Re: [OMPI devel] [OMPI svn] svn:open-mpi r20740

2009-03-05 Thread Rainer Keller
And reverted both r20739 and r20740.

With best regards,
Rainer



On Thursday 05 March 2009 04:25:18 pm Ralph Castain wrote:
> This is what we expressly said NOT to do in Louisville

-- 

Rainer Keller, PhD  Tel: +1 (865) 241-6293
Oak Ridge National Lab  Fax: +1 (865) 241-4811
PO Box 2008 MS 6164   Email: kel...@ornl.gov
Oak Ridge, TN 37831-2008AIM/Skype: rusraink




Re: [OMPI devel] [OMPI svn-full] svn:open-mpi r20739

2009-03-05 Thread Rainer Keller
Hi Jeff,
On Thursday 05 March 2009 04:06:53 pm Jeff Squyres wrote:
> Can you please explain this change?  It seems like a very large code
> change for such a trivial name change.  Why was it necessary to change
> orte_process_info to orte_proc_info and change all these files?
Yes, I know, as the previous patches, this touches a lot of files, as was the 
second one, as we discussed in Louisville.

> It feels like we're getting into "I like this name better than that
> name" kinds of changes...  :-(
That's not what it is supposed to be about ;-)

This patch was to ease the handling within redefinition files and scripts that 
we need to do to handle the transition.

Of course, I can revert the change.

With best regards,
Rainer
-- 

Rainer Keller, PhD  Tel: +1 (865) 241-6293
Oak Ridge National Lab  Fax: +1 (865) 241-4811
PO Box 2008 MS 6164   Email: kel...@ornl.gov
Oak Ridge, TN 37831-2008AIM/Skype: rusraink




Re: [OMPI devel] [OMPI svn] svn:open-mpi r20740

2009-03-05 Thread Ralph Castain

This is what we expressly said NOT to do in Louisville

Please remit this

Ralph


On Mar 5, 2009, at 2:14 PM, rusra...@osl.iu.edu wrote:


Author: rusraink
Date: 2009-03-05 16:14:18 EST (Thu, 05 Mar 2009)
New Revision: 20740
URL: https://svn.open-mpi.org/trac/ompi/changeset/20740

Log:
- Second patch, as discussed in Louisville.

  Replace short macros in orte/util/name_fns.h
  to the actual fct. call.

- Compiles on linux/x86-64


Text files modified:
  trunk/ompi/mca/bml/r2/bml_r2.c | 4
  trunk/ompi/mca/btl/base/btl_base_error.c   | 2
  trunk/ompi/mca/btl/base/btl_base_error.h   | 8
  trunk/ompi/mca/btl/gm/btl_gm_component.c   | 2
  trunk/ompi/mca/btl/gm/btl_gm_proc.c| 6
  trunk/ompi/mca/btl/mx/btl_mx_proc.c| 4
  trunk/ompi/mca/btl/ofud/btl_ofud_proc.c| 4
  trunk/ompi/mca/btl/openib/btl_openib_proc.c| 2
  trunk/ompi/mca/btl/pcie/btl_pcie_proc.c| 2
  trunk/ompi/mca/btl/tcp/btl_tcp_endpoint.c  | 2
  trunk/ompi/mca/btl/udapl/btl_udapl_proc.c  | 4
  trunk/ompi/mca/crcp/bkmrk/crcp_bkmrk_pml.c |   196  

  trunk/ompi/mca/dpm/orte/dpm_orte.c |46  


  trunk/ompi/mca/mpool/base/mpool_base_lookup.c  | 2
  trunk/ompi/mca/mpool/base/mpool_base_tree.c| 4
  trunk/ompi/mca/mpool/rdma/mpool_rdma_module.c  | 2
  trunk/ompi/mca/pml/base/pml_base_select.c  | 8
  trunk/ompi/mca/pubsub/orte/pubsub_orte.c   |12  
+-

  trunk/ompi/tools/ompi-server/ompi-server.c | 4
  trunk/orte/mca/errmgr/base/errmgr_base_fns.c   | 2
  trunk/orte/mca/errmgr/default/errmgr_default.c |16  
+-
  trunk/orte/mca/ess/alps/ess_alps_module.c  |36  
+++---

  trunk/orte/mca/ess/base/ess_base_std_app.c | 4
  trunk/orte/mca/ess/base/ess_base_std_orted.c   | 2
  trunk/orte/mca/ess/bproc/ess_bproc_module.c|28  
++--
  trunk/orte/mca/ess/env/ess_env_module.c|38  
+++---
  trunk/orte/mca/ess/hnp/ess_hnp_module.c|42  

  trunk/orte/mca/ess/lsf/ess_lsf_module.c|34  
+++---
  trunk/orte/mca/ess/singleton/ess_singleton_module.c|34  
+++---

  trunk/orte/mca/ess/slave/ess_slave_module.c| 6
  trunk/orte/mca/ess/slurm/ess_slurm_module.c|40  

  trunk/orte/mca/ess/slurmd/ess_slurmd_module.c  |42  

  trunk/orte/mca/filem/base/filem_base_receive.c |14  
+-
  trunk/orte/mca/filem/rsh/filem_rsh_module.c|52  
+-
  trunk/orte/mca/grpcomm/bad/grpcomm_bad_module.c|46  

  trunk/orte/mca/grpcomm/base/grpcomm_base_allgather.c   |22  
++--
  trunk/orte/mca/grpcomm/base/grpcomm_base_coll.c|32  
+++---
  trunk/orte/mca/grpcomm/base/grpcomm_base_modex.c   |78  
+++---
  trunk/orte/mca/grpcomm/basic/grpcomm_basic_module.c|76  
+++---
  trunk/orte/mca/grpcomm/hier/grpcomm_hier_module.c  |36  
+++---

  trunk/orte/mca/iof/base/base.h | 4
  trunk/orte/mca/iof/base/iof_base_open.c|10  
+-
  trunk/orte/mca/iof/base/iof_base_output.c  |20  
++--
  trunk/orte/mca/iof/hnp/iof_hnp.c   |18  
+-

  trunk/orte/mca/iof/hnp/iof_hnp_component.c | 2
  trunk/orte/mca/iof/hnp/iof_hnp_read.c  |20  
++--
  trunk/orte/mca/iof/hnp/iof_hnp_receive.c   |20  
++--
  trunk/orte/mca/iof/orted/iof_orted.c   |18  
+-
  trunk/orte/mca/iof/orted/iof_orted_read.c  |10  
+-
  trunk/orte/mca/iof/orted/iof_orted_receive.c   |14  
+-

  trunk/orte/mca/iof/tool/iof_tool.c | 8
  trunk/orte/mca/iof/tool/iof_tool_receive.c |12  
+-

  trunk/orte/mca/notifier/syslog/notifier_syslog_module.c| 4
  trunk/orte/mca/odls/base/odls_base_default_fns.c   |   148  
+++---

  trunk/orte/mca/odls/base/odls_base_state.c | 4
  trunk/orte/mca/odls/bproc/odls_bproc.c | 4
  trunk/orte/mca/odls/default/odls_default_module.c  |10  
+-

  trunk/orte/mca/odls/process/odls_process_module.c  | 4
  trunk/orte/mca/oob/tcp/oob_tcp.c   |46  

  trunk/orte/mca/oob/tcp/oob_tcp_msg.c   |26  
++--
  trunk/orte/mca/oob/tcp/oob_tcp_peer.c

Re: [OMPI devel] [OMPI svn-full] svn:open-mpi r20739

2009-03-05 Thread Jeff Squyres

Rainer --

Can you please explain this change?  It seems like a very large code  
change for such a trivial name change.  Why was it necessary to change  
orte_process_info to orte_proc_info and change all these files?


It feels like we're getting into "I like this name better than that  
name" kinds of changes...  :-(



On Mar 5, 2009, at 3:36 PM,  wrote:


Author: rusraink
Date: 2009-03-05 15:36:44 EST (Thu, 05 Mar 2009)
New Revision: 20739
URL: https://svn.open-mpi.org/trac/ompi/changeset/20739

Log:
 - First of two or three patches, in orte/util/proc_info.h:
   Adapt orte_process_info to orte_proc_info, and
   change orte_proc_info() to orte_proc_info_init().
 - Compiled on linux-x86-64
 - Discussed with Ralph


Text files modified:
   trunk/ompi/attribute/ 
attribute_predefined.c | 4
   trunk/ompi/errhandler/ 
errhandler_predefined.c   | 4
   trunk/ompi/mca/btl/base/ 
btl_base_error.c| 2
   trunk/ompi/mca/btl/base/ 
btl_base_error.h|14 ++--
   trunk/ompi/mca/btl/elan/ 
btl_elan.c  | 2
   trunk/ompi/mca/btl/openib/ 
btl_openib.c  | 4
   trunk/ompi/mca/btl/openib/ 
btl_openib_async.c| 4
   trunk/ompi/mca/btl/openib/ 
btl_openib_component.c|56 +++ 
---
   trunk/ompi/mca/btl/openib/ 
btl_openib_endpoint.c | 2
   trunk/ompi/mca/btl/openib/ 
btl_openib_mca.c  | 6 +-
   trunk/ompi/mca/btl/openib/ 
btl_openib_xrc.c  | 2
   trunk/ompi/mca/btl/openib/connect/ 
btl_openib_connect_base.c | 6 +-
   trunk/ompi/mca/btl/openib/connect/ 
btl_openib_connect_ibcm.c |10 ++--
   trunk/ompi/mca/btl/openib/connect/ 
btl_openib_connect_oob.c  | 2
   trunk/ompi/mca/btl/openib/connect/ 
btl_openib_connect_rdmacm.c   |10 ++--
   trunk/ompi/mca/btl/openib/connect/ 
btl_openib_connect_xoob.c | 2
   trunk/ompi/mca/btl/sm/ 
btl_sm.c  |10 ++--
   trunk/ompi/mca/btl/sm/ 
btl_sm_component.c| 2
   trunk/ompi/mca/btl/udapl/ 
btl_udapl.c| 6 +-
   trunk/ompi/mca/btl/udapl/ 
btl_udapl_component.c  | 2
   trunk/ompi/mca/btl/udapl/ 
btl_udapl_proc.c   | 4
   trunk/ompi/mca/coll/sm/ 
coll_sm_module.c | 4
   trunk/ompi/mca/coll/sm2/ 
coll_sm2_module.c   | 8 +-
   trunk/ompi/mca/coll/sync/ 
coll_sync_module.c | 2
   trunk/ompi/mca/crcp/bkmrk/ 
crcp_bkmrk_pml.c  | 4
   trunk/ompi/mca/dpm/orte/ 
dpm_orte.c  | 6 +-
   trunk/ompi/mca/mpool/base/ 
mpool_base_lookup.c   | 2
   trunk/ompi/mca/mpool/base/ 
mpool_base_tree.c | 8 +-
   trunk/ompi/mca/mpool/sm/ 
mpool_sm_component.c| 4
   trunk/ompi/mca/mpool/sm/ 
mpool_sm_module.c   | 4
   trunk/ompi/mca/pml/v/mca/vprotocol/pessimist/ 
vprotocol_pessimist_sender_based.c | 2
   trunk/ompi/proc/ 
proc.c  | 
22 
   trunk/ompi/runtime/ 
ompi_mpi_abort.c | 2
   trunk/ompi/runtime/ 
ompi_mpi_init.c  | 6  
+-
   trunk/ompi/tools/ompi_info/ 
components.cc| 4
   trunk/orte/mca/errmgr/default/ 
errmgr_default_component.c| 2
   trunk/orte/mca/ess/alps/ 
ess_alps_module.c   |12 ++--
   trunk/orte/mca/ess/base/ 
ess_base_get.c  | 2
   trunk/orte/mca/ess/base/ 
ess_base_std_app.c  |14 ++--
   trunk/orte/mca/ess/base/ 
ess_base_std_orted.c|10 ++--
   trunk/orte/mca/ess/base/ 
ess_base_std_tool.c | 8 +-
   trunk/orte/mca/ess/bproc/ 
ess_bproc_module.c |16 +++---
   trunk/orte/mca/ess/cnos/ 
ess_cnos_module.c   | 4
   trunk/orte/mca/ess/env/ 
ess_env_component.c  | 2
   trunk/orte/mca/ess/env/ 

Re: [OMPI devel] trunk problem for large-SMP startup?

2009-03-05 Thread Eugene Loh

Ralph Castain wrote:

I just ran a 64ppn job without problem. Couple of possibilities come  
to mind:


1. you might have some stale lib around - try blowing things away and  
rebuilding


2. there may be a problem in your specific situation. Can you provide  
some info on what you are doing (e.g., what environment)?


I think it was indeed something in the trunk.  Rolf vandevaart had the 
same problem.  But, I think it's resolved:


(long ago) works
...
20655 broken
20669 broken
20687 works
20728 works
20738 works

So, something broke awhile back and got fixed between 20687 and 20728.  
Okay, I'm back in business and will charge off into the next concrete wall.


Re: [OMPI devel] VT compile error: Fwd: [ofa-general] OFED 1.4.1 (rc1) is available

2009-03-05 Thread Pavel Shamis (Pasha)
Adding pointer to OFED bugzilla ticket for more information: 
https://bugs.openfabrics.org/show_bug.cgi?id=1537


Jeff Squyres wrote:

VT guys --

It looks like we still have a compile bug in OMPI 1.3.1rc4...  See below.

Do you think you can get a fix ASAP for OMPI 1.3.1final?


Begin forwarded message:


*From: *"PN" >
*Date: *March 5, 2009 12:51:28 AM EST
*To: *"Tziporet Koren" >
*Cc: *>, 
>

*Subject:** Re: [ofa-general] OFED 1.4.1 is available*

HI,

I have a build error of OFED-1.4.1-rc1 under CentOS 5.2:

.
Build openmpi_gcc RPM
Running  rpmbuild --rebuild  --define '_topdir /var/tmp/OFED_topdir' 
--define 'dist %{nil}' --target x86_64 --define '_name openmpi_gcc' 
--define 'mpi_selector /usr/bin/mpi-selector' --define 
'use_mpi_selector 1' --define 'install_shell_scripts 1' --define 
'shell_scripts_basename mpivars' --define '_usr /usr' --define 'ofed 
0' --define '_prefix /usr/mpi/gcc/openmpi-1.3.1rc4' --define 
'_defaultdocdir /usr/mpi/gcc/openmpi-1.3.1rc4' --define '_mandir 
%{_prefix}/share/man' --define 'mflags -j 4' --define 
'configure_options   --with-openib=/usr 
--with-openib-libdir=/usr/lib64  CC=gcc CXX=g++ F77=gfortran 
FC=gfortran --enable-mpirun-prefix-by-default' --define 
'use_default_rpm_opt_flags 1' 
/opt/software/packages/ofed/OFED-1.4.1-rc1/OFED-1.4.1-rc1/SRPMS/openmpi-1.3.1rc4-1.src.rpm

Failed to build openmpi RPM
See /tmp/OFED.28377.logs/openmpi.rpmbuild.log


In /tmp/OFED.28377.logs/openmpi.rpmbuild.log:
.
gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib 
-I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE 
-DBINDIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/bin\" 
-DDATADIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/share\" -DRFG  -DVT_MEMHOOK 
-DVT_IOWRAP  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions 
-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT 
vt_iowrap_helper.o -MD -MP -MF .deps/vt_iowrap_helper.Tpo -c -o 
vt_iowrap_helper.o vt_iowrap_helper.c

mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib 
-I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE 
-DBINDIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/bin\" 
-DDATADIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/share\" -DRFG  -DVT_MEMHOOK 
-DVT_IOWRAP  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions 
-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT 
rfg_regions.o -MD -MP -MF .deps/rfg_regions.Tpo -c -o rfg_regions.o 
rfg_regions.c
vt_iowrap.c:1242: error: expected declaration specifiers or '...' 
before numeric constant

vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk'
mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po
make[5]: *** [vt_iowrap.o] Error 1
make[5]: *** Waiting for unfinished jobs
mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po
mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po
make[5]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt/vtlib'

make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt'

make[3]: *** [all] Error 2
make[3]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt'

make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt'

make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi'

make: *** [all-recursive] Error 1
error: Bad exit status from /var/tmp/rpm-tmp.40739 (%build)


RPM build errors:
user jsquyres does not exist - using root
group eng10 does not exist - using root
user jsquyres does not exist - using root
group eng10 does not exist - using root
Bad exit status from /var/tmp/rpm-tmp.40739 (%build)


The error seems similar to 
http://www.open-mpi.org/community/lists/devel/2009/01/5230.php


Regards,
PN


2009/3/5 Tziporet Koren >


Hi,

OFED-1.4.1-rc1 release is available on

_http://www.openfabrics.org/downloads/OFED/ofed-1.4.1/OFED-1.4.1-rc1.tgz_


To get BUILD_ID run ofed_info

Please report any issues in bugzilla
_https://bugs.openfabrics.org/_ for OFED 1.4.1

Vladimir & Tziporet




Release information:

--

Linux Operating Systems:

   - RedHat EL4 up4:  2.6.9-42.ELsmp  *

   - RedHat EL4 up5:  2.6.9-55.ELsmp

   - RedHat EL4 up6:  2.6.9-67.ELsmp

   - RedHat EL4 up7:2.6.9-78.ELsmp

   - RedHat EL5:2.6.18-8.el5

   - RedHat EL5 up1:  2.6.18-53.el5

   - RedHat EL5 up2:  

Re: [OMPI devel] 1.3.1rc3 was borked; 1.3.1rc4 is out

2009-03-05 Thread Pavel Shamis (Pasha)
I tried to build latest OFED with new ompi rc4, but is looks that vtune 
code is broken again ?


gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib 
-I../extlib/otf/otflib -D_GNU_SOURCE 
-DBINDIR=\"/usr/local/mpi/gcc/openmpi-1.3.1rc4/bin\" 
-DDATADIR=\"/usr/local/mpi/gcc/openmpi-1.3.1rc4/share\" -DRFG  
-DVT_MEMHOOK -DVT_IOWRAP  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 
-fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 
-march=i386 -mtune=generic -fasynchronous-unwind-tables -MT 
vt_iowrap_helper.o -MD -MP -MF .deps/vt_iowrap_helper.Tpo -c -o 
vt_iowrap_helper.o vt_iowrap_helper.c
gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib 
-I../extlib/otf/otflib -D_GNU_SOURCE 
-DBINDIR=\"/usr/local/mpi/gcc/openmpi-1.3.1rc4/bin\" 
-DDATADIR=\"/usr/local/mpi/gcc/openmpi-1.3.1rc4/share\" -DRFG  
-DVT_MEMHOOK -DVT_IOWRAP  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 
-fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 
-march=i386 -mtune=generic -fasynchronous-unwind-tables -MT 
rfg_regions.o -MD -MP -MF .deps/rfg_regions.Tpo -c -o rfg_regions.o 
rfg_regions.c
*vt_iowrap.c:1242: error: expected declaration specifiers or '...' 
before numeric constant

vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk'
*gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib 
-I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE 
-DBINDIR=\"/usr/local/mpi/gcc/openmpi-1.3.1rc4/bin\" 
-DDATADIR=\"/usr/local/mpi/gcc/openmpi-1.3.1rc4/share\" -DRFG  
-DVT_MEMHOOK -DVT_IOWRAP  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 
-fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 
-march=i386 -mtune=generic -fasynchronous-unwind-tables -MT rfg_filter.o 
-MD -MP -MF .deps/rfg_filter.Tpo -c -o rfg_filter.o rfg_filter.c

make[5]: *** [vt_iowrap.o] Error 1
make[5]: *** Waiting for unfinished jobs
mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po
mv -f .deps/rfg_filter.Tpo .deps/rfg_filter.Po
mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po
make[5]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt/vtlib'

make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt'

make[3]: *** [all] Error 2
make[3]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt'

make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt'

make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi'

make: *** [all-recursive] Error 1
error: Bad exit status from /var/tmp/rpm-tmp.43206 (%build)



Ralph H. Castain wrote:

Looks okay to me Brian - I went ahead and filed the CMR and sent it on to
Brad for approval.

Ralph


  

On Tue, 3 Mar 2009, Brian W. Barrett wrote:



On Tue, 3 Mar 2009, Jeff Squyres wrote:

  

1.3.1rc3 had a race condition in the ORTE shutdown sequence.  The only
difference between rc3 and rc4 was a fix for that race condition.
Please
test ASAP:

  http://www.open-mpi.org/software/ompi/v1.3/


I'm sorry, I've failed to test rc1 & rc2 on Catamount.  I'm getting a
compile
failure in the ORTE code.  I'll do a bit more testing and send Ralph an
e-mail this afternoon.
  

Attached is a patch against v1.3 branch that makes it work on Red Storm.
I'm not sure it's right, so I'm just e-mailing it rather than committing..
Sorry Ralph, but can you take a look? :(

Brian___
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