Processed: block 990640 with 990638

2021-07-10 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> block 990640 with 990638
Bug #990640 [e-antic] e-antic: new major uptream version 1.0.x
990640 was not blocked by any bugs.
990640 was not blocking any bugs.
Added blocking bug(s) of 990640: 990638
> thanks
Stopping processing here.

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Bug#990909: RFP: elpa-treemacs -- a tree layout file explorer for Emacs

2021-07-10 Thread Martin
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: debian-emac...@lists.debian.org

* Package name: elpa-treemacs
  Version : 2.8
  Upstream Author : Alexander Miller 
* URL : https://github.com/Alexander-Miller/treemacs
* License : GPL-3+
  Programming Lang: Emacs-Lisp
  Description : a tree layout file explorer for Emacs

 Treemacs is a file and project explorer similar to NeoTree or vim’s NerdTree,
 but largely inspired by the Project Explorer in Eclipse. It shows the file
 system outlines of your projects in a simple tree layout allowing quick
 navigation and exploration, while also possessing basic file management
 utilities.



Bug#820848: RFS: phcpack 2.4.84 (NEW)

2021-07-10 Thread Torrance, Douglas

On Thu 08 Jul 2021 12:24:47 AM EDT, Torrance, Douglas  
wrote:

On Wed 07 Jul 2021 08:37:08 AM EDT, Doug Torrance  
wrote:

On Wed 07 Jul 2021 01:16:03 AM EDT, Nilesh Patra  wrote:

./src/Ada/Math_Lib/QD/READ_ME states this:

The main reference for the QD-2.3.9 library is
Y. Hida, X.S. Li, and D.H. Bailey:
"Algorithms for quad-double precision floating point arithmetic."
In 15th IEEE Symposium on Computer Arithmetic (Arith-15 2001),
11-17 June 2001, Vail, CO, USA, pages 155-162. IEEE Computer Society, 2001.
Shortened version of Technical Report LBNL-46996,
software at http://crd.lbl.gov/~dhbailey/mpdist/qd-2.3.9.tar.gz.

Note that the "BSD-LBNL-License" is GPL compatible, although
"If you wish to use the software for commercial purposes
please contact the Technology Transfer Department at t...@lbl.gov or
call 510-286-6457."

I admit, I'm not very sure if I understand the terms there correctly, but
should it be mentioned in d/copyright?
I also see similar stuff in a lot of READ_ME files,
./src/Ada/Root_Counts/MixedVol/READ_ME for instance.

Do they need to be mentioned in d/copyright? If not, IMO adding a
"Comment:" and the reasoning for not adding these in copyright would be
good.


Good catch!  I've sent upstream a note asking for clarification on the license
of the files in this directory.


Upstream confirmed that this particular feature would cause limitations for
commercial use due to the license.  It's just one feature, though, and I think
that PHCpack would still be a valuable addition to Debian without it.  (For
example, the PHCpack package in Macaulay2 doesn't use it.)

I'll spend some time working on stripping this feature out to create a
DFSG-compliant version of PHCpack and ping the list when it's ready for another
look.


I've repacked the PHCpack package so that it doesn't use the non-free QD
library.  I believe it's ready for another review:
https://salsa.debian.org/science-team/phcpack

Thanks!
Doug


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Processed: ITP: python-pyspoa -- Python bindings to spoa

2021-07-10 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> owner 990896 Nilesh Patra 
Bug #990896 [wnpp] ITP: python-pyspoa -- Python bindings to spoa
Owner recorded as Nilesh Patra .
>
End of message, stopping processing here.

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Bug#990896: ITP: python-pyspoa -- Python bindings to spoa

2021-07-10 Thread Nilesh Patra
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: nil...@debian.org

Subject: ITP: python-pyspoa -- Python bindings to spoa
Package: wnpp
Owner: Nilesh Patra 
Severity: wishlist

* Package name: python-pyspoa
  Version : 0.0.8
  Upstream Author : Oxford Nanopore Technologies
* URL : https://github.com/nanoporetech/pyspoa
* License : Expat
  Programming Lang: Python
  Description : Python bindings to spoa
 Spoa (SIMD POA) is a c++ implementation of the partial order alignment
 (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
 is used to generate consensus sequences (as described in
 10.1093/bioinformatics/btg109). It supports three alignment modes: local
 (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
 (overlap).
 .
 This package presents Python bindings for the spoa library

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/python-pyspoa



Bug#990894: ITP: golang-github-d2r2-go-logger -- Go logger functionality with package-level logging separation

2021-07-10 Thread Benjamin Drung
Package: wnpp
Severity: wishlist
Owner: Benjamin Drung 
X-Debbugs-Cc: debian-de...@lists.debian.org

* Package name: golang-github-d2r2-go-logger
  Version : 0.0~git20210606.60e9d12-1
  Upstream Author : Denis Dyakov
* URL : https://github.com/d2r2/go-logger
* License : MIT
  Programming Lang: Go
  Description : Go logger functionality with package-level logging 
separation

 Functionality of this package is similar to logrus and other popular Go
 logging packages, but still the capabilities of this package are not as
 flexible and advanced as the mentioned popular packages.
 .
 One of the reasons for creating this library was the ability to log with more
 verbosity levels. For instance, it has Fatal, Panic, Error, Warning, Notify,
 Information and Debug levels, while others ordinary do not include Notify
 verbosity.

I am still working on a Prometheus sensors exporter which is using
go-bsbmp, go-sht3x, and go-logger. I will maintain these libraries as
part of the Debian Go Packaging Team.

-- 
Benjamin Drung
Debian & Ubuntu Developer



Bug#609047: An update on CCL for Debian

2021-07-10 Thread Sébastien Villemot
I’ve recently tried to reevaluate the situation regarding CCL in
Debian.

In short, the answer is unfortunately that it’s not yet possible to
package CCL, but there is however the hope that the situation will
improve at some point.

What prevents CCL from being packaged Debian is the ffigen tool, which
is required at build time to generate various FFI bindings. The latest
functional version of this tool (ffigen4) is essentially a patch over
GCC 4. The ftpmasters refused to have this in the archive (see above).

There is however an ongoing effort to rewrite ffigen, see:
https://github.com/Clozure/ccl/issues/13

The rewrite is essentially a small executable depending on libclang,
and is now dubbed ffigen5.

I’ve tried it, and even though it is able to parse many C headers, it
still fails at some. So it’s not yet ready for use. But hopefully it
will be at some point, which should clear the way for CCL in Debian.

-- 
⢀⣴⠾⠻⢶⣦⠀  Sébastien Villemot
⣾⠁⢠⠒⠀⣿⡁  Debian Developer
⢿⡄⠘⠷⠚⠋⠀  https://sebastien.villemot.name
⠈⠳⣄  https://www.debian.org



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Bug#990885: ITP: intel-acm: Authenticated code modules for Intel CPUs

2021-07-10 Thread Timo Lindfors

Package: wnpp
Severity: wishlist
Owner: Paulo Roberto Alves de Oliveira (aka kretcheu) 

* Package name: intel-acm
  Version : 20210710
  Upstream Author : Intel Corporation
* URL : 
https://software.intel.com/content/www/us/en/develop/articles/intel-trusted-execution-technology.html
* License : non-free, idzla-SINIT Authenticated Code Module License
  Description : Authenticated code modules for Intel CPUs

 This package contains updated authenticated code modules (ACMs) for
 Intel processors.



Processed: ITP: surpyvor -- modification of VCF files with SURVIVOR

2021-07-10 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> owner 990883 Steffen Moeller 
Bug #990883 [wnpp] ITP: surpyvor -- modification of VCF files with SURVIVOR
Owner recorded as Steffen Moeller .
>
End of message, stopping processing here.

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990883: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=990883
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Bug#990883: ITP: surpyvor -- modification of VCF files with SURVIVOR

2021-07-10 Thread Steffen Moeller
Package: wnpp
Severity: wishlist

Subject: ITP: surpyvor -- modification of VCF files with SURVIVOR
Package: wnpp
Owner: Steffen Moeller 
Severity: wishlist

* Package name: surpyvor
  Version : 0.5
  Upstream Author : Wouter De Coster 
* URL : https://github.com/wdecoster/surpyvor
* License : MIT
  Programming Lang: Python
  Description : modification of VCF files with SURVIVOR
 SURVIVOR is a tool set for simulating/evaluating
 structural variantions, merging and comparing SVs within
 and among samples, and includes various methods to
 reformat or summarize structural variantions.
 .
 This package provides a Python wrapper to help with its
 integration in various Python-based workflows.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/surpyvor



Bug#990881: ITP: gn -- meta-build system that generates build files for Ninja

2021-07-10 Thread Boyuan Yang
X-Debbugs-CC: debian-de...@lists.debian.org

https://tracker.debian.org/pkg/generate-ninja

Hideki Yamane  于2021年7月10日周六 上午8:03写道:

>
> Package: wnpp
> Severity: wishlist
> Owner: Hideki Yamane 
> X-Debbugs-Cc: debian-de...@lists.debian.org
>
> * Package name: gn
>   Upstream Author : The Chromium Authors
> * URL : https://gn.googlesource.com/gn
> * License : BSD-3-Clause
>   Programming Lang: C++
>   Description : meta-build system that generates build files for Ninja
>
>  It can generate Ninja build files for C, C++, Rust, Objective C, and Swift
>  source on most popular platforms. Other languages can be compiled using
>  the general “action” rules which are executed by Python or another scripting
>  language (Google does this to compile Java and Go). But because this is not
>  as clean, generally GN is only used when the bulk of the build is in one of
>  the main built-in languages.

-- 
Thanks,
Boyuan Yang



Bug#990881: marked as done (ITP: gn -- meta-build system that generates build files for Ninja)

2021-07-10 Thread Debian Bug Tracking System
Your message dated Sat, 10 Jul 2021 22:24:36 +0900
with message-id <20210710222436.c324b6d39a0262602c3f2...@iijmio-mail.jp>
and subject line Re: Bug#990881: ITP: gn -- meta-build system that generates 
build files for Ninja
has caused the Debian Bug report #990881,
regarding ITP: gn -- meta-build system that generates build files for Ninja
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Hideki Yamane 
X-Debbugs-Cc: debian-de...@lists.debian.org

* Package name: gn
  Upstream Author : The Chromium Authors
* URL : https://gn.googlesource.com/gn
* License : BSD-3-Clause
  Programming Lang: C++
  Description : meta-build system that generates build files for Ninja

 It can generate Ninja build files for C, C++, Rust, Objective C, and Swift
 source on most popular platforms. Other languages can be compiled using
 the general “action” rules which are executed by Python or another scripting
 language (Google does this to compile Java and Go). But because this is not
 as clean, generally GN is only used when the bulk of the build is in one of
 the main built-in languages.
--- End Message ---
--- Begin Message ---
On Sat, 10 Jul 2021 21:01:57 +0900
Hideki Yamane  wrote:
> * Package name: gn

 Oops, it exists as generate-ninja I couldn't find it :(
 I'll file a wishlist to grep "GN" for its description.


-- 
Regards,

 Hideki Yamane henrich @ debian.org/iijmio-mail.jp--- End Message ---


Bug#990881: ITP: gn -- meta-build system that generates build files for Ninja

2021-07-10 Thread Hideki Yamane
Package: wnpp
Severity: wishlist
Owner: Hideki Yamane 
X-Debbugs-Cc: debian-de...@lists.debian.org

* Package name: gn
  Upstream Author : The Chromium Authors
* URL : https://gn.googlesource.com/gn
* License : BSD-3-Clause
  Programming Lang: C++
  Description : meta-build system that generates build files for Ninja

 It can generate Ninja build files for C, C++, Rust, Objective C, and Swift
 source on most popular platforms. Other languages can be compiled using
 the general “action” rules which are executed by Python or another scripting
 language (Google does this to compile Java and Go). But because this is not
 as clean, generally GN is only used when the bulk of the build is in one of
 the main built-in languages.


Bug#990874: ITP: drf-yasg-nonfree -- Yet another Swagger generator

2021-07-10 Thread Carsten Schoenert
Package: wnpp
Severity: wishlist
Owner: Carsten Schoenert 
X-Debbugs-Cc: debian-de...@lists.debian.org

* Package name: drf-yasg-nonfree
  Version : 1.20.0
  Upstream Author : Cristi V. 
* URL : https://github.com/axnsan12/drf-yasg
* License : BSD-3-clause
  Programming Lang: Python
  Description : Yet another Swagger generator

 Generate real Swagger/OpenAPI 2.0 specifications from a Django Rest Framework
 API.
 Features of drf-yasg:
  * full support for nested Serializers and Schemas
  * response schemas and descriptions
  * model definitions compatible with codegen tools
  * customization hooks at all points in the spec generation process
  * JSON and YAML format for spec
  * bundles latest version of swagger-ui
(https://github.com/swagger-api/swagger-ui) and redoc
(https://github.com/Rebilly/ReDoc) for viewing the generated documentation
  * schema view is cacheable out of the box
  * generated Swagger schema can be automatically validated by
swagger-spec-validator (https://github.com/Yelp/swagger_spec_validator)
  * supports Django REST Framework API versioning with URLPathVersioning
and NamespaceVersioning; other DRF or custom versioning schemes are
not currently supported

Some parts of the upstream data are shipped pre-generated within the
source, the package built isn't able to rebuild these files from source
for various reasons. Mainly because the used JS files aren't packaged
yet for Debian.
This makes the resulting package non-free from the DFSG PoV. That's why
I decided to use the suffix '-nonfree' for now. Resulting also the binary
packages will go into non-free.

If someone is willing to help making this package DFSG compatible I'd
really be glad to take such an offer.

This package is a dependency for netbox I consider to package.

The package will get maintained within the Debian Python Team.