Bug#801253: O: wicd -- wired and wireless network manager

[Mattia Rizzolo]

On Mon, Feb 01, 2016 at 09:11:12PM +0100, Axel Beckert wrote:
> There though may be other reasons why a package is held back from
> migrating to testing, e.g. if a package it depends on or build-depends
> on, hasn't migrated to testing yet.

Just to be picky, build-dependencies are not considered for testing
migration (which is something I'd like to help change one day)

-- 
regards,
Mattia Rizzolo

GPG Key: 66AE 2B4A FCCF 3F52 DA18  4D18 4B04 3FCD B944 4540  .''`.
more about me:  http://mapreri.org  : :'  :
Launchpad user: https://launchpad.net/~mapreri  `. `'`
Debian QA page: https://qa.debian.org/developer.php?login=mattia  `-


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Bug#801253: O: wicd -- wired and wireless network manager

[toogley]

Hey,

what exactly needs to be changed in the package to be uploaded in 
unstable? Or what is the reason for waiting some time before changing 
from "UNRELEASED" to "unstable" inside the debian changelog file?




On 01/26/2016 02:24 PM, Axel Beckert wrote:

Hi,

toogley wrote:

does it bother, when i work at the package within a delay of a week at most?


If it doesn't bother that I work on the package, too.

At least I want to fix the things I broke with the initial 1.7.3
upload. :-)


@Axel:

May i import + upload the next version of wicd (which is 1.7.5, i think)?


Fine for me. I do expect another upstream release anyway, since I told
upstream which of the Debian patches he could import. :-)

Maybe you should subscribe to the two wicd upstream mailing lists (if
you haven't already):

http://sourceforge.net/p/wicd/mailman/?source=navbar


https://tests.reproducible-builds.org/rb-pkg/unstable/amd64/wicd.html
says, the package building has failed,


Oh! Didn't notice so far.

Ah, it only failed in one of two builds, in the one with a non-English
locale. So there may be locale-dependent things in the build system.


because of "dpkg-source: warning: failed to verify signature on 
./wicd_1.7.3-3.dsc"


I don't see that line in the log at
https://tests.reproducible-builds.org/logs/unstable/amd64/wicd_1.7.3-3.build2.log.gz
(which is the log of the failed build)

That line is from
https://tests.reproducible-builds.org/rbuild/unstable/amd64/wicd_1.7.3-3.rbuild.log
which didn't fail.

So that's not the reason. This issue is the reason for failed build:

[...]
dh_install
dh_install: wicd-daemon missing files: usr/share/locale/
dh_install: missing files, aborting
debian/rules:8 : la recette pour la cible « binary » a échouée
make: *** [binary] Erreur 255
dpkg-buildpackage: erreur: fakeroot debian/rules binary a produit une erreur de 
sortie de type 2

Regards, Axel

Bug#801253: O: wicd -- wired and wireless network manager

[Axel Beckert]

Hi,

toogley wrote:
> what exactly needs to be changed in the package to be uploaded in
> unstable?

In general or in case of wicd as of now? In general there can be many
reasons. A common one is though the one which currently applies to wicd:

I want to wait with the next upload until the current package in
unstable as propagated to testing.

https://packages.qa.debian.org/w/wicd.html currently says:

* Too young, only 8 of 10 days old
* Not considered

urgency=low= 10 days (old default value)
urgency=medium =  5 days (currently recommended as default value)
urgency=high   =  2 days

I've chosen urgency=low on purpose for wicd because I think 1.7.3
should get more exposion to users in unstable than most other uploads.
And the uploads 1.7.3-1 and 1.7.3-2 have shown that this probably was
a good idea. ;-)

There though may be other reasons why a package is held back from
migrating to testing, e.g. if a package it depends on or build-depends
on, hasn't migrated to testing yet. But those usually would be shown
on https://packages.qa.debian.org/w/wicd.html as well as
https://tracker.debian.org/pkg/wicd and the source they're refering to
(https://qa.debian.org/excuses.php?package=wicd).

> Or what is the reason for waiting some time before changing from
> "UNRELEASED" to "unstable" inside the debian changelog file?

Putting "UNRELEASED" in there is solely a convention, but some tools
recognize it as "stuff currently in VCS is not yet meant/ready for
uploading", e.g.
https://udd.debian.org/dmd.cgi?email1=abe%40debian.org#todo shows "New
version: ready for upload" if there's "unstable" in there, but the
package not yet uploaded.

Regards, Axel
-- 
 ,''`.  |  Axel Beckert , http://people.debian.org/~abe/
: :' :  |  Debian Developer, ftp.ch.debian.org Admin
`. `'   |  4096R: 2517 B724 C5F6 CA99 5329  6E61 2FF9 CD59 6126 16B5
  `-|  1024D: F067 EA27 26B9 C3FC 1486  202E C09E 1D89 9593 0EDE

Bug#801253: O: wicd -- wired and wireless network manager

[toogley]

On 02/01/2016 09:11 PM, Axel Beckert wrote:
> In general or in case of wicd as of now?


i'm interested in both, so thanks for answering it :)


On 02/01/2016 09:11 PM, Axel Beckert wrote:
> And the uploads 1.7.3-1 and 1.7.3-2 have shown that this probably was
> a good idea. ;-)

Do you mean because of the big amount of fixed bugs?

Bug#801253: O: wicd -- wired and wireless network manager

[Axel Beckert]

Hi,

toogley wrote:
> On 02/01/2016 09:11 PM, Axel Beckert wrote:
> > And the uploads 1.7.3-1 and 1.7.3-2 have shown that this probably was
> > a good idea. ;-)
> 
> Do you mean because of the big amount of fixed bugs?

Because quite some severe bugs were found in the first two uploads.

There were quite a lot of changes upstream between 1.7.2.4 and 1.7.3,
so the chances for regressions, etc. were rather high -- and indeed
some were found.

Regards, Axel
-- 
 ,''`.  |  Axel Beckert , http://people.debian.org/~abe/
: :' :  |  Debian Developer, ftp.ch.debian.org Admin
`. `'   |  4096R: 2517 B724 C5F6 CA99 5329  6E61 2FF9 CD59 6126 16B5
  `-|  1024D: F067 EA27 26B9 C3FC 1486  202E C09E 1D89 9593 0EDE

Bug#813253: marked as done (ITA: wmtv)

[Debian Bug Tracking System]

Your message dated Mon, 01 Feb 2016 23:26:51 +
with message-id 
and subject line Bug#813253: fixed in wmtv 0.6.6-1
has caused the Debian Bug report #813253,
regarding ITA: wmtv
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: normal

Hi,

I’m hereby orphaning the wmtv package.
I haven’t given this package any care for years, my last upload was in 
2005. I also don’t use WindowMaker anymore, and I don’t use anymore any 
bt848- or bt878-based video capture card (and I can’t anyway since 
analog TV broadcast hast stopped in France).
The package has also been dead upstream for as long as I have known it.

Given its low popcon-score, this package might be a good candidate for 
removal.

-- 
Nicolas


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--- End Message ---
--- Begin Message ---
Source: wmtv
Source-Version: 0.6.6-1

We believe that the bug you reported is fixed in the latest version of
wmtv, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 813...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Doug Torrance  (supplier of updated wmtv package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Source: wmtv
Binary: wmtv
Architecture: source amd64
Version: 0.6.6-1
Distribution: unstable
Urgency: medium
Maintainer: John Paul Adrian Glaubitz 
Changed-By: Doug Torrance 
Description:
 wmtv   - Dockable video4linux TV player for WindowMaker
Closes: 813253
Changes:
 wmtv (0.6.6-1) unstable; urgency=medium
 .
   * New upstream release.
 - Includes all previous Debian patches.
   * New maintainer (Debian Window Maker Team) (Closes: #813253).
   * debian/control
 - Tidy up using wrap-and-sort.
 - Add dh-autoreconf and pkg-config to Build-Depends.
 - Add Homepage and Vcs-* fields.
   * debian/copyright
 - Update to DEP5 format.
   * debian/dirs
 - Remove unnecessary file.
   * debian/README.Debian
 - Remove file; note about upstream is out of date and other information is
   covered in the manpage.
   * debian/rules
 - Update to use dh with dh_autoreconf and enable all hardening flags.
 - Link with -Wl,--as-needed to avoid dpkg-shlibdeps "useless dependency"
   warnings.
 - Add get-orig-source target.
   * debian/source/format
 - New file; use 3.0 (quilt).
   * debian/watch
 - New file.
   * debian/wmtv.1
 - Remove file; added upstream.
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Bug#804698: RFP: muchsync -- synchronize maildirs and notmuch databases

[anarcat]

On Tue, Nov 10, 2015 at 11:24:27AM -0500, Antoine Beaupré wrote:
>  * it works! or at least i think it does: i'm testing it right now

Actually, it doesn't work: I sent an email to the upstream author about
this and to the notmuch mailing list, but basically, here it eats up all
memory before being killed by the OOM-killer. (~11GB of mail).

A.

-- 
It will be a great day when our schools get all the money they need
and the air force has to hold a bake sale to buy a bomber.
- Unknown

Bug#813443: ITP: libneo4j-client -- Client library and shell for Neo4j

[Chris Leishman]

Package: wnpp
Severity: wishlist
Owner: Chris Leishman 

* Package name: libneo4j-client
  Version : 0.7.1
  Upstream Author : Chris Leishman 
* URL : https://cleishm.github.io/libneo4j-client/
* License : Apache-2.0
  Programming Lang: C
  Description : Client library and shell for Neo4j

libneo4j-client is a client library that takes care of all the detail of
extablishing a session with a Neo4j server, sending statements for evaluation 
and
retrieving results.

neo4j-client is a shell client for connecting to a Neo4j server, sending 
statements
and rendering results to tables or CSV.

I am the upstream author of libneo4j-client.

Bug#810240: marked as done (ITP: libncl -- NEXUS Class Library)

[Debian Bug Tracking System]

Your message dated Mon, 01 Feb 2016 16:03:07 +
with message-id 
and subject line Bug#810240: fixed in libncl 2.1.18+dfsg-1
has caused the Debian Bug report #810240,
regarding ITP: libncl -- NEXUS Class Library
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
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Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille 

* Package name: libncl
  Version : 2.1.18
  Upstream Author : Mark T. Holder 
* URL : http://sourceforge.net/projects/ncl/
* License : GPL
  Programming Lang: C++
  Description : NEXUS Class Library
 The NEXUS Class Library is a C++ library for parsing NEXUS files.
 .
 The NEXUS file format is widely used in bioinformatics. Several popular
 phylogenetic programs such as Paup, MrBayes, Mesquite, and MacClade use
 this format.


Remark: This package is a precondition for garli
(https://github.com/Ashod/garli).  It will be maintained by the Debian
Med team at
  git://anonscm.debian.org/debian-med/libncl.git
--- End Message ---
--- Begin Message ---
Source: libncl
Source-Version: 2.1.18+dfsg-1

We believe that the bug you reported is fixed in the latest version of
libncl, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 810...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated libncl package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Thu, 07 Jan 2016 15:41:27 +0100
Source: libncl
Binary: ncl-tools libncl1 libncl-dev
Architecture: source amd64
Version: 2.1.18+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 

Changed-By: Andreas Tille 
Description:
 libncl-dev - NEXUS Class Library (static lib and header files)
 libncl1- NEXUS Class Library
 ncl-tools  - tools to deal with NEXUS files
Closes: 810240
Changes:
 libncl (2.1.18+dfsg-1) unstable; urgency=low
 .
   * Initial release (Closes: #810240)
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libncl-dev_2.1.18+dfsg-1_amd64.deb
 

Processed: block 813308 with 697477

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> block 813308 with 697477
Bug #813308 [wnpp] ITP: xdg-app -- Application deployment framework for desktop 
apps
813308 was blocked by: 813306
813308 was not blocking any bugs.
Added blocking bug(s) of 813308: 697477
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
813308: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=813308
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Contact ow...@bugs.debian.org with problems

Processed: block 813308 with 813306

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> block 813308 with 813306
Bug #813308 [wnpp] ITP: xdg-app -- Application deployment framework for desktop 
apps
813308 was not blocked by any bugs.
813308 was not blocking any bugs.
Added blocking bug(s) of 813308: 813306
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
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Bug#697477: ITP: ostree

[Simon McVittie]

[Re-sending because it doesn't seem to have reached the bug, with links
added; sorry if you get this twice.]

Hi,
I've been looking at ostree recently, with the intention of using it in
conjunction with xdg-app. David King and Alexander Larsson have made
some Ubuntu PPA packages, which don't necessarily have all the
integration that you had in mind, but they have the advantage of already
existing. Even if they can only deploy non-Debian distributions, that's
a good start.

Would you mind if I tidy up those packages and get them into experimental?

Would you like to be a co-maintainer?

I had been intending to put them under the pkg-utopia umbrella, but
collab-maint might be more appropriate if people outside that team are
interested.

Here is my work-in-progress and a blog post about it:

https://smcv.pseudorandom.co.uk/2016/xdg-app/
https://anonscm.debian.org/cgit/users/smcv/ostree.git

Regards,
S

Processed: block 697477 with 813306

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> block 697477 with 813306
Bug #697477 [wnpp] ITP: ostree -- Linux-based operating system 
develop/build/deploy tool
697477 was not blocked by any bugs.
697477 was not blocking any bugs.
Added blocking bug(s) of 697477: 813306
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
697477: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=697477
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

Bug#697477: ITP: ostree

[Matthias Klumpp]

Hi!
I'm currently at a post-FOSDEM sprint, so I have less time - a
detailed reply will follow :-)

2016-02-01 17:15 GMT+01:00 Simon McVittie :
> [Re-sending because it doesn't seem to have reached the bug, with links
> added; sorry if you get this twice.]
>
> Hi,
> I've been looking at ostree recently, with the intention of using it in
> conjunction with xdg-app. David King and Alexander Larsson have made
> some Ubuntu PPA packages, which don't necessarily have all the
> integration that you had in mind, but they have the advantage of already
> existing. Even if they can only deploy non-Debian distributions, that's
> a good start.
>
> Would you mind if I tidy up those packages and get them into experimental?

That sounds like a good plan! For OSTree I wanted to upload it when it
is fully useful for its intended purpose in Debian, that is managing
the base system with it. I'm obviously not yet there.
I would have worked on xdg-app already, but it currently depends on
the obsolete libgsystem, which I didn't want to (re)introduce in
Debian, also I have a lot of work already - so thanks for working on
this matter!
I would like to help with it and co-maintain the package. Also talked
with Alexander Larsson a bit about xdg-app on Debian this FOSDEM.
Regarding packaging teams, I wonder whether it would make sense to
start a new team and move related software under that umbrella.
Specificallly, putting xdg-app, Limba, AppStream, appstream-glib and
ostree together might make sense - right now,I am maintaining most of
them in the pkg-packagekit Git repo.


> Would you like to be a co-maintainer?
Yes, definitely :-) Thank you for asking me!

> Here is my work-in-progress and a blog post about it:
>
> https://smcv.pseudorandom.co.uk/2016/xdg-app/
> https://anonscm.debian.org/cgit/users/smcv/ostree.git

Thanks, I hopefully have time to read this this evening.

Greetings from Brussels!
Matthias



-- 
I welcome VSRE emails. See http://vsre.info/

Bug#813408: ITP: brig -- BLAST Ring Image Generator

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille 

* Package name: brig
  Version : 0.95
  Upstream Author : Nabil Alikhan
* URL : http://sourceforge.net/projects/brig/
* License : GPL
  Programming Lang: Java
  Description : BLAST Ring Image Generator
 BRIG can display circular comparisons between a large number of genomes,
 with a focus on handling genome assembly data.
  * Images show similarity between a central reference sequence and other
sequences as concentric rings.
  * BRIG will perform all BLAST comparisons and file parsing automatically
via a simple GUI.
  * Contig boundaries and read coverage can be displayed for draft genomes;
customized graphs and annotations can be displayed.
  * Using a user-defined set of genes as input, BRIG can display gene
presence, absence, truncation or sequence variation in a set of
complete genomes, draft genomes or even raw, unassembled sequence data.
  * BRIG also accepts SAM-formatted read-mapping files enabling genomic
regions present in unassembled sequence data from multiple samples to
be compared simultaneously


This package is maintained by the Debian Med team at
   Vcs-Git: git://anonscm.debian.org/debian-med/brig.git

Processed: retitle 653617 to ITA: scummvm-tools -- collection of tools for ScummVM, owner 653617

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> retitle 653617 ITA: scummvm-tools -- collection of tools for ScummVM
Bug #653617 [wnpp] RFP: scummvm-tools -- A collection of various tools for 
ScummVM
Changed Bug title to 'ITA: scummvm-tools -- collection of tools for ScummVM' 
from 'RFP: scummvm-tools -- A collection of various tools for ScummVM'
> owner 653617 !
Bug #653617 [wnpp] ITA: scummvm-tools -- collection of tools for ScummVM
Owner recorded as Stephen Kitt .
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
653617: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=653617
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

Processed: retitle 653617 to ITP: scummvm-tools -- collection of tools for ScummVM

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> retitle 653617 ITP: scummvm-tools -- collection of tools for ScummVM
Bug #653617 [wnpp] ITA: scummvm-tools -- collection of tools for ScummVM
Changed Bug title to 'ITP: scummvm-tools -- collection of tools for ScummVM' 
from 'ITA: scummvm-tools -- collection of tools for ScummVM'
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
653617: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=653617
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

Bug#798511: marked as done (ITP: iqtree -- efficient phylogenetic software by maximum likelihood)

[Debian Bug Tracking System]

Your message dated Mon, 01 Feb 2016 16:00:33 +
with message-id 
and subject line Bug#798511: fixed in iqtree 1.3.11.1+dfsg-1
has caused the Debian Bug report #798511,
regarding ITP: iqtree -- efficient phylogenetic software by maximum likelihood
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
798511: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798511
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille 

* Package name: iqtree
  Version : 1.3.8
  Upstream Author : Lam Tung Nguyen , Bui Quang Minh 

* URL : http://www.cibiv.at/software/iqtree/
* License : GPL
  Programming Lang: C++
  Description : efficient phylogenetic software by maximum likelihood
 IQ-TREE is a very efficient maximum likelihood phylogenetic software
 with following key features among others:
 .
  * A novel fast and effective stochastic algorithm to estimate maximum
likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms
of likelihood while requiring similar amount of computing time (see
Nguyen et al., 2015)
  * An ultrafast bootstrap approximation to assess branch supports (see
Minh et al., 2013).
  * A wide range of substitution models for binary, DNA, protein, codon,
and morphological alignments.
  * Ultrafast model selection for all data types, 10 to 100 times faster
than jModelTest and ProtTest.
  * Finding best partition scheme like PartitionFinder.
  * Partitioned models with mixed data types for phylogenomic (multi-
gene) alignments, allowing for separate, proportional, or joint
branch lengths among genes.
  * Supporting the phylogenetic likelihod library (PLL) (see Flouri et
al., 2014)

Remark: This package is maintained by the Debian Med team at
git://anonscm.debian.org/debian-med/iqtree.git
--- End Message ---
--- Begin Message ---
Source: iqtree
Source-Version: 1.3.11.1+dfsg-1

We believe that the bug you reported is fixed in the latest version of
iqtree, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 798...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated iqtree package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 17 Dec 2015 17:13:25 +0100
Source: iqtree
Binary: iqtree
Architecture: source amd64
Version: 1.3.11.1+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 

Changed-By: Andreas Tille 
Description:
 iqtree - efficient phylogenetic software by maximum likelihood
Closes: 798511
Changes:
 iqtree (1.3.11.1+dfsg-1) unstable; urgency=low
 .
   * Initial release (Closes: #798511)
Checksums-Sha1:
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iqtree_1.3.11.1+dfsg-1.debian.tar.xz
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iqtree_1.3.11.1+dfsg-1_amd64.deb
Files:
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iqtree_1.3.11.1+dfsg-1.dsc
 0f459a383b9b8c298aa6cdc1489355b4 1429144 science optional 
iqtree_1.3.11.1+dfsg.orig.tar.xz
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iqtree_1.3.11.1+dfsg-1.debian.tar.xz
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iqtree_1.3.11.1+dfsg-1_amd64.deb

-BEGIN PGP SIGNATURE-
Version: GnuPG v1

Processed: retitle 806694 ITP: specutils

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> retitle 806694 ITP: specutils -- Base classes and utilities for astronomical 
> spectra in Python
Bug #806694 [wnpp] ITP: spectutils -- Base classes and utilities for 
astronomical spectra in Python
Changed Bug title to 'ITP: specutils -- Base classes and utilities for 
astronomical spectra in Python' from 'ITP: spectutils -- Base classes and 
utilities for astronomical spectra in Python'
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
806694: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=806694
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

Bug#813385: ITP: reapr -- universal tool for genome assembly evaluation

[Sascha Steinbiss]

Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss 

* Package name: reapr
  Version : 1.0.18 
  Upstream Author : Martin Hunt  
* URL : http://www.sanger.ac.uk/science/tools/reapr 
* License : GPL
  Programming Lang: C++, Perl
  Description : universal tool for genome assembly evaluation

REAPR is a tool that evaluates the accuracy of a genome assembly using mapped
paired end reads, without the use of a reference genome for comparison. It can
be used in any stage of an assembly pipeline to automatically break incorrect
scaffolds and flag other errors in an assembly for manual inspection. It
reports mis-assemblies and other warnings, and produces a new broken assembly
based on the error calls.
The software requires as input an assembly in FASTA format and paired reads
mapped to the assembly in a BAM file. Mapping information such as the fragment
coverage and insert size distribution is analysed to locate mis-assemblies.
REAPR works best using mapped read pairs from a large insert library (at least
1000bp). Additionally, if a short insert Illumina library is also available,
REAPR can combine this with the large insert library in order to score each
base of the assembly.

This package will be maintained under the umbrella of the Debian Med Packaging
Team.

Bug#813402: RFP: duck -- Command-line interface for Cyberduck (a multi-protocol file transfer tool)

[Pierre Rudloff]

Package: wnpp
Severity: wishlist

* Package name: duck
  Version : 4.8
  Upstream Author : cybderduck.io 
* URL : https://duck.sh/
* License : GPL
  Programming Lang: Java
  Description : Command-line interface for Cyberduck (a multi-protocol file
transfer tool)

Bug#813325: ITP: xf86-video-ast -- X.Org X server -- ASpeed Technologies display driver

[Julien Cristau]

On Sun, Jan 31, 2016 at 17:34:38 +0100, Hilko Bengen wrote:

> I have the package ready for upload and would like to put it under
> collaborative maintenance with the X Strike Force.
> 
Sounds good to me, please feel free to apply to pkg-xorg on alioth,
we'll get you added.

Thanks,
Julien

Bug#806495: marked as done (ITP: cgview -- Circular Genome Viewer)

[Debian Bug Tracking System]

Your message dated Mon, 01 Feb 2016 16:00:23 +
with message-id 
and subject line Bug#806495: fixed in cgview 0.0.20100111-1
has caused the Debian Bug report #806495,
regarding ITP: cgview -- Circular Genome Viewer
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
806495: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=806495
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille 

* Package name: cgview
  Version : 0.0.20100111
  Upstream Author : David S. Wishart
* URL : http://wishart.biology.ualberta.ca/cgview/
* License : GPL
  Programming Lang: Java
  Description : Circular Genome Viewer
 CGView is a Java package for generating high quality, zoomable maps of
 circular genomes. Its primary purpose is to serve as a component of
 sequence annotation pipelines, as a means of generating visual output
 suitable for the web. Feature information and rendering options are
 supplied to the program using an XML file, a tab delimited file, or an
 NCBI ptt file. CGView converts the input into a graphical map (PNG, JPG,
 or Scalable Vector Graphics format), complete with labels, a title,
 legends, and footnotes. In addition to the default full view map, the
 program can generate a series of hyperlinked maps showing expanded
 views. The linked maps can be explored using any web browser, allowing
 rapid genome browsing, and facilitating data sharing. The feature labels
 in maps can be hyperlinked to external resources, allowing CGView maps
 to be integrated with existing web site content or databases.
 .
 In addition to the CGView application, an API is available for
 generating maps from within other Java applications, using the
 cgview package.
 .
 CGView can be used for any of the following:
  * Bacterial genome visualization and browsing - CGView can be
incorporated into bacterial genome annotation pipelines, as a means
of generating web content for data visualization and navigation. The
PNG and image map content does not require Java applets or special
browser plugins.
  * Genome poster generation - CGView can generate poster-sized images of
circular genomes in rasterized image formats or in Scalable Vector
Graphics format.
  * Sequence analysis visualization - CGView can be used to display the
output of sequence analysis programs in a circular context.
 .
 CGView features:
  * Images can be generated in PNG, JPG, or SVG format. See the
CGView gallery.
  * Static or interactive maps can be generated. The interactive maps
make use of standard PNG images and HTML image maps. Scalable Vector
Graphics output is included in the interactive maps (see example).
  * The XML input allows complete control over the appearance of the map.
  * Tab delimited input files and NCBI ptt files can be used as an
alternative to the XML format.
  * The CGView API can be used to incorporate CGView into Java
applications.
  * The CGView applet can be used to incorporate zoomable maps into web
pages (see example).
  * The CGView Server can be used to generate maps online.


Remark: This package is maintained by the Debian Med team at
git://anonscm.debian.org/debian-med/cgview.git
--- End Message ---
--- Begin Message ---
Source: cgview
Source-Version: 0.0.20100111-1

We believe that the bug you reported is fixed in the latest version of
cgview, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 806...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated cgview package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 27 Nov 2015 23:37:36 +0100
Source: cgview
Binary: cgview
Architecture: source amd64
Version: 0.0.20100111-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 

Changed-By: Andreas Tille 
Description:
 cgview - Circular Genome Viewer
Closes: 806495
Changes:
 cgview (0.0.20100111-1) 

Bug#813186: marked as done (ITP: ruby-sentry-raven -- client interface for the Sentry error logger)

[Debian Bug Tracking System]

Your message dated Mon, 01 Feb 2016 16:03:11 +
with message-id 
and subject line Bug#813186: fixed in ruby-sentry-raven 0.15.3-1
has caused the Debian Bug report #813186,
regarding ITP: ruby-sentry-raven -- client interface for the Sentry error logger
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
813186: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=813186
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Balasankar C 

* Package name: ruby-sentry-raven
  Version : 0.15.3
  Upstream Author : Sentry
* URL : https://github.com/getsentry/raven-ruby
* License : Apache-2.0
  Programming Lang: Ruby
  Description : client interface for the Sentry error logger
--- End Message ---
--- Begin Message ---
Source: ruby-sentry-raven
Source-Version: 0.15.3-1

We believe that the bug you reported is fixed in the latest version of
ruby-sentry-raven, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 813...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Balasankar C  (supplier of updated ruby-sentry-raven 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Hash: SHA256

Format: 1.8
Date: Sat, 30 Jan 2016 12:31:09 +0530
Source: ruby-sentry-raven
Binary: ruby-sentry-raven
Architecture: source all
Version: 0.15.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Ruby Extras Maintainers 

Changed-By: Balasankar C 
Description:
 ruby-sentry-raven - client interface for the Sentry error logger
Closes: 813186
Changes:
 ruby-sentry-raven (0.15.3-1) unstable; urgency=medium
 .
   * Initial release (Closes: #813186)
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Bug#813286: marked as done (ITP: elpa-with-editor -- Use the Emacsclient as $EDITOR)

[Debian Bug Tracking System]

Your message dated Mon, 01 Feb 2016 16:03:14 +
with message-id 
and subject line Bug#813286: fixed in with-editor 2.5.0-1
has caused the Debian Bug report #813286,
regarding ITP: elpa-with-editor -- Use the Emacsclient as $EDITOR
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
813286: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=813286
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Owner: Rémi Vanicat 
Severity: wishlist

* Package name: elpa-with-editor
  Version : 2.5.0
  Upstream Author : The Magit Project Contributors
* URL or Web page : https://github.com/magit/with-editor
* License : GPLv3+
  Description : Use the Emacsclient as $EDITOR

This library makes it possible to reliably use the Emacsclient as the
`$EDITOR' of child processes.  It makes sure that they know how to call
home.  For remote processes a substitute is provided, which communicates
with Emacs on standard output/input instead of using a socket as the
Emacsclient does.

This Emacs extension used to be part of magit, but has been split
upstream, because it can be useful to other Emacs extension.

-- 
Rémi Vanicat
--- End Message ---
--- Begin Message ---
Source: with-editor
Source-Version: 2.5.0-1

We believe that the bug you reported is fixed in the latest version of
with-editor, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 813...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Rémi Vanicat  (supplier of updated with-editor package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 31 Jan 2016 11:37:51 +0100
Source: with-editor
Binary: elpa-with-editor
Architecture: source all
Version: 2.5.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Emacs addons team 

Changed-By: Rémi Vanicat 
Description:
 elpa-with-editor - Call program using Emacs as $EDITOR
Closes: 813286
Changes:
 with-editor (2.5.0-1) unstable; urgency=medium
 .
   * As upstream has split this from magit, creating a new package.
   * Closing ITP (Closes: #813286).
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elpa-with-editor_2.5.0-1_all.deb

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Processed: your mail

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> retitle 722451 RFS: Compiz -- Compositing "3G" window manager
Bug #722451 [wnpp] ITP: compiz -- Compositing "3D" window manager
Changed Bug title to 'RFS: Compiz -- Compositing "3G" window manager' from 
'ITP: compiz -- Compositing "3D" window manager'
> Thanks
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722451: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=722451
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