Re: Reg : cTakes ubuntu Operating system issue... [EXTERNAL]
Thank you sean, i increased ram size,its working now.. regards, shyam k On Fri, Aug 4, 2017 at 4:46 PM, Finan, Sean < sean.fi...@childrens.harvard.edu> wrote: > Hi Shyam, > > > > Is there any chance that you missed the –Xmx3G in your servlet launch? > > > > Sean > > > > *From:* Ks Sunder [mailto:shyam...@gmail.com] > *Sent:* Friday, August 04, 2017 3:57 AM > *To:* dev@ctakes.apache.org > *Cc:* Finan, Sean > *Subject:* Reg : cTakes ubuntu Operating system issue... [EXTERNAL] > > > > Hi , > > > > I deployed cTakes App in ubuntu operating system server is Apache Tomcat7, > I am getting this error.. > > > > > > Aug 02, 2017 9:50:46 AM org.apache.catalina.core.StandardContext > loadOnStartup > > SEVERE: Servlet [cTakesWebClass] in web application [/WebAppcTakes] threw > load() exception > > java.sql.SQLException: Out of Memory > > at org.hsqldb.jdbc.Util.sqlException(Unknown Source) > > at org.hsqldb.jdbc.jdbcConnection.(Unknown Source) > > at org.hsqldb.jdbcDriver.getConnection(Unknown Source) > > at org.hsqldb.jdbcDriver.connect(Unknown Source) > > at java.sql.DriverManager.getConnection(DriverManager.java:664) > > at java.sql.DriverManager.getConnection(DriverManager.java:247) > > at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory. > getConnection(JdbcConnectionFactory.java:84) > > at org.apache.ctakes.dictionary.lookup2.dictionary. > JdbcRareWordDictionary.(JdbcRareWordDictionary.java:91) > > at org.apache.ctakes.dictionary.lookup2.dictionary. > JdbcRareWordDictionary.(JdbcRareWordDictionary.java:72) > > at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) > > at sun.reflect.NativeConstructorAccessorImpl.newInstance( > NativeConstructorAccessorImpl.java:62) > > at sun.reflect.DelegatingConstructorAccessorImpl.newInstance( > DelegatingConstructorAccessorImpl.java:45) > > at java.lang.reflect.Constructor.newInstance(Constructor.java:423) > > at org.apache.ctakes.dictionary.lookup2.dictionary. > DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser. > java:196) > > at org.apache.ctakes.dictionary.lookup2.dictionary. > DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser. > java:156) > > at org.apache.ctakes.dictionary.lookup2.dictionary. > DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser. > java:128) > > at org.apache.ctakes.dictionary.lookup2.ae > <https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=zMeCFie3cPXL_o4C3OKCh17EjkajLQEs3Qvx8_K5SGI&s=jYUeOR4QGzHGm0U_U_VNw2YP-yLNKUE8NV66EZY0jEo&e=> > .AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:116) > > at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. > initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) > > at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. > initialize(PrimitiveAnalysisEngine_impl.java:156) > > at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( > AnalysisEngineFactory_impl.java:94) > > at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( > CompositeResourceFactory_impl.java:62) > > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > > at org.apache.uima.UIMAFramework.produceAnalysisEngine( > UIMAFramework.java:387) > > at org.apache.uima.analysis_engine.asb.impl.ASB_impl. > setup(ASB_impl.java:254) > > at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. > initASB(AggregateAnalysisEngine_impl.java:431) > > at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. > initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > > at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. > initialize(AggregateAnalysisEngine_impl.java:185) > > at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine( > AnalysisEngineFactory.java:711) > > at org.apache.uima.fit.factory.AggregateBuilder.createAggregate( > AggregateBuilder.java:207) > > at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:36) > > at org.apache.catalina.core.StandardWrapper.initServlet( > StandardWrapper.java:1269) > > at org.apache.catalina.core.StandardWrapper.loadServlet( > StandardWrapper.java:1182) > > at org.apache.catalina.core.StandardWrapper.load( > StandardWrapper.java:1072) > > at org.apache.catalina.core.StandardContext.loadOnStartup( > StandardContext.java:5368) > > at org.apache.catalina.core.StandardContext.startI
RE: Reg : cTakes ubuntu Operating system issue... [EXTERNAL]
Hi Shyam, Is there any chance that you missed the –Xmx3G in your servlet launch? Sean From: Ks Sunder [mailto:shyam...@gmail.com] Sent: Friday, August 04, 2017 3:57 AM To: dev@ctakes.apache.org Cc: Finan, Sean Subject: Reg : cTakes ubuntu Operating system issue... [EXTERNAL] Hi , I deployed cTakes App in ubuntu operating system server is Apache Tomcat7, I am getting this error.. Aug 02, 2017 9:50:46 AM org.apache.catalina.core.StandardContext loadOnStartup SEVERE: Servlet [cTakesWebClass] in web application [/WebAppcTakes] threw load() exception java.sql.SQLException: Out of Memory at org.hsqldb.jdbc.Util.sqlException(Unknown Source) at org.hsqldb.jdbc.jdbcConnection.(Unknown Source) at org.hsqldb.jdbcDriver.getConnection(Unknown Source) at org.hsqldb.jdbcDriver.connect(Unknown Source) at java.sql.DriverManager.getConnection(DriverManager.java:664) at java.sql.DriverManager.getConnection(DriverManager.java:247) at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84) at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.(JdbcRareWordDictionary.java:91) at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.(JdbcRareWordDictionary.java:72) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196) at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156) at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128) at org.apache.ctakes.dictionary.lookup2.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=zMeCFie3cPXL_o4C3OKCh17EjkajLQEs3Qvx8_K5SGI&s=jYUeOR4QGzHGm0U_U_VNw2YP-yLNKUE8NV66EZY0jEo&e=>.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:116) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711) at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207) at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:36) at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1269) at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1182) at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1072) at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5368) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5660) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1092) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1984) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java
Reg : cTakes ubuntu Operating system issue...
Hi , I deployed cTakes App in ubuntu operating system server is Apache Tomcat7, I am getting this error.. Aug 02, 2017 9:50:46 AM org.apache.catalina.core.StandardContext loadOnStartup SEVERE: Servlet [cTakesWebClass] in web application [/WebAppcTakes] threw load() exception java.sql.SQLException: Out of Memory at org.hsqldb.jdbc.Util.sqlException(Unknown Source) at org.hsqldb.jdbc.jdbcConnection.(Unknown Source) at org.hsqldb.jdbcDriver.getConnection(Unknown Source) at org.hsqldb.jdbcDriver.connect(Unknown Source) at java.sql.DriverManager.getConnection(DriverManager.java:664) at java.sql.DriverManager.getConnection(DriverManager.java:247) at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory. getConnection(JdbcConnectionFactory.java:84) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.(JdbcRareWordDictionary.java:91) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.(JdbcRareWordDictionary.java:72) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance( NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance( DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser. java:196) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser. java:156) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser. java:128) at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator. initialize(AbstractJCasTermAnnotator.java:116) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initialize(PrimitiveAnalysisEngine_impl.java:156) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine( UIMAFramework.java:387) at org.apache.uima.analysis_engine.asb.impl.ASB_impl. setup(ASB_impl.java:254) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initASB(AggregateAnalysisEngine_impl.java:431) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initialize(AggregateAnalysisEngine_impl.java:185) at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine( AnalysisEngineFactory.java:711) at org.apache.uima.fit.factory.AggregateBuilder.createAggregate( AggregateBuilder.java:207) at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:36) at org.apache.catalina.core.StandardWrapper.initServlet( StandardWrapper.java:1269) at org.apache.catalina.core.StandardWrapper.loadServlet( StandardWrapper.java:1182) at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1072) at org.apache.catalina.core.StandardContext.loadOnStartup( StandardContext.java:5368) at org.apache.catalina.core.StandardContext.startInternal( StandardContext.java:5660) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145) at org.apache.catalina.core.ContainerBase.addChildInternal( ContainerBase.java:899) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1092) at org.apache.catalina.startup.HostConfig$DeployWar.run( HostConfig.java:1984) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker( ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run( ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:748) Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log INFO: ContextListener: contextInitialized() Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log INFO: SessionListener: contextInitialized() Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log INFO: ContextListener: attributeAdded('org.apache.jasper.compiler.TldLocationsCache', 'org.apache.jasper.compiler.TldLocationsCache@1b277e2c') . But in Windows its working fine,please help me on this issue.. regads, shyam k.
Reg : cTakes ubuntu Operating system issue...
Hi , I deployed cTakes App in ubuntu operating system, I am getting this error.. Aug 02, 2017 9:50:46 AM org.apache.catalina.core.StandardContext loadOnStartup SEVERE: Servlet [cTakesWebClass] in web application [/WebAppcTakes] threw load() exception java.sql.SQLException: Out of Memory at org.hsqldb.jdbc.Util.sqlException(Unknown Source) at org.hsqldb.jdbc.jdbcConnection.(Unknown Source) at org.hsqldb.jdbcDriver.getConnection(Unknown Source) at org.hsqldb.jdbcDriver.connect(Unknown Source) at java.sql.DriverManager.getConnection(DriverManager.java:664) at java.sql.DriverManager.getConnection(DriverManager.java:247) at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84) at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.(JdbcRareWordDictionary.java:91) at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.(JdbcRareWordDictionary.java:72) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196) at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156) at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128) at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:116) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711) at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207) at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:36) at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1269) at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1182) at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1072) at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5368) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5660) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1092) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1984) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:748) Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log INFO: ContextListener: contextInitialized() Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log INFO: SessionListener: contextInitialized() Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log INFO: ContextListener: attributeAdded('org.apache.jasper.compiler.TldLocationsCache', 'org.apache.jasper.compiler.TldLocationsCache@1b277e2c') . But in Windows its working fine,please help me on this issue.. regads, shyam k.