Package: wnpp Severity: wishlist Owner: Sascha Steinbiss <steinb...@zbh.uni-hamburg.de>
* Package name : ltrsift Version : 1.0.1 Upstream Author : Sascha Steinbiss <steinb...@zbh.uni-hamburg.de> * URL : http://www.zbh.uni-hamburg.de/LTRsift * License : GPL Programming Lang: C Description : postprocessing and classification of LTR retrotransposons LTRsift is a graphical bioinformatics tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest (included in the genometools package). Its user-friendly GTK interface displays LTR retrotransposon candidates, their putative families and their internal structure in a hierarchical fashion, allowing the user to "sift" through the sometimes large results of de novo prediction software. It also offers customizable filtering and classification functionality. List of features: * wizard-guided project creation and automated pre-classification * "drag-and-drop'' manual family assignment * candidate filtering based on dynamic, customizable rule sets, defined in a simple programming language (Lua) * reference matching against custom FASTA files (BLAST required) * ORF detection * concise, customizable visualization of candidate structure * candidate lists can be sorted by column values -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20121008124731.29833.35442.reportbug@eden.localdomain
