeur de Recherche CNRS
> Laboratoire Jean Kuntzmann, Grenoble, France
> http://ljk.imag.fr/membres/Pierre.Saramito

Would you please quote the bug number?  I failed to find your bug report.

I think the thing to do here is reassign this bug to src:boost1.62 and
mark that it affects src:rheolef.

Regards
Graham

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Bug#883987: rheolef: FTBFS error: partial specialization ... after instantiation ...

[Pierre Saramito]

Hi Andreas,

This problem do neither comes from Rheolef-6.7 nor from CGAL-4.11:
it comes from Boost-1.62 combined with g++ 7.2 in Debian sid and testing.

The bug has already be identified in the upstream version of Boost :
  https://svn.boost.org/trac10/ticket/12534
and it is now fixed in the upstream version Boost-1.65:
  
https://github.com/boostorg/container/commit/5e4a107e82ab3281688311d22d2bfc2fddcf84a3
but this version is not yet available in Debian.

I've just send a bug report to the Boost package, together with a patch for 
Boost-1.62
and later, until we will get Boost-1.65 in Debian.

See also in attachment for a small test "pair_tst.cc" and the corresponding 
Boost patch "pair_tst.patch"

I hope it will be fixed soon.

Best regards,

Pierre
--
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Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito
// bug description
// https://svn.boost.org/trac10/ticket/12534
// and its fix in boost-dev 1.65:
// https://github.com/boostorg/container/commit/5e4a107e82ab3281688311d22d2bfc2fddcf84a3
// i.e. remove from line 431 to 460 in include/boost/container/detail/pair.hpp

#undef FIX_BUG
#ifdef  FIX_BUG
#include 
#endif // FIX_BUG

#include 

static const bool is_enum = boost::is_enum >::value;

#include 

boost::container::flat_map m;

int main() {}
*** /usr/include/boost/container/detail/pair.hpp.orig	Tue Dec 12 12:15:26 2017
--- /usr/include/boost/container/detail/pair.hpp	Tue Dec 12 12:41:22 2017
***
*** 416,451 
  }  //namespace container_detail {
  }  //namespace container {
  
- 
- //Without this specialization recursive flat_(multi)map instantiation fails
- //because is_enum needs to instantiate the recursive pair, leading to a compilation error).
- //This breaks the cycle clearly stating that pair is not an enum avoiding any instantiation.
- template
- struct is_enum;
- 
- template
- struct is_enum< ::boost::container::container_detail::pair >
- {
-static const bool value = false;
- };
- 
- template
- struct is_enum< ::std::pair >
- {
-static const bool value = false;
- };
- 
- template 
- struct is_class;
- 
- //This specialization is needed to avoid instantiation of pair in
- //is_class, and allow recursive maps.
- template 
- struct is_class< ::boost::container::container_detail::pair >
- {
-static const bool value = true;
- };
- 
  #ifdef BOOST_NO_CXX11_RVALUE_REFERENCES
  
  template
--- 416,421 
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Bug#871811: FTBFS with CGAL 4.11

[Pierre Saramito]

Dear Joachim,

Many thanks for your patch: I am integrating it
in the debian files of the Rheolef package in order
to support the new CGAL 4.11 version.
Sorry for my late response, I was travelling 
in new zealand for conferences... 

The path for CGAL will be integrated in the fortcoming 
Rheolef upstream versions.


Kind regards,

Pierre
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Bug#826960: mumps: Please package with metis and parmetis

[Pierre Saramito]

Source: mumps
Severity: wishlist

Dear Adam,

It would be nice to have libmumps-metis-dev and libmumps-parmetis-dev
as alternatives to libmumps-scotch-dev and libmumps-ptscotch-dev packages:
please, could you package mumps with (par)metis also ?

Best wishes,

Pierre


-- System Information:
Debian Release: stretch/sid
  APT prefers testing-updates
  APT policy: (500, 'testing-updates'), (500, 'testing')
Architecture: i386 (i686)

Kernel: Linux 4.3.0-1-686-pae (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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Bug#811590: FTBFS with GCC 6: statement indented as if it were guarded by version graph

[Pierre Saramito]

Dear Martin Michlmayr,

Many thanks for your bug report.
A new upstream version rheolef-6.7 of the source package
should now compile with g++-6 and fix this bug.

Best wishes,

Pierre
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Bug#824788: FTBFS in sid: recipe for target 'rheolef.pdf' failed

[Pierre Saramito]

Dear Sébastien Villemot,

Many thanks for your bug report.
The new upstream version rheolef-6.7 should fix it now.

Best wishes,

Pierre
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Bug#778106: HELP needed for uploading a new version 6.6 of the Rheolef package (english translation)

[Pierre Saramito]

Here is an english translation of the previous message, for the bug tracker.


Hi Sylvestre !

I just commit in svn a new version the debianization of rheolef :
it fixes the problem related to g++ 5 in sid and testing (bug #778106 ).

This corresponds also to a new version 6.6 of the sources :
  http://www-ljk.imag.fr/membres/Pierre.Saramito/rheolef/rheolef-6.6.tar.gz

Could you please makes the changes in debian ?

Many thaks for your help,

Pierre
--
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Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito

- Mail original -
De: "Pierre Saramito" <pierre.saram...@imag.fr>
À: "Sylvestre Ledru" <sylves...@debian.org>, 778...@bugs.debian.org
Cc: "Pierre Saramito" <pierre.saram...@imag.fr>
Envoyé: Vendredi 25 Septembre 2015 13:20:09
Objet: HELP needed for uploading a new version 6.6 of the Rheolef package

Bonjour Sylvestre,

Je viens de remonter sous svn une nouvelle version de la debianisation de 
rheolef :
cela corrige le nouveau probleme a propos de g++ 5 sous sid et testing (bug 
#778106 ).

Cela correspond aussi a une nouvelle version 6.6 des sources :
  http://www-ljk.imag.fr/membres/Pierre.Saramito/rheolef/rheolef-6.6.tar.gz

Serait-il possible de faire le chargement dans debian ?

En te remerciant par avance,

Pierre
--
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Bug#778106: HELP needed for uploading a new version 6.6 of the Rheolef package

[Pierre Saramito]

Bonjour Sylvestre,

Je viens de remonter sous svn une nouvelle version de la debianisation de 
rheolef :
cela corrige le nouveau probleme a propos de g++ 5 sous sid et testing (bug 
#778106 ).

Cela correspond aussi a une nouvelle version 6.6 des sources :
  http://www-ljk.imag.fr/membres/Pierre.Saramito/rheolef/rheolef-6.6.tar.gz

Serait-il possible de faire le chargement dans debian ?

En te remerciant par avance,

Pierre
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HELP needed for uploading a new version of the Rheolef package

[Pierre Saramito]

Dear debian maintainers,

I just commit with svn a new release of the debianisation of the rheolef 
package.
   svn://anonscm.debian.org/debian-science/packages/rheolef/trunk
  http://anonscm.debian.org/viewsvn/debian-science/packages/rheolef/trunk

It is associated to a new upstream release 6.6 of the source package:
  http://www-ljk.imag.fr/membres/Pierre.Saramito/rheolef/rheolef-6.6.tar.gz

This version fixes an outstanding serious bug for this package.
See debian/changelog for more.

Could you please upload it in debian ?

Thank you by advance,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito


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Bug#748130: scotch autoremoval from jessie not usefull : only stable/amd64 package has RC bug

[Pierre Saramito]

Dear all,

The RC bug #748130 founded in the scotch library 
causes to mark for autoremoval many packages in the jessie distribution.

Notice that the bug do not concern the actual jessie distribution :
it is restricted to the stable one on the amd64 architecture.
Recall that, in that specific case, the actual stable/amd64 scotch package
links to both mipch and openmpi and this produce a segfault
at run time. A simple recompilation of the stable scotch packages
for amd64 should fix this bug (see bug #748130 for more).

So, the jessie scotch packages are not concerned by this bug and
all packages that depend one do not need to be marked for autoremoval.

Regards,

Pierre
-- 
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito

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Bug#748130: on wheezy/amd64: libscotch-5.1 depends on mpich while mpi-default is openmpi

[Pierre Saramito]

Package: libscotch-5.1
Version: 5.1.12b.dfsg-2+b1
Severity: serious

Hi all,

The stable (wheezy) debian package libscotch-5.1 depends on MPI lib as :

  dep: libmpich2-3   [amd64, mips, mipsel, s390, s390x]
  dep: libopenmpi1.3 [not amd64, mips, mipsel, s390, s390x]

while the mpi-default-bin package has the following dependencies :

  dep: mpich2   [mips, mipsel, s390, s390x]
  dep: openmpi-bin  [not mips, mipsel, s390, s390x]

The same bug occurs for all MPI-dependent packages from the scotch source 
package.
Thus, on amd64, the scotch library is not usable:
package depending on scotch will compile but segfault at run time.

A possible solution should be to recompile the wheezy/amd64 scotch package.

-- System Information:
Debian Release: wheezy
  APT prefers stable
  APT policy: (500, 'stable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 3.2.0-4-amd64 (SMP w/6 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages libscotch-5.1 depends on:
ii  libc6  2.13-38+deb7u1
ii  libcr0 0.8.5-2
ii  libmpich2-31.4.1-4.2
ii  zlib1g 1:1.2.7.dfsg-13

libscotch-5.1 recommends no packages.
libscotch-5.1 suggests no packages.
-- no debconf information

Yours sincerely,

Pierre Saramito
-- 
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito

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