How to find sub-entities using ctakes
Hi I'm new to cTAKES. Right now I can use ctakes to extract entities such as disorders, findings, anatomy. However the data in UMLS are hierarchically structured. Is it possible to retrieve . For example when you parse "cancer" you will also get "leukemia" and "malignant tumor"? Yangrui Sent from my iPhone
Combining Knowledge- and Data-driven Methods for De-identification of Clinical Narratives
Hi Azad, This is awesome news. Thanks for adding in the code that was referenced by the paper. I'll create a Jira to track we need to port it over to UIMA/Ruta. In the meantime, the link is at: http://sourceforge.net/p/clinical-deid/code/ci/master/tree/ for those who may be interested in helping out... --Pei Hello Pei, I hope all is well. I have now uploaded the source code for cDeid (http://sourceforge.net/p/clinical-deid/code/ci/master/tree/) ; I have tried to make the code as portable and modular as possible with some trade-off for performance. This should help with porting the code to cTAKES/UIMA. Once you let the community know I will try to get involved to help with translating JAPE to RUTA, etc. Best, Azad
RE: How to find sub-entities using ctakes
Hi Yangrui, Great question. Right now I don't think that anybody has made an engine for ctakes that will navigate and report using the full umls parent/child (or other) relation web. I think that such a task might be better left to post-processing, and perhaps some industrious soul out there has made a tool that they can share ... ? Sean -Original Message- From: Yangrui Guo [mailto:guoyang...@gmail.com] Sent: Thursday, October 01, 2015 2:44 AM To: dev@ctakes.apache.org Subject: How to find sub-entities using ctakes Hi I'm new to cTAKES. Right now I can use ctakes to extract entities such as disorders, findings, anatomy. However the data in UMLS are hierarchically structured. Is it possible to retrieve . For example when you parse "cancer" you will also get "leukemia" and "malignant tumor"? Yangrui Sent from my iPhone
