[Desktop-packages] [Bug 1375637] Re: Premature end of data in tag file line 247651 with libxml2
I have seen a similar issue using 'yum check-update' on Ubunty Trusty with libxml2=2.9.1+dfsg1-3ubuntu4.8 failing to parse the primary.xml.gz index. $ yum check-update custom-repo: [### ] 6900/6903 (process:1482): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing primary.xml error: attributes construct error (process:1482): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing primary.xml error: Couldn't find end of Start Tag size line 238347 (process:1482): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing primary.xml error: Premature end of data in tag package line 238338 (process:1482): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing primary.xml error: Premature end of data in tag metadata line 2 Traceback (most recent call last): File "/usr/bin/yum", line 29, in yummain.user_main(sys.argv[1:], exit_code=True) File "/usr/share/yum-cli/yummain.py", line 288, in user_main errcode = main(args) File "/usr/share/yum-cli/yummain.py", line 140, in main result, resultmsgs = base.doCommands() File "/usr/share/yum-cli/cli.py", line 436, in doCommands self._getTs(needTsRemove) File "/usr/lib/python2.7/dist-packages/yum/depsolve.py", line 101, in _getTs self._getTsInfo(remove_only) File "/usr/lib/python2.7/dist-packages/yum/depsolve.py", line 112, in _getTsInfo pkgSack = self.pkgSack File "/usr/lib/python2.7/dist-packages/yum/__init__.py", line 892, in pkgSack = property(fget=lambda self: self._getSacks(), File "/usr/lib/python2.7/dist-packages/yum/__init__.py", line 673, in _getSacks self.repos.populateSack(which=repos) File "/usr/lib/python2.7/dist-packages/yum/repos.py", line 294, in populateSack sack.populate(repo, mdtype, callback, cacheonly) File "/usr/lib/python2.7/dist-packages/yum/yumRepo.py", line 190, in populate dobj = repo_cache_function(xml, csum) File "/usr/lib/python2.7/dist-packages/sqlitecachec.py", line 46, in getPrimary self.repoid)) TypeError: Parsing primary.xml error: Specification mandate value for attribute archive I have seen this a few times, but never took the time to dig into it until recently. What I found was the size of the primary.xml.gz file is what seems to be causing the failure. If (size of file in bytes)/(8192 bytes) has a remainder of 1 byte this failure will occur. Basically, in the case of "yum check-update", if the last read (that returns more than 0 bytes) on the primary.xml.gz file ONLY contains a single null character it fails. strace excerpt (with the primary.xml.gz as fd 5): read(5, "\0", 8192) = 1 read(5, "", 8191) = 0 After the above it fails immediately. Updating libxml2 to v2.9.3+dfsg1-1ubuntu0.2 from the Ubuntu Xenial repos seems to fix the problem, but that is not an acceptable solution in my case because the Xenial package brings in some other dependencies that I cannot update to. Any chance someone could fix this issue for Ubuntu Trusty? -- You received this bug notification because you are a member of Desktop Packages, which is subscribed to libxml2 in Ubuntu. https://bugs.launchpad.net/bugs/1375637 Title: Premature end of data in tag file line 247651 with libxml2 Status in libxml2 package in Ubuntu: Confirmed Bug description: Hello, I'm getting the following behaviour of createrepo on Ubuntu 14.04.1 LTS with libxml2=2.9.1+dfsg1-3ubuntu4.3(trusty-updates/main) and libxml2=2.9.1+dfsg1-3ubuntu4(trusty/main). createrepo -g /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/comps.xml \ -o /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ I/O error : No such file or directory (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag package line 246828
[Desktop-packages] [Bug 1375637] Re: Premature end of data in tag file line 247651 with libxml2
FWIW, I am currently experiencing the same error when running "createrepo" on a repo containing 20 RPMs. The host system is running Ubuntu 14.04.5 LTS, libxml2 version is 2.9.1+dfsg1-3ubuntu. For me, the error occurs every time, removing the repodata directories does not resolve this. % createrepo . Spawning worker 0 with 20 pkgs Workers Finished Saving Primary metadata Saving file lists metadata Saving other metadata Generating sqlite DBs I/O error : No such file or directory (process:18005): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag package line 2263 (process:18005): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag filelists line 2 Traceback (most recent call last): File "/usr/share/createrepo/genpkgmetadata.py", line 308, in main(sys.argv[1:]) File "/usr/share/createrepo/genpkgmetadata.py", line 280, in main mdgen.doRepoMetadata() File "/usr/lib/python2.7/dist-packages/createrepo/__init__.py", line 999, in doRepoMetadata rp.getFilelists(complete_path, csum) File "/usr/lib/python2.7/dist-packages/sqlitecachec.py", line 54, in getFilelists self.repoid)) TypeError: Parsing filelists.xml error: Premature end of data in tag file line 2332 -- You received this bug notification because you are a member of Desktop Packages, which is subscribed to libxml2 in Ubuntu. https://bugs.launchpad.net/bugs/1375637 Title: Premature end of data in tag file line 247651 with libxml2 Status in libxml2 package in Ubuntu: Confirmed Bug description: Hello, I'm getting the following behaviour of createrepo on Ubuntu 14.04.1 LTS with libxml2=2.9.1+dfsg1-3ubuntu4.3(trusty-updates/main) and libxml2=2.9.1+dfsg1-3ubuntu4(trusty/main). createrepo -g /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/comps.xml \ -o /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ I/O error : No such file or directory (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag package line 246828 (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag filelists line 2 Spawning worker 0 with 54 pkgs Spawning worker 1 with 54 pkgs Spawning worker 2 with 54 pkgs Spawning worker 3 with 54 pkgs Spawning worker 4 with 54 pkgs Spawning worker 5 with 54 pkgs Spawning worker 6 with 54 pkgs Spawning worker 7 with 54 pkgs Spawning worker 8 with 54 pkgs Spawning worker 9 with 54 pkgs Spawning worker 10 with 53 pkgs Spawning worker 11 with 53 pkgs Spawning worker 12 with 53 pkgs Spawning worker 13 with 53 pkgs Spawning worker 14 with 53 pkgs Spawning worker 15 with 53 pkgs Spawning worker 16 with 53 pkgs Spawning worker 17 with 53 pkgs Spawning worker 18 with 53 pkgs Spawning worker 19 with 53 pkgs Spawning worker 20 with 53 pkgs Spawning worker 21 with 53 pkgs Spawning worker 22 with 53 pkgs Spawning worker 23 with 53 pkgs Workers Finished Saving Primary metadata Saving file lists metadata Saving other metadata Generating sqlite DBs Traceback (most recent call last): File "/usr/share/createrepo/genpkgmetadata.py", line 308, in main(sys.argv[1:]) File "/usr/share/createrepo/genpkgmetadata.py", line 280, in main mdgen.doRepoMetadata() File "/usr/lib/python2.7/dist-packages/createrepo/__init__.py", line 999, in doRepoMetadata rp.getFilelists(complete_path, csum) File "/usr/lib/python2.7/dist-packages/sqlitecachec.py", line 55, in getFilelists self.repoid)) TypeError: Parsing filelists.xml error: Premature end of data in tag file line 247651 Problem fixes by installing libxml2=2.9.1+dfsg1 from debian sid. Comparing patchsets in debian package sources between 2.9.1+dfsg1 and 2.9.1+dfsg1-3ubuntu4.3 I see in debian package much more patches, I suppose one of them helps in my problem: 2.9.1+dfsg1-3ubuntu4.3: 0001-modify-xml2-config-and-pkgconfig-behaviour.patch 0002-Fix-an-error-in-xmlCleanupParser.patch
[Desktop-packages] [Bug 1375637] Re: Premature end of data in tag file line 247651 with libxml2
Hi Sebastien, The problem is I've found no consistent trigger for the bug. I have 225 packages in my repository, built out for two different branches and two oses (so 225x4). createrepo just randomly corrupts when executing 'createrepo --update .' when adding a new source/binary rpm pair. It is trivially solvable (rm -rf repodata .repodata; createrepo .), but having to briefly have a 100% repo outage is the problem. I've not seen anything specific about the packages that would cause this to occur. It seems to be some type of race condition during the update process, because of it complaining about " I/O error : No such file or directory". -- You received this bug notification because you are a member of Desktop Packages, which is subscribed to libxml2 in Ubuntu. https://bugs.launchpad.net/bugs/1375637 Title: Premature end of data in tag file line 247651 with libxml2 Status in libxml2 package in Ubuntu: Confirmed Bug description: Hello, I'm getting the following behaviour of createrepo on Ubuntu 14.04.1 LTS with libxml2=2.9.1+dfsg1-3ubuntu4.3(trusty-updates/main) and libxml2=2.9.1+dfsg1-3ubuntu4(trusty/main). createrepo -g /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/comps.xml \ -o /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ I/O error : No such file or directory (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag package line 246828 (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag filelists line 2 Spawning worker 0 with 54 pkgs Spawning worker 1 with 54 pkgs Spawning worker 2 with 54 pkgs Spawning worker 3 with 54 pkgs Spawning worker 4 with 54 pkgs Spawning worker 5 with 54 pkgs Spawning worker 6 with 54 pkgs Spawning worker 7 with 54 pkgs Spawning worker 8 with 54 pkgs Spawning worker 9 with 54 pkgs Spawning worker 10 with 53 pkgs Spawning worker 11 with 53 pkgs Spawning worker 12 with 53 pkgs Spawning worker 13 with 53 pkgs Spawning worker 14 with 53 pkgs Spawning worker 15 with 53 pkgs Spawning worker 16 with 53 pkgs Spawning worker 17 with 53 pkgs Spawning worker 18 with 53 pkgs Spawning worker 19 with 53 pkgs Spawning worker 20 with 53 pkgs Spawning worker 21 with 53 pkgs Spawning worker 22 with 53 pkgs Spawning worker 23 with 53 pkgs Workers Finished Saving Primary metadata Saving file lists metadata Saving other metadata Generating sqlite DBs Traceback (most recent call last): File "/usr/share/createrepo/genpkgmetadata.py", line 308, in main(sys.argv[1:]) File "/usr/share/createrepo/genpkgmetadata.py", line 280, in main mdgen.doRepoMetadata() File "/usr/lib/python2.7/dist-packages/createrepo/__init__.py", line 999, in doRepoMetadata rp.getFilelists(complete_path, csum) File "/usr/lib/python2.7/dist-packages/sqlitecachec.py", line 55, in getFilelists self.repoid)) TypeError: Parsing filelists.xml error: Premature end of data in tag file line 247651 Problem fixes by installing libxml2=2.9.1+dfsg1 from debian sid. Comparing patchsets in debian package sources between 2.9.1+dfsg1 and 2.9.1+dfsg1-3ubuntu4.3 I see in debian package much more patches, I suppose one of them helps in my problem: 2.9.1+dfsg1-3ubuntu4.3: 0001-modify-xml2-config-and-pkgconfig-behaviour.patch 0002-Fix-an-error-in-xmlCleanupParser.patch 0003-Fix-missing-break-on-last-function-for-attributes.patch 0004-xmllint-memory-should-fail-on-empty-files.patch 0005-properly-quote-the-namespace-uris-written-out-during.patch 0006-Fix-a-parsing-bug-on-non-ascii-element-and-CR-LF-usa.patch 0006-fix-python-multiarch-includes.patch 0007-Fix-XPath-optimization-with-predicates.patch CVE-2014-0191.patch lp1321869.patch xmllint_pretty.patch 2.9.1+dfsg1: 0001-modify-xml2-config-and-pkgconfig-behaviour.patch 0002-fix-python-multiarch-includes.patch 0003-Fix-an-error-in-xmlCleanupParser.patch 0004-Fix-missing-break-on-last-function-for-attributes.patch 0005-xmllint-memory-should-fail-on-empty-files.patch 0006-properly-quote-the-namespace-uris-written-out-during.patch 0007-Fix-a-parsing-bug-on-non-ascii-element-and-CR-LF-usa.patch 0008-missing-else-in-xlink.c.patch 0009-Catch-malloc-error-and-exit-accordingly.patch 0010-Fix-handling-of-mmap-errors.patch 0011-Avoid-crash-if-allocation-fails.patch
[Desktop-packages] [Bug 1375637] Re: Premature end of data in tag file line 247651 with libxml2
When will this be fixed? I'm currently using a single server to host both debs and rpms, and this bug triggers fairly frequently, causing me to have to take down my repo and regenerate it. -- You received this bug notification because you are a member of Desktop Packages, which is subscribed to libxml2 in Ubuntu. https://bugs.launchpad.net/bugs/1375637 Title: Premature end of data in tag file line 247651 with libxml2 Status in libxml2 package in Ubuntu: Confirmed Bug description: Hello, I'm getting the following behaviour of createrepo on Ubuntu 14.04.1 LTS with libxml2=2.9.1+dfsg1-3ubuntu4.3(trusty-updates/main) and libxml2=2.9.1+dfsg1-3ubuntu4(trusty/main). createrepo -g /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/comps.xml \ -o /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ I/O error : No such file or directory (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag package line 246828 (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag filelists line 2 Spawning worker 0 with 54 pkgs Spawning worker 1 with 54 pkgs Spawning worker 2 with 54 pkgs Spawning worker 3 with 54 pkgs Spawning worker 4 with 54 pkgs Spawning worker 5 with 54 pkgs Spawning worker 6 with 54 pkgs Spawning worker 7 with 54 pkgs Spawning worker 8 with 54 pkgs Spawning worker 9 with 54 pkgs Spawning worker 10 with 53 pkgs Spawning worker 11 with 53 pkgs Spawning worker 12 with 53 pkgs Spawning worker 13 with 53 pkgs Spawning worker 14 with 53 pkgs Spawning worker 15 with 53 pkgs Spawning worker 16 with 53 pkgs Spawning worker 17 with 53 pkgs Spawning worker 18 with 53 pkgs Spawning worker 19 with 53 pkgs Spawning worker 20 with 53 pkgs Spawning worker 21 with 53 pkgs Spawning worker 22 with 53 pkgs Spawning worker 23 with 53 pkgs Workers Finished Saving Primary metadata Saving file lists metadata Saving other metadata Generating sqlite DBs Traceback (most recent call last): File "/usr/share/createrepo/genpkgmetadata.py", line 308, in main(sys.argv[1:]) File "/usr/share/createrepo/genpkgmetadata.py", line 280, in main mdgen.doRepoMetadata() File "/usr/lib/python2.7/dist-packages/createrepo/__init__.py", line 999, in doRepoMetadata rp.getFilelists(complete_path, csum) File "/usr/lib/python2.7/dist-packages/sqlitecachec.py", line 55, in getFilelists self.repoid)) TypeError: Parsing filelists.xml error: Premature end of data in tag file line 247651 Problem fixes by installing libxml2=2.9.1+dfsg1 from debian sid. Comparing patchsets in debian package sources between 2.9.1+dfsg1 and 2.9.1+dfsg1-3ubuntu4.3 I see in debian package much more patches, I suppose one of them helps in my problem: 2.9.1+dfsg1-3ubuntu4.3: 0001-modify-xml2-config-and-pkgconfig-behaviour.patch 0002-Fix-an-error-in-xmlCleanupParser.patch 0003-Fix-missing-break-on-last-function-for-attributes.patch 0004-xmllint-memory-should-fail-on-empty-files.patch 0005-properly-quote-the-namespace-uris-written-out-during.patch 0006-Fix-a-parsing-bug-on-non-ascii-element-and-CR-LF-usa.patch 0006-fix-python-multiarch-includes.patch 0007-Fix-XPath-optimization-with-predicates.patch CVE-2014-0191.patch lp1321869.patch xmllint_pretty.patch 2.9.1+dfsg1: 0001-modify-xml2-config-and-pkgconfig-behaviour.patch 0002-fix-python-multiarch-includes.patch 0003-Fix-an-error-in-xmlCleanupParser.patch 0004-Fix-missing-break-on-last-function-for-attributes.patch 0005-xmllint-memory-should-fail-on-empty-files.patch 0006-properly-quote-the-namespace-uris-written-out-during.patch 0007-Fix-a-parsing-bug-on-non-ascii-element-and-CR-LF-usa.patch 0008-missing-else-in-xlink.c.patch 0009-Catch-malloc-error-and-exit-accordingly.patch 0010-Fix-handling-of-mmap-errors.patch 0011-Avoid-crash-if-allocation-fails.patch 0012-Fix-a-possible-NULL-dereference.patch 0013-Clear-up-a-potential-NULL-dereference.patch 0014-Fix-XPath-optimization-with-predicates.patch 0015-xmllint-pretty-crashed-without-following-numeric-arg.patch 0016-Fix-potential-NULL-pointer-dereferences-in-regexp-co.patch 0017-Fix-a-potential-NULL-dereference-in-tree-code.patch 0018-Fix-pointer-dereferenced-before-null-check.patch 0019-Fix-a-bug-loading-some-compressed-files.patch
[Desktop-packages] [Bug 1375637] Re: Premature end of data in tag file line 247651 with libxml2
Thank you for your bug report. Do you have a testcase you could add to the bug? That would be make easier to test/find out the fix to backport Aron, you seem to co-maintain libxml in Debian, do you have any idea about the issue? ** Changed in: libxml2 (Ubuntu) Importance: Undecided => High ** Changed in: libxml2 (Ubuntu) Assignee: (unassigned) => Aron Xu (happyaron) -- You received this bug notification because you are a member of Desktop Packages, which is subscribed to libxml2 in Ubuntu. https://bugs.launchpad.net/bugs/1375637 Title: Premature end of data in tag file line 247651 with libxml2 Status in libxml2 package in Ubuntu: Confirmed Bug description: Hello, I'm getting the following behaviour of createrepo on Ubuntu 14.04.1 LTS with libxml2=2.9.1+dfsg1-3ubuntu4.3(trusty-updates/main) and libxml2=2.9.1+dfsg1-3ubuntu4(trusty/main). createrepo -g /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/comps.xml \ -o /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ I/O error : No such file or directory (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag package line 246828 (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag filelists line 2 Spawning worker 0 with 54 pkgs Spawning worker 1 with 54 pkgs Spawning worker 2 with 54 pkgs Spawning worker 3 with 54 pkgs Spawning worker 4 with 54 pkgs Spawning worker 5 with 54 pkgs Spawning worker 6 with 54 pkgs Spawning worker 7 with 54 pkgs Spawning worker 8 with 54 pkgs Spawning worker 9 with 54 pkgs Spawning worker 10 with 53 pkgs Spawning worker 11 with 53 pkgs Spawning worker 12 with 53 pkgs Spawning worker 13 with 53 pkgs Spawning worker 14 with 53 pkgs Spawning worker 15 with 53 pkgs Spawning worker 16 with 53 pkgs Spawning worker 17 with 53 pkgs Spawning worker 18 with 53 pkgs Spawning worker 19 with 53 pkgs Spawning worker 20 with 53 pkgs Spawning worker 21 with 53 pkgs Spawning worker 22 with 53 pkgs Spawning worker 23 with 53 pkgs Workers Finished Saving Primary metadata Saving file lists metadata Saving other metadata Generating sqlite DBs Traceback (most recent call last): File "/usr/share/createrepo/genpkgmetadata.py", line 308, in main(sys.argv[1:]) File "/usr/share/createrepo/genpkgmetadata.py", line 280, in main mdgen.doRepoMetadata() File "/usr/lib/python2.7/dist-packages/createrepo/__init__.py", line 999, in doRepoMetadata rp.getFilelists(complete_path, csum) File "/usr/lib/python2.7/dist-packages/sqlitecachec.py", line 55, in getFilelists self.repoid)) TypeError: Parsing filelists.xml error: Premature end of data in tag file line 247651 Problem fixes by installing libxml2=2.9.1+dfsg1 from debian sid. Comparing patchsets in debian package sources between 2.9.1+dfsg1 and 2.9.1+dfsg1-3ubuntu4.3 I see in debian package much more patches, I suppose one of them helps in my problem: 2.9.1+dfsg1-3ubuntu4.3: 0001-modify-xml2-config-and-pkgconfig-behaviour.patch 0002-Fix-an-error-in-xmlCleanupParser.patch 0003-Fix-missing-break-on-last-function-for-attributes.patch 0004-xmllint-memory-should-fail-on-empty-files.patch 0005-properly-quote-the-namespace-uris-written-out-during.patch 0006-Fix-a-parsing-bug-on-non-ascii-element-and-CR-LF-usa.patch 0006-fix-python-multiarch-includes.patch 0007-Fix-XPath-optimization-with-predicates.patch CVE-2014-0191.patch lp1321869.patch xmllint_pretty.patch 2.9.1+dfsg1: 0001-modify-xml2-config-and-pkgconfig-behaviour.patch 0002-fix-python-multiarch-includes.patch 0003-Fix-an-error-in-xmlCleanupParser.patch 0004-Fix-missing-break-on-last-function-for-attributes.patch 0005-xmllint-memory-should-fail-on-empty-files.patch 0006-properly-quote-the-namespace-uris-written-out-during.patch 0007-Fix-a-parsing-bug-on-non-ascii-element-and-CR-LF-usa.patch 0008-missing-else-in-xlink.c.patch 0009-Catch-malloc-error-and-exit-accordingly.patch 0010-Fix-handling-of-mmap-errors.patch 0011-Avoid-crash-if-allocation-fails.patch 0012-Fix-a-possible-NULL-dereference.patch 0013-Clear-up-a-potential-NULL-dereference.patch 0014-Fix-XPath-optimization-with-predicates.patch 0015-xmllint-pretty-crashed-without-following-numeric-arg.patch 0016-Fix-potential-NULL-pointer-dereferences-in-regexp-co.patch
[Desktop-packages] [Bug 1375637] Re: Premature end of data in tag file line 247651 with libxml2
Status changed to 'Confirmed' because the bug affects multiple users. ** Changed in: libxml2 (Ubuntu) Status: New = Confirmed -- You received this bug notification because you are a member of Desktop Packages, which is subscribed to libxml2 in Ubuntu. https://bugs.launchpad.net/bugs/1375637 Title: Premature end of data in tag file line 247651 with libxml2 Status in “libxml2” package in Ubuntu: Confirmed Bug description: Hello, I'm getting the following behaviour of createrepo on Ubuntu 14.04.1 LTS with libxml2=2.9.1+dfsg1-3ubuntu4.3(trusty-updates/main) and libxml2=2.9.1+dfsg1-3ubuntu4(trusty/main). createrepo -g /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/comps.xml \ -o /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ I/O error : No such file or directory (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag package line 246828 (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag filelists line 2 Spawning worker 0 with 54 pkgs Spawning worker 1 with 54 pkgs Spawning worker 2 with 54 pkgs Spawning worker 3 with 54 pkgs Spawning worker 4 with 54 pkgs Spawning worker 5 with 54 pkgs Spawning worker 6 with 54 pkgs Spawning worker 7 with 54 pkgs Spawning worker 8 with 54 pkgs Spawning worker 9 with 54 pkgs Spawning worker 10 with 53 pkgs Spawning worker 11 with 53 pkgs Spawning worker 12 with 53 pkgs Spawning worker 13 with 53 pkgs Spawning worker 14 with 53 pkgs Spawning worker 15 with 53 pkgs Spawning worker 16 with 53 pkgs Spawning worker 17 with 53 pkgs Spawning worker 18 with 53 pkgs Spawning worker 19 with 53 pkgs Spawning worker 20 with 53 pkgs Spawning worker 21 with 53 pkgs Spawning worker 22 with 53 pkgs Spawning worker 23 with 53 pkgs Workers Finished Saving Primary metadata Saving file lists metadata Saving other metadata Generating sqlite DBs Traceback (most recent call last): File /usr/share/createrepo/genpkgmetadata.py, line 308, in module main(sys.argv[1:]) File /usr/share/createrepo/genpkgmetadata.py, line 280, in main mdgen.doRepoMetadata() File /usr/lib/python2.7/dist-packages/createrepo/__init__.py, line 999, in doRepoMetadata rp.getFilelists(complete_path, csum) File /usr/lib/python2.7/dist-packages/sqlitecachec.py, line 55, in getFilelists self.repoid)) TypeError: Parsing filelists.xml error: Premature end of data in tag file line 247651 Problem fixes by installing libxml2=2.9.1+dfsg1 from debian sid. Comparing patchsets in debian package sources between 2.9.1+dfsg1 and 2.9.1+dfsg1-3ubuntu4.3 I see in debian package much more patches, I suppose one of them helps in my problem: 2.9.1+dfsg1-3ubuntu4.3: 0001-modify-xml2-config-and-pkgconfig-behaviour.patch 0002-Fix-an-error-in-xmlCleanupParser.patch 0003-Fix-missing-break-on-last-function-for-attributes.patch 0004-xmllint-memory-should-fail-on-empty-files.patch 0005-properly-quote-the-namespace-uris-written-out-during.patch 0006-Fix-a-parsing-bug-on-non-ascii-element-and-CR-LF-usa.patch 0006-fix-python-multiarch-includes.patch 0007-Fix-XPath-optimization-with-predicates.patch CVE-2014-0191.patch lp1321869.patch xmllint_pretty.patch 2.9.1+dfsg1: 0001-modify-xml2-config-and-pkgconfig-behaviour.patch 0002-fix-python-multiarch-includes.patch 0003-Fix-an-error-in-xmlCleanupParser.patch 0004-Fix-missing-break-on-last-function-for-attributes.patch 0005-xmllint-memory-should-fail-on-empty-files.patch 0006-properly-quote-the-namespace-uris-written-out-during.patch 0007-Fix-a-parsing-bug-on-non-ascii-element-and-CR-LF-usa.patch 0008-missing-else-in-xlink.c.patch 0009-Catch-malloc-error-and-exit-accordingly.patch 0010-Fix-handling-of-mmap-errors.patch 0011-Avoid-crash-if-allocation-fails.patch 0012-Fix-a-possible-NULL-dereference.patch 0013-Clear-up-a-potential-NULL-dereference.patch 0014-Fix-XPath-optimization-with-predicates.patch 0015-xmllint-pretty-crashed-without-following-numeric-arg.patch 0016-Fix-potential-NULL-pointer-dereferences-in-regexp-co.patch 0017-Fix-a-potential-NULL-dereference-in-tree-code.patch 0018-Fix-pointer-dereferenced-before-null-check.patch 0019-Fix-a-bug-loading-some-compressed-files.patch 0020-Avoid-a-possibility-of-dangling-encoding-handler.patch
[Desktop-packages] [Bug 1375637] Re: Premature end of data in tag file line 247651 with libxml2
** Summary changed: - Premature end of data in tag file line 247651 will libxml2 + Premature end of data in tag file line 247651 with libxml2 -- You received this bug notification because you are a member of Desktop Packages, which is subscribed to libxml2 in Ubuntu. https://bugs.launchpad.net/bugs/1375637 Title: Premature end of data in tag file line 247651 with libxml2 Status in “libxml2” package in Ubuntu: New Bug description: Hello, I'm getting the following behaviour of createrepo on Ubuntu 14.04.1 LTS with libxml2=2.9.1+dfsg1-3ubuntu4.3(trusty-updates/main) and libxml2=2.9.1+dfsg1-3ubuntu4(trusty/main). createrepo -g /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/comps.xml \ -o /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ /home/jenkins/workspace/tmp/fuel_5_1_mirror/local_mirror/centos/os/x86_64/ I/O error : No such file or directory (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag package line 246828 (process:29830): GLib-WARNING **: GError set over the top of a previous GError or uninitialized memory. This indicates a bug in someone's code. You must ensure an error is NULL before it's set. The overwriting error message was: Parsing filelists.xml error: Premature end of data in tag filelists line 2 Spawning worker 0 with 54 pkgs Spawning worker 1 with 54 pkgs Spawning worker 2 with 54 pkgs Spawning worker 3 with 54 pkgs Spawning worker 4 with 54 pkgs Spawning worker 5 with 54 pkgs Spawning worker 6 with 54 pkgs Spawning worker 7 with 54 pkgs Spawning worker 8 with 54 pkgs Spawning worker 9 with 54 pkgs Spawning worker 10 with 53 pkgs Spawning worker 11 with 53 pkgs Spawning worker 12 with 53 pkgs Spawning worker 13 with 53 pkgs Spawning worker 14 with 53 pkgs Spawning worker 15 with 53 pkgs Spawning worker 16 with 53 pkgs Spawning worker 17 with 53 pkgs Spawning worker 18 with 53 pkgs Spawning worker 19 with 53 pkgs Spawning worker 20 with 53 pkgs Spawning worker 21 with 53 pkgs Spawning worker 22 with 53 pkgs Spawning worker 23 with 53 pkgs Workers Finished Saving Primary metadata Saving file lists metadata Saving other metadata Generating sqlite DBs Traceback (most recent call last): File /usr/share/createrepo/genpkgmetadata.py, line 308, in module main(sys.argv[1:]) File /usr/share/createrepo/genpkgmetadata.py, line 280, in main mdgen.doRepoMetadata() File /usr/lib/python2.7/dist-packages/createrepo/__init__.py, line 999, in doRepoMetadata rp.getFilelists(complete_path, csum) File /usr/lib/python2.7/dist-packages/sqlitecachec.py, line 55, in getFilelists self.repoid)) TypeError: Parsing filelists.xml error: Premature end of data in tag file line 247651 Problem fixes by installing libxml2=2.9.1+dfsg1 from debian sid. Comparing patchsets in debian package sources between 2.9.1+dfsg1 and 2.9.1+dfsg1-3ubuntu4.3 I see in debian package much more patches, I suppose one of them helps in my problem: 2.9.1+dfsg1-3ubuntu4.3: 0001-modify-xml2-config-and-pkgconfig-behaviour.patch 0002-Fix-an-error-in-xmlCleanupParser.patch 0003-Fix-missing-break-on-last-function-for-attributes.patch 0004-xmllint-memory-should-fail-on-empty-files.patch 0005-properly-quote-the-namespace-uris-written-out-during.patch 0006-Fix-a-parsing-bug-on-non-ascii-element-and-CR-LF-usa.patch 0006-fix-python-multiarch-includes.patch 0007-Fix-XPath-optimization-with-predicates.patch CVE-2014-0191.patch lp1321869.patch xmllint_pretty.patch 2.9.1+dfsg1: 0001-modify-xml2-config-and-pkgconfig-behaviour.patch 0002-fix-python-multiarch-includes.patch 0003-Fix-an-error-in-xmlCleanupParser.patch 0004-Fix-missing-break-on-last-function-for-attributes.patch 0005-xmllint-memory-should-fail-on-empty-files.patch 0006-properly-quote-the-namespace-uris-written-out-during.patch 0007-Fix-a-parsing-bug-on-non-ascii-element-and-CR-LF-usa.patch 0008-missing-else-in-xlink.c.patch 0009-Catch-malloc-error-and-exit-accordingly.patch 0010-Fix-handling-of-mmap-errors.patch 0011-Avoid-crash-if-allocation-fails.patch 0012-Fix-a-possible-NULL-dereference.patch 0013-Clear-up-a-potential-NULL-dereference.patch 0014-Fix-XPath-optimization-with-predicates.patch 0015-xmllint-pretty-crashed-without-following-numeric-arg.patch 0016-Fix-potential-NULL-pointer-dereferences-in-regexp-co.patch 0017-Fix-a-potential-NULL-dereference-in-tree-code.patch 0018-Fix-pointer-dereferenced-before-null-check.patch 0019-Fix-a-bug-loading-some-compressed-files.patch 0020-Avoid-a-possibility-of-dangling-encoding-handler.patch
