Public bug reported:

Binary package hint: gnome-session

Here's what I do:

I go into System > Preferences > Startup Applications and disable
(uncheck) the applications I don't want to start.  I restart the system,
and yet those programs still started.  I look at Startup Applications
again, but they're still unchecked.  So, I go into ~/.config/autostart
and the .desktop links for all those applications are *still* in the
directory, even though I unchecked them in Startup Applications.  So, I
manually delete all the links, and restart.  The programs *still* start.
Then I go back into Startup Applications, and everything is magically
checked again.  Frustrating!

ProblemType: Bug
DistroRelease: Ubuntu 10.04
Package: gnome-session 2.30.0-0ubuntu1
ProcVersionSignature: Ubuntu 2.6.32-23.37-generic 2.6.32.15+drm33.5
Uname: Linux 2.6.32-23-generic i686
NonfreeKernelModules: nvidia
Architecture: i386
Date: Tue Jul  6 23:13:11 2010
InstallationMedia: Ubuntu 10.04 LTS "Lucid Lynx" - Release i386 (20100429)
PackageArchitecture: all
ProcEnviron:
 LANG=en_US.utf8
 SHELL=/bin/bash
SourcePackage: gnome-session

** Affects: gnome-session (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: apport-bug i386 lucid

-- 
gnome-session-properties / Startup Applications will *NOT* disable programs
https://bugs.launchpad.net/bugs/602554
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