Bug#800466: FTBFS: 4 failed tests with ValueError: could not broadcast input array

[Antonio Valentino]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Dear Gilles, Scott, Emilio,
I just prepared a new version of the package for the new upstream
release of PyTables: 3.2.2 [1], [2].
It should fix this bug.

I have just Yaroslav and Frédéric that are the people that usually
take in charge the task to upload PyTables packages.

Please feel free to upload it yourself if you want.


[1]
http://mentors.debian.net/debian/pool/main/p/pytables/pytables_3.2.2-1.d
sc
[2] git://anonscm.debian.org/debian-science/packages/pytables.git


regards

- -- 
Antonio Valentino
-BEGIN PGP SIGNATURE-
Version: GnuPG v2

iEYEARECAAYFAlYQFmoACgkQ1JUs2CS3bP58KACfafV+IBTZ4Ovb9JSFIVaOo49E
cOwAoKMe9C6WGF2Xtiv/SuCty+dc+sj/
=FyyL
-END PGP SIGNATURE-

-- 
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#800466: FTBFS: 4 failed tests with ValueError: could not broadcast input array

[Emilio Pozuelo Monfort]

On Wed, 30 Sep 2015 18:56:35 +0200 Emilio Pozuelo Monfort  
wrote:
> On Tue, 29 Sep 2015 21:28:07 +0200 Gilles Filippini  wrote:
> > On Tue, 29 Sep 2015 20:46:42 +0200 Gilles Filippini  wrote:
> > > Source: pytables
> > > Version: 3.2.1-1
> > > Severity: serious
> > > Justification: FTBFS
> > > 
> > > -BEGIN PGP SIGNED MESSAGE-
> > > Hash: SHA256
> > > 
> > > Hi,
> > > 
> > > pytables FTBFS on a clean amd64 sid chroot. 4 tests fail with similar
> > > error messages:
> > > ==
> > > ERROR: None (tables.tests.test_tables.RecArrayRangeTestCase)
> > > - --
> > > Traceback (most recent call last):
> > >   File 
> > > "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/tests/test_tables.py",
> > >  line 2169, in test01a_range
> > > self.check_range()
> > >   File 
> > > "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/tests/test_tables.py",
> > >  line 2042, in check_range
> > > recarray = table.read(self.start, self.stop, self.step)
> > >   File 
> > > "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/table.py", 
> > > line 1965, in read
> > > arr = self._read(start, stop, step, field, out)
> > >   File 
> > > "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/table.py", 
> > > line 1887, in _read
> > > self.row._fill_col(result, start, stop, step, field)
> > >   File "tables/tableextension.pyx", line 1272, in 
> > > tables.tableextension.Row._fill_col (tables/tableextension.c:15021)
> > > ValueError: could not broadcast input array from shape (2) into shape (0)
> > 
> > This is upstream issue #481 [1] which was fixed by commit 44dba04 [2].
> > 
> > [1] 
> > [2] 
> > 
> > 
> > I've successfully tested this patch, but then a python3.5 related error 
> > occurs:
> > 
> > Ran 5734 tests in 147.360s
> > 
> > OK (skipped=42)
> > + cd /tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-3.5
> > + env PYTHONPATH=. LOCPATH=/tmp/buildd/pytables-3.2.1/tmp-locales 
> > LC_ALL=en_US.UTF-8 python3.5 tables/tests/test_all.py -vvv
> > Traceback (most recent call last):
> >   File "tables/tests/test_all.py", line 10, in 
> > import tables
> >   File 
> > "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-3.5/tables/__init__.py", 
> > line 123, in 
> > from tables.file import File, open_file, copy_file, openFile, copyFile
> >   File 
> > "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-3.5/tables/file.py", 
> > line 31, in 
> > import numexpr
> >   File "/usr/lib/python3/dist-packages/numexpr/__init__.py", line 40, in 
> > 
> > from numexpr.expressions import E
> >   File "/usr/lib/python3/dist-packages/numexpr/expressions.py", line 45, in 
> > 
> > from numexpr import interpreter
> > ImportError: cannot import name 'interpreter'
> > debian/rules:58: recipe for target 'override_dh_install' failed
> > make[1]: *** [override_dh_install] Error 1
> > make[1]: Leaving directory '/tmp/buildd/pytables-3.2.1'
> > debian/rules:26: recipe for target 'binary' failed
> > make: *** [binary] Error 2
> 
> That's just because numexpr hasn't been rebuilt for the python 3.5 transition

That's happened now, so this shouldn't fail at that stage.

Emilio

-- 
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#800466: FTBFS: 4 failed tests with ValueError: could not broadcast input array

[Emilio Pozuelo Monfort]

On Tue, 29 Sep 2015 21:28:07 +0200 Gilles Filippini  wrote:
> On Tue, 29 Sep 2015 20:46:42 +0200 Gilles Filippini  wrote:
> > Source: pytables
> > Version: 3.2.1-1
> > Severity: serious
> > Justification: FTBFS
> > 
> > -BEGIN PGP SIGNED MESSAGE-
> > Hash: SHA256
> > 
> > Hi,
> > 
> > pytables FTBFS on a clean amd64 sid chroot. 4 tests fail with similar
> > error messages:
> > ==
> > ERROR: None (tables.tests.test_tables.RecArrayRangeTestCase)
> > - --
> > Traceback (most recent call last):
> >   File 
> > "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/tests/test_tables.py",
> >  line 2169, in test01a_range
> > self.check_range()
> >   File 
> > "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/tests/test_tables.py",
> >  line 2042, in check_range
> > recarray = table.read(self.start, self.stop, self.step)
> >   File 
> > "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/table.py", 
> > line 1965, in read
> > arr = self._read(start, stop, step, field, out)
> >   File 
> > "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/table.py", 
> > line 1887, in _read
> > self.row._fill_col(result, start, stop, step, field)
> >   File "tables/tableextension.pyx", line 1272, in 
> > tables.tableextension.Row._fill_col (tables/tableextension.c:15021)
> > ValueError: could not broadcast input array from shape (2) into shape (0)
> 
> This is upstream issue #481 [1] which was fixed by commit 44dba04 [2].
> 
> [1] 
> [2] 
> 
> 
> I've successfully tested this patch, but then a python3.5 related error 
> occurs:
> 
> Ran 5734 tests in 147.360s
> 
> OK (skipped=42)
> + cd /tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-3.5
> + env PYTHONPATH=. LOCPATH=/tmp/buildd/pytables-3.2.1/tmp-locales 
> LC_ALL=en_US.UTF-8 python3.5 tables/tests/test_all.py -vvv
> Traceback (most recent call last):
>   File "tables/tests/test_all.py", line 10, in 
> import tables
>   File 
> "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-3.5/tables/__init__.py", 
> line 123, in 
> from tables.file import File, open_file, copy_file, openFile, copyFile
>   File 
> "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-3.5/tables/file.py", line 
> 31, in 
> import numexpr
>   File "/usr/lib/python3/dist-packages/numexpr/__init__.py", line 40, in 
> 
> from numexpr.expressions import E
>   File "/usr/lib/python3/dist-packages/numexpr/expressions.py", line 45, in 
> 
> from numexpr import interpreter
> ImportError: cannot import name 'interpreter'
> debian/rules:58: recipe for target 'override_dh_install' failed
> make[1]: *** [override_dh_install] Error 1
> make[1]: Leaving directory '/tmp/buildd/pytables-3.2.1'
> debian/rules:26: recipe for target 'binary' failed
> make: *** [binary] Error 2

That's just because numexpr hasn't been rebuilt for the python 3.5 transition
yet, see:

https://release.debian.org/transitions/html/python3.5.html

It should work once that's done.

Emilio

-- 
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#800466: FTBFS: 4 failed tests with ValueError: could not broadcast input array

[Gilles Filippini]

On Tue, 29 Sep 2015 20:46:42 +0200 Gilles Filippini  wrote:
> Source: pytables
> Version: 3.2.1-1
> Severity: serious
> Justification: FTBFS
> 
> -BEGIN PGP SIGNED MESSAGE-
> Hash: SHA256
> 
> Hi,
> 
> pytables FTBFS on a clean amd64 sid chroot. 4 tests fail with similar
> error messages:
> ==
> ERROR: None (tables.tests.test_tables.RecArrayRangeTestCase)
> - --
> Traceback (most recent call last):
>   File 
> "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/tests/test_tables.py",
>  line 2169, in test01a_range
> self.check_range()
>   File 
> "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/tests/test_tables.py",
>  line 2042, in check_range
> recarray = table.read(self.start, self.stop, self.step)
>   File 
> "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/table.py", line 
> 1965, in read
> arr = self._read(start, stop, step, field, out)
>   File 
> "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-2.7/tables/table.py", line 
> 1887, in _read
> self.row._fill_col(result, start, stop, step, field)
>   File "tables/tableextension.pyx", line 1272, in 
> tables.tableextension.Row._fill_col (tables/tableextension.c:15021)
> ValueError: could not broadcast input array from shape (2) into shape (0)

This is upstream issue #481 [1] which was fixed by commit 44dba04 [2].

[1] 
[2] 


I've successfully tested this patch, but then a python3.5 related error occurs:

Ran 5734 tests in 147.360s

OK (skipped=42)
+ cd /tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-3.5
+ env PYTHONPATH=. LOCPATH=/tmp/buildd/pytables-3.2.1/tmp-locales 
LC_ALL=en_US.UTF-8 python3.5 tables/tests/test_all.py -vvv
Traceback (most recent call last):
  File "tables/tests/test_all.py", line 10, in 
import tables
  File 
"/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-3.5/tables/__init__.py", 
line 123, in 
from tables.file import File, open_file, copy_file, openFile, copyFile
  File "/tmp/buildd/pytables-3.2.1/build/lib.linux-x86_64-3.5/tables/file.py", 
line 31, in 
import numexpr
  File "/usr/lib/python3/dist-packages/numexpr/__init__.py", line 40, in 

from numexpr.expressions import E
  File "/usr/lib/python3/dist-packages/numexpr/expressions.py", line 45, in 

from numexpr import interpreter
ImportError: cannot import name 'interpreter'
debian/rules:58: recipe for target 'override_dh_install' failed
make[1]: *** [override_dh_install] Error 1
make[1]: Leaving directory '/tmp/buildd/pytables-3.2.1'
debian/rules:26: recipe for target 'binary' failed
make: *** [binary] Error 2

Thanks,

_g.



signature.asc
Description: OpenPGP digital signature
-- 
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers