Bug#866166: sagemath: FTBFS with Sphinx 1.5: AttributeError: 'BuildEnvironment' object has no attribute 'citations'

[Ximin Luo]

Tobias Hansen wrote:
> On 06/28/2017 04:03 PM, Dmitry Shachnev wrote:
> > Hi Tobias, and thanks for the quick response!
> >
> > On Wed, Jun 28, 2017 at 02:44:23PM +0100, Tobias Hansen wrote:
> >> Hi Dmitry,
> >>
> >> would it be an option to upload sphinx 1.5 to unstable together with
> >> sagemath 8.0 (which works fine with sphinx 1.5) or do you want to do it
> >> before? We plan to upload sagemath 8.0 to unstable when it's released
> >> (they are at beta12 now).
> > That depends on how long do you estimate the final release to take.
> >
> > From what I found [1] the sage-8.0 milestone still has 341 active issues,
> > which does not sound very optimistic.
> >
> > I can wait for 2 or 3 weeks, but I do not want to wait longer. After all
> > upstream already released Sphinx 1.6 so we are two major releases behind.
> >
> >> Otherwise it's a matter of backporting commits from sagemath 8.0 to 7.6.
> > I think this is not enough, unless the second part of my bugreport is also
> > addressed upstream.
> >
> > [1]: https://trac.sagemath.org/milestone/sage-8.0
> >
> > --
> > Dmitry Shachnev
> 
> 
> Ok, we should fix this then. The sage 8.0 package build actually stops
> before dh_sphinxdoc currently (at override_dh_auto_install), so I don't
> know yet if we have the same problem there.
> 

I fixed our other issue in git and now I'm seeing these sphinxdoc errors:

[..]
make[1]: Entering directory '/home/infinity0/var/lib/sage/sagemath'
dh_sphinxdoc -XMathJax.js -Xtranslations.js -Xsearchtools.js
dh_sphinxdoc: ignoring unknown JavaScript code: 
debian/sagemath-doc-ca/usr/share/doc/sagemath/html/ca/intro/_static/thebe-sage.js
[..]
dh_sphinxdoc: 
debian/sagemath-doc-en/usr/share/doc/sagemath/html/en/reference/_sources/lie_algebras.rst.txt
 is missing
debian/rules:199: recipe for target 'override_dh_sphinxdoc' failed
make[1]: *** [override_dh_sphinxdoc] Error 2

Dmitry, if we need to further patch Sphinx or Sage, I'd be happy to do that. 
But what exactly is needed? I'm not sure if I totally understood the ticket you 
linked:

https://github.com/sphinx-doc/sphinx/pull/2454

Do we just need to put the equivalent of this:

https://github.com/mitya57/matplotlib/commit/53e6bc46d2f010f9a80e0c73dceb6166705f608f

into Sage's layout templates?

X

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Processing of caffe-contrib_1.0.0-3_amd64.changes

[Debian FTP Masters]

caffe-contrib_1.0.0-3_amd64.changes uploaded successfully to localhost
along with the files:
  caffe-contrib_1.0.0-3.dsc
  caffe-contrib_1.0.0-3.debian.tar.xz
  caffe-contrib_1.0.0-3_amd64.buildinfo
  caffe-cuda_1.0.0-3_amd64.deb
  caffe-tools-cuda_1.0.0-3_amd64.deb
  libcaffe-cuda-dev_1.0.0-3_amd64.deb
  libcaffe-cuda1_1.0.0-3_amd64.deb
  python3-caffe-cuda_1.0.0-3_amd64.deb

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Bug#867097: opencv: Build-dependency latex-xcolor no longer available

[Mattia Rizzolo]

Control: forcemerge 865247 -1

On Mon, Jul 03, 2017 at 11:05:06PM +0300, Adrian Bunk wrote:
> The texlive-latex-recommended package no longer provides
> latex-xcolor in the package dependencies, please update
> the build-dependency to texlive-latex-recommended.

this was already filed (and fixed in experimental).

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Processed: Re: Bug#867097: opencv: Build-dependency latex-xcolor no longer available

[Debian Bug Tracking System]

Processing control commands:

> forcemerge 865247 -1
Bug #865247 {Done: Mattia Rizzolo } [src:opencv] Please 
update dependencies from latex-xcolor to tl-latex-recommended
Bug #867097 [src:opencv] opencv: Build-dependency latex-xcolor no longer 
available
Marked Bug as done
Marked as fixed in versions opencv/3.0.0+dfsg-1~exp5.
Merged 865247 867097

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Bug#866166: sagemath: FTBFS with Sphinx 1.5: AttributeError: 'BuildEnvironment' object has no attribute 'citations'

[Ximin Luo]

Dmitry Shachnev:
> Hi Ximin!
> 
> On Tue, Jul 04, 2017 at 07:35:00AM +, Ximin Luo wrote:
>> I fixed our other issue in git and now I'm seeing these sphinxdoc errors:
>>
>> [..]
>> make[1]: Entering directory '/home/infinity0/var/lib/sage/sagemath'
>> dh_sphinxdoc -XMathJax.js -Xtranslations.js -Xsearchtools.js
>> dh_sphinxdoc: ignoring unknown JavaScript code: 
>> debian/sagemath-doc-ca/usr/share/doc/sagemath/html/ca/intro/_static/thebe-sage.js
>> [..]
>> dh_sphinxdoc: 
>> debian/sagemath-doc-en/usr/share/doc/sagemath/html/en/reference/_sources/lie_algebras.rst.txt
>>  is missing
>> debian/rules:199: recipe for target 'override_dh_sphinxdoc' failed
>> make[1]: *** [override_dh_sphinxdoc] Error 2
>>
>> Dmitry, if we need to further patch Sphinx or Sage, I'd be happy to do that.
>> But what exactly is needed? I'm not sure if I totally understood the ticket
>> you linked:
>>
>> https://github.com/sphinx-doc/sphinx/pull/2454
>>
>> Do we just need to put the equivalent of this:
>>
>> https://github.com/mitya57/matplotlib/commit/53e6bc46d2f010f9a80e0c73dceb6166705f608f
>>
>> into Sage's layout templates?
> 
> No, the problem is not in the templates, the problem is with installation
> layout.
> 
> dh_sphinxdoc (and searchtools.js) expect to to find the source files with the
> following scheme: .../_sources/ + original filename (i.e. lie_algebras.rst) +
> sourcelink_suffix if it is different from the original extension (i.e. .txt).
> 
> Here it fails to find these files. Most probably they are installed without
> the sourcelink_suffix, i.e. .../_sources/lie_algebras.rst instead of
> .../_sources/lie_algebras.rst.txt.
> 

It looks like the .txt suffixes are there, but the problem rather is that we 
have multiple files with the same name installed into different nested 
directories:

$ find debian/tmp/usr/share/doc/ -name lie_algebras.rst*
debian/tmp/usr/share/doc/sagemath/html/en/reference/algebras/_sources/lie_algebras.rst.txt
debian/tmp/usr/share/doc/sagemath/html/en/reference/categories/_sources/sage/categories/lie_algebras.rst.txt
debian/tmp/usr/share/doc/sagemath/html/en/reference/categories/_sources/sage/categories/examples/lie_algebras.rst.txt

The file contents are all different:

$ cat 
debian/tmp/usr/share/doc/sagemath/html/en/reference/algebras/_sources/lie_algebras.rst.txt
 
Lie Algebras


.. toctree::
   :maxdepth: 2

   sage/algebras/lie_algebras/abelian
   sage/algebras/lie_algebras/affine_lie_algebra
   sage/algebras/lie_algebras/classical_lie_algebra
   sage/algebras/lie_algebras/examples
   sage/algebras/lie_algebras/heisenberg
   sage/algebras/lie_algebras/lie_algebra
   sage/algebras/lie_algebras/lie_algebra_element
   sage/algebras/lie_algebras/poincare_birkhoff_witt
   sage/algebras/lie_algebras/structure_coefficients
   sage/algebras/lie_algebras/virasoro

$ cat 
debian/tmp/usr/share/doc/sagemath/html/en/reference/categories/_sources/sage/categories/lie_algebras.rst.txt
.. nodoctest

.. _sage.categories.lie_algebras:

Lie Algebras


.. This file has been autogenerated.


.. automodule:: sage.categories.lie_algebras
   :members:
   :undoc-members:
   :show-inheritance:
   

$ cat 
debian/tmp/usr/share/doc/sagemath/html/en/reference/categories/_sources/sage/categories/examples/lie_algebras.rst.txt
.. nodoctest

.. _sage.categories.examples.lie_algebras:

Examples of a Lie algebra
=

.. This file has been autogenerated.


.. automodule:: sage.categories.examples.lie_algebras
   :members:
   :undoc-members:
   :show-inheritance:

> It looks like it installs using custom code in docbuild/ext/multidocs.py, not
> by enabling the standard Sphinx’ html_copy_source configuration option.
> 
> Unfortunately I cannot test sagemath build locally because it exceeds my RAM,
> but I can suggest two ways to potentially fix it:
> 
> * Add sourcelink_suffix support to multidocs.py (the “# Setup source symbolic
>   links” block). It can be obtained from app.config.html_sourcelink_suffix.
> 
> * Or set html_sourcelink_suffix to '.rst' in conf.py. This way it should be
>   the same as original extensions, so dh_sphinxdoc will not try to append it.
> 

So I guess your second option won't work but perhaps the first option might 
work, we just need to fiddle with the paths?

Could you also explain why exactly dh_sphinxdoc checks for these - what 
functionality is broken because these paths don't exist? I don't see that 
anyone noticed anything on the Sage upstream ticket 
https://trac.sagemath.org/ticket/22252 which is already merged, but then again 
I know that not everybody reads the documentation and checks it for flaws...

OTOH Sage uses a very custom sphinx build so it's possible that dh_sphinxdoc 
itself is not doing the right thing for Sage's docs - I remember filing a patch 
for dh_sphinxdoc for another thing that it was searching for, which for Sage 
was at a different location than usual. (see #841141)

X

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Bug#852166: Contains a large number of auto-generated stub manpages

[Sébastien Villemot]

Dear Michael,

Le dimanche 22 janvier 2017 à 09:56 +0100, Michael Stapelberg a écrit :
> Package: liblapack-doc-man
> Version: 3.7.0-1
> Severity: normal
> 
> liblapack-doc-man installs 10770 files into /usr/share/man/man3, all of which 
> seem to be generated by Doxygen if I understand correctly.
> 
> Of these 10770 files, 5902 are symlinks and 4868 are regular files.
> Of the 4868 regular files:
> • 2057 files consist of 19 lines (documenting a function)
> • 2550 files consist of 25 lines (documenting a file)
> 
> Notably, these files do not contain anything but the function prototype.
> 
> 261 files with actual content worth looking at remain.
> 
> The large number of files without substantial content is unfortunate for a 
> few 
> different reasons:
> 
> • On manpages.debian.org, liblapack-doc-man consumes 1GB of disk space per 
>   Debian version. The next biggest consumer is linux-manual-4.8 with 51 MB.
> 
> • liblapack-doc-man consumes about 1 inodes on user’s root file systems 
> for 
>   no good reason. Even when plenty of inodes are available, remember that 
> many 
>   backup programs do not scale well when presented with a large number of 
> tiny 
>   files.
>   
> • I haven’t verified it, but I assume that the man database and similar tools 
>   will degrade in performance when presented with such a large corpus of 
>   manpages.
>   
> Could you change the package so that it only contains the 261 files with 
> actual
> content please? Thank you!

I am about to upload a new version that drastically reduces the number
of manpage files to about 2250: this includes the ~250 files that you
mentioned, plus about 2000 symlinks. Note that those symlinks serve a
purpose: they correspond to the functions in the API of lapack, so that
one can do "man funcname" on all of them (several functions are
documented by the same manpage, hence the need for symlinks).

I think this is a reasonable compromise, and I hope this is ok with you
(but feel free to tell me if this is not).

Cheers,

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Bug#852166: Contains a large number of auto-generated stub manpages

[Michael Stapelberg]

Thanks for the heads-up. A reduction to 2250 is a great improvement indeed!
Once this is uploaded and processed, I can update the bug (mostly for
completeness) with new disk usage numbers from manpages.d.o.

On Tue, Jul 4, 2017 at 5:12 AM, Sébastien Villemot 
wrote:

> Dear Michael,
>
> Le dimanche 22 janvier 2017 à 09:56 +0100, Michael Stapelberg a écrit :
> > Package: liblapack-doc-man
> > Version: 3.7.0-1
> > Severity: normal
> >
> > liblapack-doc-man installs 10770 files into /usr/share/man/man3, all of
> which
> > seem to be generated by Doxygen if I understand correctly.
> >
> > Of these 10770 files, 5902 are symlinks and 4868 are regular files.
> > Of the 4868 regular files:
> > • 2057 files consist of 19 lines (documenting a function)
> > • 2550 files consist of 25 lines (documenting a file)
> >
> > Notably, these files do not contain anything but the function prototype.
> >
> > 261 files with actual content worth looking at remain.
> >
> > The large number of files without substantial content is unfortunate for
> a few
> > different reasons:
> >
> > • On manpages.debian.org, liblapack-doc-man consumes 1GB of disk space
> per
> >   Debian version. The next biggest consumer is linux-manual-4.8 with 51
> MB.
> >
> > • liblapack-doc-man consumes about 1 inodes on user’s root file
> systems for
> >   no good reason. Even when plenty of inodes are available, remember
> that many
> >   backup programs do not scale well when presented with a large number
> of tiny
> >   files.
> >
> > • I haven’t verified it, but I assume that the man database and similar
> tools
> >   will degrade in performance when presented with such a large corpus of
> >   manpages.
> >
> > Could you change the package so that it only contains the 261 files with
> actual
> > content please? Thank you!
>
> I am about to upload a new version that drastically reduces the number
> of manpage files to about 2250: this includes the ~250 files that you
> mentioned, plus about 2000 symlinks. Note that those symlinks serve a
> purpose: they correspond to the functions in the API of lapack, so that
> one can do "man funcname" on all of them (several functions are
> documented by the same manpage, hence the need for symlinks).
>
> I think this is a reasonable compromise, and I hope this is ok with you
> (but feel free to tell me if this is not).
>
> Cheers,
>
> --
>  .''`.Sébastien Villemot
> : :' :Debian Developer
> `. `' http://sebastien.villemot.name
>   `-  GPG Key: 4096R/381A7594
>



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caffe-contrib_1.0.0-3_amd64.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Hash: SHA256

Format: 1.8
Date: Tue, 04 Jul 2017 09:47:52 +
Source: caffe-contrib
Binary: caffe-cuda caffe-tools-cuda libcaffe-cuda1 libcaffe-cuda-dev 
python3-caffe-cuda
Architecture: source amd64
Version: 1.0.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Zhou Mo 
Description:
 caffe-cuda - Fast, open framework for Deep Learning (Meta)
 caffe-tools-cuda - Tools for fast, open framework for Deep Learning (CUDA)
 libcaffe-cuda-dev - development files for Caffe (CUDA)
 libcaffe-cuda1 - library of Caffe, deep leanring framework (CUDA)
 python3-caffe-cuda - Python3 interface of Caffe (CUDA)
Changes:
 caffe-contrib (1.0.0-3) unstable; urgency=medium
 .
   * Upload to unstable.
   * Set multi-arch of the dev package to same.
   * Bump Standards Version to 4.0.0 (needs no change).
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Thank you for your contribution to Debian.

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Bug#867172: giac FTBFS on big endian: tests fail and hang

[Adrian Bunk]

Source: giac
Version: 1.2.3.53+dfsg1-2
Severity: important

https://buildd.debian.org/status/package.php?p=giac

...
   debian/rules override_dh_auto_test-arch
make[1]: Entering directory '/<>/giac-1.2.3.53+dfsg1'
if dh_auto_test -a -D check; then :; else cat check/test-suite.log; false; fi
make -j2 check
make[2]: Entering directory '/<>/giac-1.2.3.53+dfsg1/check'
make  check-TESTS
make[3]: Entering directory '/<>/giac-1.2.3.53+dfsg1/check'
make[4]: Entering directory '/<>/giac-1.2.3.53+dfsg1/check'
FAIL: chk_integrate
FAIL: chk_normalize
FAIL: chk_partfrac
FAIL: chk_factor
FAIL: chk_limit
FAIL: chk_geo
FAIL: chk_cas
FAIL: chk_xavier
FAIL: chk_morley_demo
FAIL: chk_fhan1
FAIL: chk_fhan2
FAIL: chk_fhan3
FAIL: chk_fhan5
FAIL: chk_fhan4
FAIL: chk_fhan8
FAIL: chk_fhan0
FAIL: chk_fhan11
FAIL: chk_fhan12
FAIL: chk_fhan13
FAIL: chk_fhan14
FAIL: chk_fhan15
FAIL: chk_fhan16
FAIL: chk_fhan6
FAIL: chk_fhan19
FAIL: chk_fhan20
FAIL: chk_fhan21
FAIL: chk_fhan9
FAIL: chk_fhan18
FAIL: chk_fhan7
E: Build killed with signal TERM after 360 minutes of inactivity

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Processing of lapack_3.7.1-1_source.changes

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lapack_3.7.1-1_source.changes uploaded successfully to localhost
along with the files:
  lapack_3.7.1-1.dsc
  lapack_3.7.1.orig.tar.gz
  lapack_3.7.1-1.debian.tar.xz
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Bug#852166: marked as done (Contains a large number of auto-generated stub manpages)

[Debian Bug Tracking System]

Your message dated Tue, 04 Jul 2017 14:51:39 +
with message-id 
and subject line Bug#852166: fixed in lapack 3.7.1-1
has caused the Debian Bug report #852166,
regarding Contains a large number of auto-generated stub manpages
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
852166: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=852166
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: liblapack-doc-man
Version: 3.7.0-1
Severity: normal

liblapack-doc-man installs 10770 files into /usr/share/man/man3, all of which 
seem to be generated by Doxygen if I understand correctly.

Of these 10770 files, 5902 are symlinks and 4868 are regular files.
Of the 4868 regular files:
• 2057 files consist of 19 lines (documenting a function)
• 2550 files consist of 25 lines (documenting a file)

Notably, these files do not contain anything but the function prototype.

261 files with actual content worth looking at remain.

The large number of files without substantial content is unfortunate for a few 
different reasons:

• On manpages.debian.org, liblapack-doc-man consumes 1GB of disk space per 
  Debian version. The next biggest consumer is linux-manual-4.8 with 51 MB.

• liblapack-doc-man consumes about 1 inodes on user’s root file systems for 
  no good reason. Even when plenty of inodes are available, remember that many 
  backup programs do not scale well when presented with a large number of tiny 
  files.
  
• I haven’t verified it, but I assume that the man database and similar tools 
  will degrade in performance when presented with such a large corpus of 
  manpages.
  
Could you change the package so that it only contains the 261 files with actual
content please? Thank you!


-- System Information:
Debian Release: 9.0
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'unstable-debug'), (500, 
'testing-debug'), (500, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386, armel, mipsel

Kernel: Linux 4.8.0-2-amd64 (SMP w/8 CPU cores)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
--- End Message ---
--- Begin Message ---
Source: lapack
Source-Version: 3.7.1-1

We believe that the bug you reported is fixed in the latest version of
lapack, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 852...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sébastien Villemot  (supplier of updated lapack package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 04 Jul 2017 15:48:07 +0200
Source: lapack
Binary: liblapack3 liblapacke liblapacke-dev libtmglib3 libtmglib-dev 
liblapack-dev liblapack-pic liblapack-test liblapack-doc libblas3 
libblas-common libblas-dev libblas-test liblapack-doc-man
Architecture: source
Version: 3.7.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sébastien Villemot 
Description:
 libblas-common - Dependency package for all BLAS implementations
 libblas-dev - Basic Linear Algebra Subroutines 3, static library
 libblas-test - Basic Linear Algebra Subroutines 3, testing programs
 libblas3   - Basic Linear Algebra Reference implementations, shared library
 liblapack-dev - Library of linear algebra routines 3 - static version
 liblapack-doc - Library of linear algebra routines 3 - documentation
 liblapack-doc-man - Transitional package for BLAS and LAPACK manpages
 liblapack-pic - Library of linear algebra routines 3 - static PIC version
 liblapack-test - Library of linear algebra routines 3 - testing programs
 liblapack3 - Library of linear algebra routines 3 - shared version
 liblapacke - Library of linear algebra routines 3 - C lib shared version
 liblapacke-dev - Library of linear algebra routines 3 - Headers
 libtmglib-dev - test matrix generators of LAPACK - development files
 libtmglib3 - test matrix generators of LAPACK - shared version
Closes: 852166
Changes:
 lapack (3.7.1-1) unstable; 

Processing of glpk-java_1.9.0-1_source.changes

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  glpk-java_1.9.0-1.dsc
  glpk-java_1.9.0.orig.tar.gz
  glpk-java_1.9.0-1.debian.tar.xz
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lapack_3.7.1-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 04 Jul 2017 15:48:07 +0200
Source: lapack
Binary: liblapack3 liblapacke liblapacke-dev libtmglib3 libtmglib-dev 
liblapack-dev liblapack-pic liblapack-test liblapack-doc libblas3 
libblas-common libblas-dev libblas-test liblapack-doc-man
Architecture: source
Version: 3.7.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sébastien Villemot 
Description:
 libblas-common - Dependency package for all BLAS implementations
 libblas-dev - Basic Linear Algebra Subroutines 3, static library
 libblas-test - Basic Linear Algebra Subroutines 3, testing programs
 libblas3   - Basic Linear Algebra Reference implementations, shared library
 liblapack-dev - Library of linear algebra routines 3 - static version
 liblapack-doc - Library of linear algebra routines 3 - documentation
 liblapack-doc-man - Transitional package for BLAS and LAPACK manpages
 liblapack-pic - Library of linear algebra routines 3 - static PIC version
 liblapack-test - Library of linear algebra routines 3 - testing programs
 liblapack3 - Library of linear algebra routines 3 - shared version
 liblapacke - Library of linear algebra routines 3 - C lib shared version
 liblapacke-dev - Library of linear algebra routines 3 - Headers
 libtmglib-dev - test matrix generators of LAPACK - development files
 libtmglib3 - test matrix generators of LAPACK - shared version
Closes: 852166
Changes:
 lapack (3.7.1-1) unstable; urgency=medium
 .
   * New upstream version 3.7.1
   * d/copyright:
 + Reflect upstream changes.
 + Use secure URL for format.
   * d/p/test-numbering.patch: drop patch, applied upstream.
   * d/p/fix-typos.patch: former patch applied upstream, but new typos detected
 by lintian, so update the patch.
   * Drop stub files in manpages and HTML documentation.
 - d/p/doxygen-downsize.patch: new patch, disable EXTRACT_ALL in Doxygen.
 - d/p/doxygen-strips-source.patch: drop patch, merge with the former.
 (Closes: #852166)
   * Drop transitional package libblas-doc.
   * Merge liblapack-doc-man into liblapack-doc.
 Now that both packages are smaller, it makes sense to merge them.
 liblapack-doc-man is now a transitional package.
   * Ship README.md in liblapack-doc.
   * d/watch: bump to format version 4.
   * d/rules: add support for "nodoc" tag of DEB_BUILD_OPTIONS.
   * d/control:
 + Use canonical URL for Vcs-Browser.
 + Remove unnecessary versioned build-dep on dpkg-dev.
 + Use the new Build-Depends-Arch field.
 + Bump to Standards-Version 4.0.0.
 + Drop obsolete Breaks against liblapack3gf.
 + Mark liblapack-doc{,-man} as M-A foreign.
Checksums-Sha1:
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 2b31f1ef29d6a1758413aad7add7a23f2ef15102 19888 lapack_3.7.1-1.debian.tar.xz
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lapack_3.7.1-1.debian.tar.xz
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lapack_3.7.1-1_amd64.buildinfo
Files:
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 dcdeeed73de152c4643ccc5b1aeb453c 9137261 libs optional lapack_3.7.1.orig.tar.gz
 b72d133a6ac3edd2c31e4eed7b6a59df 19888 libs optional 
lapack_3.7.1-1.debian.tar.xz
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lapack_3.7.1-1_amd64.buildinfo

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glpk-java_1.9.0-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 04 Jul 2017 16:34:40 +0200
Source: glpk-java
Binary: libglpk-java
Architecture: source
Version: 1.9.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sébastien Villemot 
Description:
 libglpk-java - Java binding to the GNU Linear Programming Kit
Changes:
 glpk-java (1.9.0-1) unstable; urgency=medium
 .
   * New upstream version 1.9.0
   * d/control:
 + Bump Standards-Version to 4.0.0.
 + Tighten B-D on default-jdk to require at least 1.8.
 + Mark libglpk-java as M-A same.
Checksums-Sha1:
 394473dbd1604c0264caf0808e69a46101a13342 2032 glpk-java_1.9.0-1.dsc
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 039815fd6591d4e680e02192ebad4b1e0cdb8348 11069 
glpk-java_1.9.0-1_amd64.buildinfo
Checksums-Sha256:
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glpk-java_1.9.0.orig.tar.gz
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 02d64940e9114df6a9e0b77494a4f51d4fdb7d9f10638363a61406a6a4090c07 11069 
glpk-java_1.9.0-1_amd64.buildinfo
Files:
 749bed6e65d69a11200453127de3387b 2032 java optional glpk-java_1.9.0-1.dsc
 f389c417a16bdea6382ae87e2e3cf96d 1149434 java optional 
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 63c79cfcb2eb64170c6188a98166d3f4 3624 java optional 
glpk-java_1.9.0-1.debian.tar.xz
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Bug#852166: Contains a large number of auto-generated stub manpages

[Sébastien Villemot]

Le mardi 04 juillet 2017 à 06:05 -0700, Michael Stapelberg a écrit :
> Thanks for the heads-up. A reduction to 2250 is a great improvement indeed!
> Once this is uploaded and processed, I can update the bug (mostly for
> completeness) with new disk usage numbers from manpages.d.o.

Ok, great. Note that the manpages are going to move into liblapack-doc
(formerly they were in liblapack-doc-man, I am merging the two packages
now that both of them are going to be smaller).

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Bug#866166: sagemath: FTBFS with Sphinx 1.5: AttributeError: 'BuildEnvironment' object has no attribute 'citations'

[Dmitry Shachnev]

Hi Ximin!

On Tue, Jul 04, 2017 at 07:35:00AM +, Ximin Luo wrote:
> I fixed our other issue in git and now I'm seeing these sphinxdoc errors:
>
> [..]
> make[1]: Entering directory '/home/infinity0/var/lib/sage/sagemath'
> dh_sphinxdoc -XMathJax.js -Xtranslations.js -Xsearchtools.js
> dh_sphinxdoc: ignoring unknown JavaScript code: 
> debian/sagemath-doc-ca/usr/share/doc/sagemath/html/ca/intro/_static/thebe-sage.js
> [..]
> dh_sphinxdoc: 
> debian/sagemath-doc-en/usr/share/doc/sagemath/html/en/reference/_sources/lie_algebras.rst.txt
>  is missing
> debian/rules:199: recipe for target 'override_dh_sphinxdoc' failed
> make[1]: *** [override_dh_sphinxdoc] Error 2
>
> Dmitry, if we need to further patch Sphinx or Sage, I'd be happy to do that.
> But what exactly is needed? I'm not sure if I totally understood the ticket
> you linked:
>
> https://github.com/sphinx-doc/sphinx/pull/2454
>
> Do we just need to put the equivalent of this:
>
> https://github.com/mitya57/matplotlib/commit/53e6bc46d2f010f9a80e0c73dceb6166705f608f
>
> into Sage's layout templates?

No, the problem is not in the templates, the problem is with installation
layout.

dh_sphinxdoc (and searchtools.js) expect to to find the source files with the
following scheme: .../_sources/ + original filename (i.e. lie_algebras.rst) +
sourcelink_suffix if it is different from the original extension (i.e. .txt).

Here it fails to find these files. Most probably they are installed without
the sourcelink_suffix, i.e. .../_sources/lie_algebras.rst instead of
.../_sources/lie_algebras.rst.txt.

It looks like it installs using custom code in docbuild/ext/multidocs.py, not
by enabling the standard Sphinx’ html_copy_source configuration option.

Unfortunately I cannot test sagemath build locally because it exceeds my RAM,
but I can suggest two ways to potentially fix it:

* Add sourcelink_suffix support to multidocs.py (the “# Setup source symbolic
  links” block). It can be obtained from app.config.html_sourcelink_suffix.

* Or set html_sourcelink_suffix to '.rst' in conf.py. This way it should be
  the same as original extensions, so dh_sphinxdoc will not try to append it.

--
Dmitry Shachnev


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solvespace is marked for autoremoval from testing

[Debian testing autoremoval watch]

solvespace 2.3+repack1-2 is marked for autoremoval from testing on 2017-07-26

It is affected by these RC bugs:
866077: solvespace: solvespace FTBFS: recipe for target 
'src/generated/bitmapfont.table.h' failed


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ros-catkin-pkg 0.3.5-2 MIGRATED to testing

[Debian testing watch]

FYI: The status of the ros-catkin-pkg source package
in Debian's testing distribution has changed.

  Previous version: 0.2.10-5
  Current version:  0.3.5-2

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ffc 2016.2.0-4 MIGRATED to testing

[Debian testing watch]

FYI: The status of the ffc source package
in Debian's testing distribution has changed.

  Previous version: 2016.2.0-3
  Current version:  2016.2.0-4

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xmds2 2.2.3+dfsg-2 MIGRATED to testing

[Debian testing watch]

FYI: The status of the xmds2 source package
in Debian's testing distribution has changed.

  Previous version: 2.2.3+dfsg-1
  Current version:  2.2.3+dfsg-2

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Processing of bibutils_6.0-1_amd64.changes

[Debian FTP Masters]

bibutils_6.0-1_amd64.changes uploaded successfully to localhost
along with the files:
  bibutils_6.0-1.dsc
  bibutils_6.0.orig.tar.gz
  bibutils_6.0-1.debian.tar.xz
  bibutils-dbgsym_6.0-1_amd64.deb
  bibutils_6.0-1_amd64.buildinfo
  bibutils_6.0-1_amd64.deb
  libbibutils-dev_6.0-1_amd64.deb
  libbibutils6-dbgsym_6.0-1_amd64.deb
  libbibutils6_6.0-1_amd64.deb

Greetings,

Your Debian queue daemon (running on host usper.debian.org)

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bibutils_6.0-1_amd64.changes is NEW

[Debian FTP Masters]

binary:libbibutils6 is NEW.
binary:libbibutils6 is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html
 or https://ftp-master.debian.org/backports-new.html for *-backports

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