There is a popup in the web interface announcing new upstream versions,
the text is "A new version of Domoticz is Available!"

This should probably be disabled for the package, as updates are managed
through Debian.

Is there a config option to disable the update check or does it require
a patch?

>From a privacy perspective it is also not a good idea for a package to
make un-necessary connections to upstream

Regards,

Daniel

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