Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
Yes, _FORTIFY_SOURCE does a lot of pedantic things -- google around and you'll find out what it does. FWIW, we had to make some other changes in OMPI to handle _FORTIFY_SOURCE as well. On Jan 20, 2009, at 9:17 AM, Jonathan Billings wrote: I believe the situation that is causing the error has to do with GCC's FORTIFY_SOURCE. I'm building under CentOS 5.2 using the 1.3 src.rpm available on the website: % gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/ otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/usr/bin\" - DDATADIR=\"/usr/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector -- param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap.o -MD -MP - MF .deps/vt_iowrap.Tpo -c -o vt_iowrap.o vt_iowrap.c vt_iowrap.c:1242: error: expected declaration specifiers or ‘...’ before numeric constant vt_iowrap.c:1243: error: conflicting types for ‘__fprintf_chk’ % (compile fails) I cd into the appropriate area, and re-run the gcc without -D_FORTIFY_SOURCE=2: % gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/ otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/usr/bin\" - DDATADIR=\"/usr/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 - mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o vt_iowrap.o vt_iowrap.c % (compile succeeds) If I change the spec file to remove the -D_FORTIFY_SOURCE define from RPM_OPT_FLAGS (like what is done for non-gcc compilers) the build succeeds. It appears that the additional define is more strict and causes problems when the default RPM build environment is kept intact. -- Jonathan Billings The College of Language, Science, and the Arts LS&A IT - Research Systems and Support ___ devel mailing list de...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/devel -- Jeff Squyres Cisco Systems
Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
I believe the situation that is causing the error has to do with GCC's FORTIFY_SOURCE. I'm building under CentOS 5.2 using the 1.3 src.rpm available on the website: % gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/usr/bin\" -DDATADIR=\"/usr/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o vt_iowrap.o vt_iowrap.c vt_iowrap.c:1242: error: expected declaration specifiers or ‘...’ before numeric constant vt_iowrap.c:1243: error: conflicting types for ‘__fprintf_chk’ % (compile fails) I cd into the appropriate area, and re-run the gcc without -D_FORTIFY_SOURCE=2: % gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/usr/bin\" -DDATADIR=\"/usr/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o vt_iowrap.o vt_iowrap.c % (compile succeeds) If I change the spec file to remove the -D_FORTIFY_SOURCE define from RPM_OPT_FLAGS (like what is done for non-gcc compilers) the build succeeds. It appears that the additional define is more strict and causes problems when the default RPM build environment is kept intact. -- Jonathan Billings The College of Language, Science, and the Arts LS&A IT - Research Systems and Support
Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
Sorry, I have searched the whole day for a solution of that problem, but unfortunately, I'm clueless :-( I cannot say which flag causes the compile error. Furthermore, I'm also unable to reproduce this error on some different platforms. The coding style in the concerned source file looks also not special... My suggestion is to use the workaround (configure flag) for the 1.3 release. On Wed, 2009-01-14 at 07:57 -0500, Jeff Squyres wrote: > Is there some code that can be fixed instead? I.e., is this feature > totally incompatible with whatever RPM compiler flags are used, or is > it just some coding style that these particular flags don't like? > > > On Jan 14, 2009, at 5:05 AM, Matthias Jurenz wrote: > > > Another workaround should be to disable the I/O tracing feature of VT > > by adding the configure option > > > > '--with-contrib-vt-flags=--disable-iotrace' > > > > That will have the effect that the upcoming OMPI-rpm's have no support > > for I/O tracing, but in our opinion it is not so bad... > > > > Furthermore, we could add the configure option in > > 'ompi/contrib/vt/configure.m4' to retain the feature-consistency > > between > > the rpm's and the source packages. > > > > > > Matthias > > > > On Tue, 2009-01-13 at 17:13 +0200, Lenny Verkhovsky wrote: > >> I don't want to move changes ( default value of the flag), since > >> there > >> are important people, for whom it works :) > >> I also think that this is VT issue, but I guess we are the only one > >> who experience the errors. > >> > >> we can now overwrite this params from the environment as a > >> workaround, > >> Mike comitted buildrpm.sh script to the trunk r20253 that allows > >> overwriting params from the environment. > >> > >> we observed the problem on CentOS 5.2 with boundled gcc and RedHat > >> 5.2 > >> with boundled gcc. > >> > >> #uname -a > >> Linux elfit1 2.6.18-92.el5 #1 SMP Tue Jun 10 18:51:06 EDT 2008 x86_64 > >> x86_64 x86_64 GNU/Linux > >> > >> #lsb_release -a > >> LSB Version: > >> :core-3.1-amd64:core-3.1-ia32:core-3.1-noarch:graphics-3.1- > >> amd64:graphics-3.1-ia32:graphics-3.1-noarch > >> Distributor ID: CentOS > >> Description:CentOS release 5.2 (Final) > >> Release:5.2 > >> Codename: Final > >> > >> gcc version 4.1.2 20071124 (Red Hat 4.1.2-42) > >> > >> Best regards, > >> Lenny. > >> > >> > >> On Tue, Jan 13, 2009 at 4:40 PM, Jeff Squyres > >> wrote: > >>> I'm still guessing that this is a distro / compiler issue -- I can > >>> build > >>> with the default flags just fine...? > >>> > >>> Can you specify what distro / compiler you were using? > >>> > >>> Also, if you want to move the changes that have been made to > >>> buildrpm.sh to > >>> the v1.3 branch, just file a CMR. That file is not included in > >>> release > >>> tarballs, so Tim can move it over at any time. > >>> > >>> > >>> > >>> On Jan 13, 2009, at 6:35 AM, Lenny Verkhovsky wrote: > >>> > it seems that setting use_default_rpm_opt_flags to 0 solves the > problem. > Maybe vt developers should take a look on it. > > Lenny. > > > On Sun, Jan 11, 2009 at 2:40 PM, Jeff Squyres > wrote: > > > > This sounds like a distro/compiler version issue. > > > > Can you narrow down the issue at all? > > > > > > On Jan 11, 2009, at 3:23 AM, Lenny Verkhovsky wrote: > > > >> it doesnt happen if I do autogen, configure and make install, > >> only when I try to make an rpm from the tar file. > >> > >> > >> > >> On Thu, Jan 8, 2009 at 9:43 PM, Jeff Squyres > >> wrote: > >>> > >>> This doesn't happen in a normal build of the same tree? > >>> > >>> I ask because both 1.3r20226 builds fine for me manually (i.e., > >>> ./configure;make and buildrpm.sh). > >>> > >>> > >>> On Jan 8, 2009, at 8:15 AM, Lenny Verkhovsky wrote: > >>> > Hi, > > I am trying to build rpm from nightly snaposhots of 1.3 > > with the downloaded buildrpm.sh and ompi.spec file from > http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/ > > I am getting this error > . > Making all in vtlib > make[5]: Entering directory > > `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/ > OMPI/BUILD/ > openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' > gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib > -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE > -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" > -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG > -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,- > D_FORTIFY_SOURCE=2 > -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 > -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/ > vt_co
Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
Is there some code that can be fixed instead? I.e., is this feature totally incompatible with whatever RPM compiler flags are used, or is it just some coding style that these particular flags don't like? On Jan 14, 2009, at 5:05 AM, Matthias Jurenz wrote: Another workaround should be to disable the I/O tracing feature of VT by adding the configure option '--with-contrib-vt-flags=--disable-iotrace' That will have the effect that the upcoming OMPI-rpm's have no support for I/O tracing, but in our opinion it is not so bad... Furthermore, we could add the configure option in 'ompi/contrib/vt/configure.m4' to retain the feature-consistency between the rpm's and the source packages. Matthias On Tue, 2009-01-13 at 17:13 +0200, Lenny Verkhovsky wrote: I don't want to move changes ( default value of the flag), since there are important people, for whom it works :) I also think that this is VT issue, but I guess we are the only one who experience the errors. we can now overwrite this params from the environment as a workaround, Mike comitted buildrpm.sh script to the trunk r20253 that allows overwriting params from the environment. we observed the problem on CentOS 5.2 with boundled gcc and RedHat 5.2 with boundled gcc. #uname -a Linux elfit1 2.6.18-92.el5 #1 SMP Tue Jun 10 18:51:06 EDT 2008 x86_64 x86_64 x86_64 GNU/Linux #lsb_release -a LSB Version: :core-3.1-amd64:core-3.1-ia32:core-3.1-noarch:graphics-3.1- amd64:graphics-3.1-ia32:graphics-3.1-noarch Distributor ID: CentOS Description:CentOS release 5.2 (Final) Release:5.2 Codename: Final gcc version 4.1.2 20071124 (Red Hat 4.1.2-42) Best regards, Lenny. On Tue, Jan 13, 2009 at 4:40 PM, Jeff Squyres wrote: I'm still guessing that this is a distro / compiler issue -- I can build with the default flags just fine...? Can you specify what distro / compiler you were using? Also, if you want to move the changes that have been made to buildrpm.sh to the v1.3 branch, just file a CMR. That file is not included in release tarballs, so Tim can move it over at any time. On Jan 13, 2009, at 6:35 AM, Lenny Verkhovsky wrote: it seems that setting use_default_rpm_opt_flags to 0 solves the problem. Maybe vt developers should take a look on it. Lenny. On Sun, Jan 11, 2009 at 2:40 PM, Jeff Squyres wrote: This sounds like a distro/compiler version issue. Can you narrow down the issue at all? On Jan 11, 2009, at 3:23 AM, Lenny Verkhovsky wrote: it doesnt happen if I do autogen, configure and make install, only when I try to make an rpm from the tar file. On Thu, Jan 8, 2009 at 9:43 PM, Jeff Squyres wrote: This doesn't happen in a normal build of the same tree? I ask because both 1.3r20226 builds fine for me manually (i.e., ./configure;make and buildrpm.sh). On Jan 8, 2009, at 8:15 AM, Lenny Verkhovsky wrote: Hi, I am trying to build rpm from nightly snaposhots of 1.3 with the downloaded buildrpm.sh and ompi.spec file from http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/ I am getting this error . Making all in vtlib make[5]: Entering directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/ OMPI/BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/ vt_comp_gnu.Tpo -c -o vt_comp_gnu.o vt_comp_gnu.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memhook.o -MD -MP -MF .deps/ vt_memhook.Tpo -c -o vt_memhook.o vt_memhook.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memreg.o -MD -MP -MF .deps/ vt_memreg.Tpo -c -o vt_memreg.o vt_memreg.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-prote
Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
Another workaround should be to disable the I/O tracing feature of VT by adding the configure option '--with-contrib-vt-flags=--disable-iotrace' That will have the effect that the upcoming OMPI-rpm's have no support for I/O tracing, but in our opinion it is not so bad... Furthermore, we could add the configure option in 'ompi/contrib/vt/configure.m4' to retain the feature-consistency between the rpm's and the source packages. Matthias On Tue, 2009-01-13 at 17:13 +0200, Lenny Verkhovsky wrote: > I don't want to move changes ( default value of the flag), since there > are important people, for whom it works :) > I also think that this is VT issue, but I guess we are the only one > who experience the errors. > > we can now overwrite this params from the environment as a workaround, > Mike comitted buildrpm.sh script to the trunk r20253 that allows > overwriting params from the environment. > > we observed the problem on CentOS 5.2 with boundled gcc and RedHat 5.2 > with boundled gcc. > > #uname -a > Linux elfit1 2.6.18-92.el5 #1 SMP Tue Jun 10 18:51:06 EDT 2008 x86_64 > x86_64 x86_64 GNU/Linux > > #lsb_release -a > LSB Version: > :core-3.1-amd64:core-3.1-ia32:core-3.1-noarch:graphics-3.1-amd64:graphics-3.1-ia32:graphics-3.1-noarch > Distributor ID: CentOS > Description:CentOS release 5.2 (Final) > Release:5.2 > Codename: Final > > gcc version 4.1.2 20071124 (Red Hat 4.1.2-42) > > Best regards, > Lenny. > > > On Tue, Jan 13, 2009 at 4:40 PM, Jeff Squyres wrote: > > I'm still guessing that this is a distro / compiler issue -- I can build > > with the default flags just fine...? > > > > Can you specify what distro / compiler you were using? > > > > Also, if you want to move the changes that have been made to buildrpm.sh to > > the v1.3 branch, just file a CMR. That file is not included in release > > tarballs, so Tim can move it over at any time. > > > > > > > > On Jan 13, 2009, at 6:35 AM, Lenny Verkhovsky wrote: > > > >> it seems that setting use_default_rpm_opt_flags to 0 solves the problem. > >> Maybe vt developers should take a look on it. > >> > >> Lenny. > >> > >> > >> On Sun, Jan 11, 2009 at 2:40 PM, Jeff Squyres wrote: > >>> > >>> This sounds like a distro/compiler version issue. > >>> > >>> Can you narrow down the issue at all? > >>> > >>> > >>> On Jan 11, 2009, at 3:23 AM, Lenny Verkhovsky wrote: > >>> > it doesnt happen if I do autogen, configure and make install, > only when I try to make an rpm from the tar file. > > > > On Thu, Jan 8, 2009 at 9:43 PM, Jeff Squyres wrote: > > > > This doesn't happen in a normal build of the same tree? > > > > I ask because both 1.3r20226 builds fine for me manually (i.e., > > ./configure;make and buildrpm.sh). > > > > > > On Jan 8, 2009, at 8:15 AM, Lenny Verkhovsky wrote: > > > >> Hi, > >> > >> I am trying to build rpm from nightly snaposhots of 1.3 > >> > >> with the downloaded buildrpm.sh and ompi.spec file from > >> http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/ > >> > >> I am getting this error > >> . > >> Making all in vtlib > >> make[5]: Entering directory > >> > >> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ > >> openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' > >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib > >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE > >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" > >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG > >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 > >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 > >> -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/vt_comp_gnu.Tpo -c > >> -o > >> vt_comp_gnu.o vt_comp_gnu.c > >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib > >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE > >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" > >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG > >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 > >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 > >> -mtune=generic -MT vt_memhook.o -MD -MP -MF .deps/vt_memhook.Tpo -c -o > >> vt_memhook.o vt_memhook.c > >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib > >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE > >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" > >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG > >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 > >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 > >> -mtune=generic -MT vt_memreg.o -MD -MP -MF .deps/vt_memreg.Tpo -c -o > >> vt_memreg.o vt_memreg.c > >> gc
Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
I don't want to move changes ( default value of the flag), since there are important people, for whom it works :) I also think that this is VT issue, but I guess we are the only one who experience the errors. we can now overwrite this params from the environment as a workaround, Mike comitted buildrpm.sh script to the trunk r20253 that allows overwriting params from the environment. we observed the problem on CentOS 5.2 with boundled gcc and RedHat 5.2 with boundled gcc. #uname -a Linux elfit1 2.6.18-92.el5 #1 SMP Tue Jun 10 18:51:06 EDT 2008 x86_64 x86_64 x86_64 GNU/Linux #lsb_release -a LSB Version: :core-3.1-amd64:core-3.1-ia32:core-3.1-noarch:graphics-3.1-amd64:graphics-3.1-ia32:graphics-3.1-noarch Distributor ID: CentOS Description:CentOS release 5.2 (Final) Release:5.2 Codename: Final gcc version 4.1.2 20071124 (Red Hat 4.1.2-42) Best regards, Lenny. On Tue, Jan 13, 2009 at 4:40 PM, Jeff Squyres wrote: > I'm still guessing that this is a distro / compiler issue -- I can build > with the default flags just fine...? > > Can you specify what distro / compiler you were using? > > Also, if you want to move the changes that have been made to buildrpm.sh to > the v1.3 branch, just file a CMR. That file is not included in release > tarballs, so Tim can move it over at any time. > > > > On Jan 13, 2009, at 6:35 AM, Lenny Verkhovsky wrote: > >> it seems that setting use_default_rpm_opt_flags to 0 solves the problem. >> Maybe vt developers should take a look on it. >> >> Lenny. >> >> >> On Sun, Jan 11, 2009 at 2:40 PM, Jeff Squyres wrote: >>> >>> This sounds like a distro/compiler version issue. >>> >>> Can you narrow down the issue at all? >>> >>> >>> On Jan 11, 2009, at 3:23 AM, Lenny Verkhovsky wrote: >>> it doesnt happen if I do autogen, configure and make install, only when I try to make an rpm from the tar file. On Thu, Jan 8, 2009 at 9:43 PM, Jeff Squyres wrote: > > This doesn't happen in a normal build of the same tree? > > I ask because both 1.3r20226 builds fine for me manually (i.e., > ./configure;make and buildrpm.sh). > > > On Jan 8, 2009, at 8:15 AM, Lenny Verkhovsky wrote: > >> Hi, >> >> I am trying to build rpm from nightly snaposhots of 1.3 >> >> with the downloaded buildrpm.sh and ompi.spec file from >> http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/ >> >> I am getting this error >> . >> Making all in vtlib >> make[5]: Entering directory >> >> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ >> openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 >> -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/vt_comp_gnu.Tpo -c >> -o >> vt_comp_gnu.o vt_comp_gnu.c >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 >> -mtune=generic -MT vt_memhook.o -MD -MP -MF .deps/vt_memhook.Tpo -c -o >> vt_memhook.o vt_memhook.c >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 >> -mtune=generic -MT vt_memreg.o -MD -MP -MF .deps/vt_memreg.Tpo -c -o >> vt_memreg.o vt_memreg.c >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 >> -mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o >> vt_iowrap.o vt_iowrap.c >> mv -f .deps/vt_memreg.Tpo .deps/vt_memreg.Po >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\"
Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
I'm still guessing that this is a distro / compiler issue -- I can build with the default flags just fine...? Can you specify what distro / compiler you were using? Also, if you want to move the changes that have been made to buildrpm.sh to the v1.3 branch, just file a CMR. That file is not included in release tarballs, so Tim can move it over at any time. On Jan 13, 2009, at 6:35 AM, Lenny Verkhovsky wrote: it seems that setting use_default_rpm_opt_flags to 0 solves the problem. Maybe vt developers should take a look on it. Lenny. On Sun, Jan 11, 2009 at 2:40 PM, Jeff Squyres wrote: This sounds like a distro/compiler version issue. Can you narrow down the issue at all? On Jan 11, 2009, at 3:23 AM, Lenny Verkhovsky wrote: it doesnt happen if I do autogen, configure and make install, only when I try to make an rpm from the tar file. On Thu, Jan 8, 2009 at 9:43 PM, Jeff Squyres wrote: This doesn't happen in a normal build of the same tree? I ask because both 1.3r20226 builds fine for me manually (i.e., ./configure;make and buildrpm.sh). On Jan 8, 2009, at 8:15 AM, Lenny Verkhovsky wrote: Hi, I am trying to build rpm from nightly snaposhots of 1.3 with the downloaded buildrpm.sh and ompi.spec file from http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/ I am getting this error . Making all in vtlib make[5]: Entering directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/ OMPI/BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/ vt_comp_gnu.Tpo -c -o vt_comp_gnu.o vt_comp_gnu.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memhook.o -MD -MP -MF .deps/vt_memhook.Tpo -c -o vt_memhook.o vt_memhook.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memreg.o -MD -MP -MF .deps/vt_memreg.Tpo - c -o vt_memreg.o vt_memreg.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo - c -o vt_iowrap.o vt_iowrap.c mv -f .deps/vt_memreg.Tpo .deps/vt_memreg.Po gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap_helper.o -MD -MP -MF .deps/vt_iowrap_helper.Tpo -c -o vt_iowrap_helper.o vt_iowrap_helper.c mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT rfg_regions.o -MD -MP -MF .deps/ rfg_regions.Tpo -c -o rfg_regions.o rfg_regions.c vt_iowrap.c:1242: error: expected declaration specifiers or '...' before numeric constant vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk' mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po make[5]: *** [vt_iowrap.o] Error 1 make[5]: *** Waiting for unfinished jobs mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po make[5]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/ OMPI/BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' make[4]: *** [all-recursive] Er
Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
it seems that setting use_default_rpm_opt_flags to 0 solves the problem. Maybe vt developers should take a look on it. Lenny. On Sun, Jan 11, 2009 at 2:40 PM, Jeff Squyres wrote: > This sounds like a distro/compiler version issue. > > Can you narrow down the issue at all? > > > On Jan 11, 2009, at 3:23 AM, Lenny Verkhovsky wrote: > >> it doesnt happen if I do autogen, configure and make install, >> only when I try to make an rpm from the tar file. >> >> >> >> On Thu, Jan 8, 2009 at 9:43 PM, Jeff Squyres wrote: >>> >>> This doesn't happen in a normal build of the same tree? >>> >>> I ask because both 1.3r20226 builds fine for me manually (i.e., >>> ./configure;make and buildrpm.sh). >>> >>> >>> On Jan 8, 2009, at 8:15 AM, Lenny Verkhovsky wrote: >>> Hi, I am trying to build rpm from nightly snaposhots of 1.3 with the downloaded buildrpm.sh and ompi.spec file from http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/ I am getting this error . Making all in vtlib make[5]: Entering directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/vt_comp_gnu.Tpo -c -o vt_comp_gnu.o vt_comp_gnu.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memhook.o -MD -MP -MF .deps/vt_memhook.Tpo -c -o vt_memhook.o vt_memhook.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memreg.o -MD -MP -MF .deps/vt_memreg.Tpo -c -o vt_memreg.o vt_memreg.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o vt_iowrap.o vt_iowrap.c mv -f .deps/vt_memreg.Tpo .deps/vt_memreg.Po gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap_helper.o -MD -MP -MF .deps/vt_iowrap_helper.Tpo -c -o vt_iowrap_helper.o vt_iowrap_helper.c mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT rfg_regions.o -MD -MP -MF .deps/rfg_regions.Tpo -c -o rfg_regions.o rfg_regions.c vt_iowrap.c:1242: error: expected declaration specifiers or '...' before numeric constant vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk' mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po make[5]: *** [vt_iowrap.o] Error 1 make[5]: *** Waiting for unfinished jobs mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po make[5]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory `/hpc/home/U
Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
This sounds like a distro/compiler version issue. Can you narrow down the issue at all? On Jan 11, 2009, at 3:23 AM, Lenny Verkhovsky wrote: it doesnt happen if I do autogen, configure and make install, only when I try to make an rpm from the tar file. On Thu, Jan 8, 2009 at 9:43 PM, Jeff Squyres wrote: This doesn't happen in a normal build of the same tree? I ask because both 1.3r20226 builds fine for me manually (i.e., ./configure;make and buildrpm.sh). On Jan 8, 2009, at 8:15 AM, Lenny Verkhovsky wrote: Hi, I am trying to build rpm from nightly snaposhots of 1.3 with the downloaded buildrpm.sh and ompi.spec file from http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/ I am getting this error . Making all in vtlib make[5]: Entering directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/vt_comp_gnu.Tpo -c -o vt_comp_gnu.o vt_comp_gnu.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memhook.o -MD -MP -MF .deps/vt_memhook.Tpo - c -o vt_memhook.o vt_memhook.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memreg.o -MD -MP -MF .deps/vt_memreg.Tpo -c -o vt_memreg.o vt_memreg.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o vt_iowrap.o vt_iowrap.c mv -f .deps/vt_memreg.Tpo .deps/vt_memreg.Po gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap_helper.o -MD -MP -MF .deps/vt_iowrap_helper.Tpo -c -o vt_iowrap_helper.o vt_iowrap_helper.c mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT rfg_regions.o -MD -MP -MF .deps/rfg_regions.Tpo -c -o rfg_regions.o rfg_regions.c vt_iowrap.c:1242: error: expected declaration specifiers or '...' before numeric constant vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk' mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po make[5]: *** [vt_iowrap.o] Error 1 make[5]: *** Waiting for unfinished jobs mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po make[5]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt' make[3]: *** [all] Error 2 make[3]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ o
Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
it doesnt happen if I do autogen, configure and make install, only when I try to make an rpm from the tar file. On Thu, Jan 8, 2009 at 9:43 PM, Jeff Squyres wrote: > This doesn't happen in a normal build of the same tree? > > I ask because both 1.3r20226 builds fine for me manually (i.e., > ./configure;make and buildrpm.sh). > > > On Jan 8, 2009, at 8:15 AM, Lenny Verkhovsky wrote: > >> Hi, >> >> I am trying to build rpm from nightly snaposhots of 1.3 >> >> with the downloaded buildrpm.sh and ompi.spec file from >> http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/ >> >> I am getting this error >> . >> Making all in vtlib >> make[5]: Entering directory >> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ >> openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 >> -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/vt_comp_gnu.Tpo -c -o >> vt_comp_gnu.o vt_comp_gnu.c >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 >> -mtune=generic -MT vt_memhook.o -MD -MP -MF .deps/vt_memhook.Tpo -c -o >> vt_memhook.o vt_memhook.c >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 >> -mtune=generic -MT vt_memreg.o -MD -MP -MF .deps/vt_memreg.Tpo -c -o >> vt_memreg.o vt_memreg.c >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 >> -mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o >> vt_iowrap.o vt_iowrap.c >> mv -f .deps/vt_memreg.Tpo .deps/vt_memreg.Po >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 >> -mtune=generic -MT vt_iowrap_helper.o -MD -MP -MF >> .deps/vt_iowrap_helper.Tpo -c -o vt_iowrap_helper.o vt_iowrap_helper.c >> mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE >> -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" >> -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG >> -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 >> -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 >> -mtune=generic -MT rfg_regions.o -MD -MP -MF .deps/rfg_regions.Tpo -c -o >> rfg_regions.o rfg_regions.c >> vt_iowrap.c:1242: error: expected declaration specifiers or '...' before >> numeric constant >> vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk' >> mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po >> make[5]: *** [vt_iowrap.o] Error 1 >> make[5]: *** Waiting for unfinished jobs >> mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po >> mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po >> make[5]: Leaving directory >> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ >> openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' >> make[4]: *** [all-recursive] Error 1 >> make[4]: Leaving directory >> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ >> openmpi-1.3rc3r20226/ompi/contrib/vt/vt' >> make[3]: *** [all] Error 2 >> make[3]: Leaving directory >> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ >> openmpi-1.3rc3r20226/ompi/contrib/vt/vt' >> make[2]: *** [all-recursive] Error 1 >> make[2]: Leaving directory >> `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ >> openmpi-1.3rc3r20226/ompi/contrib/vt' >> make[1]: *** [all-recursive] Error 1 >> make[1]: Lea
Re: [OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
This doesn't happen in a normal build of the same tree? I ask because both 1.3r20226 builds fine for me manually (i.e., ./ configure;make and buildrpm.sh). On Jan 8, 2009, at 8:15 AM, Lenny Verkhovsky wrote: Hi, I am trying to build rpm from nightly snaposhots of 1.3 with the downloaded buildrpm.sh and ompi.spec file from http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/ I am getting this error . Making all in vtlib make[5]: Entering directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/vt_comp_gnu.Tpo - c -o vt_comp_gnu.o vt_comp_gnu.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memhook.o -MD -MP -MF .deps/vt_memhook.Tpo -c -o vt_memhook.o vt_memhook.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memreg.o -MD -MP -MF .deps/vt_memreg.Tpo -c -o vt_memreg.o vt_memreg.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o vt_iowrap.o vt_iowrap.c mv -f .deps/vt_memreg.Tpo .deps/vt_memreg.Po gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap_helper.o -MD -MP -MF .deps/vt_iowrap_helper.Tpo -c -o vt_iowrap_helper.o vt_iowrap_helper.c mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT rfg_regions.o -MD -MP -MF .deps/rfg_regions.Tpo - c -o rfg_regions.o rfg_regions.c vt_iowrap.c:1242: error: expected declaration specifiers or '...' before numeric constant vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk' mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po make[5]: *** [vt_iowrap.o] Error 1 make[5]: *** Waiting for unfinished jobs mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po make[5]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt' make[3]: *** [all] Error 2 make[3]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/ BUILD/ openmpi-1.3rc3r20226/ompi' make: *** [all-recursive] Error 1 error: Bad exit status from /var/tmp/rpm-tmp.32080 (%build) RPM build errors: Bad exit status from /var/tmp/rpm-tmp.32080 (%build) RPM build errors: Bad exit status from /var/tmp/rpm-tmp.32080 (%build) full error.log attached thanks, Lenny.
[OMPI devel] OpenMPI rpm build 1.3rc3r20226 build failed
Hi, I am trying to build rpm from nightly snaposhots of 1.3 with the downloaded buildrpm.sh and ompi.spec file from http://svn.open-mpi.org/svn/ompi/branches/v1.3/contrib/dist/linux/ I am getting this error . Making all in vtlib make[5]: Entering directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_comp_gnu.o -MD -MP -MF .deps/vt_comp_gnu.Tpo -c -o vt_comp_gnu.o vt_comp_gnu.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memhook.o -MD -MP -MF .deps/vt_memhook.Tpo -c -o vt_memhook.o vt_memhook.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_memreg.o -MD -MP -MF .deps/vt_memreg.Tpo -c -o vt_memreg.o vt_memreg.c gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o vt_iowrap.o vt_iowrap.c mv -f .deps/vt_memreg.Tpo .deps/vt_memreg.Po gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT vt_iowrap_helper.o -MD -MP -MF .deps/vt_iowrap_helper.Tpo -c -o vt_iowrap_helper.o vt_iowrap_helper.c mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE -DBINDIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/bin\" -DDATADIR=\"/opt/openmpi/1.3rc3r20226-V00/gcc/share\" -DRFG -DVT_MEMHOOK -DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT rfg_regions.o -MD -MP -MF .deps/rfg_regions.Tpo -c -o rfg_regions.o rfg_regions.c vt_iowrap.c:1242: error: expected declaration specifiers or '...' before numeric constant vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk' mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po make[5]: *** [vt_iowrap.o] Error 1 make[5]: *** Waiting for unfinished jobs mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po make[5]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt/vtlib' make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt' make[3]: *** [all] Error 2 make[3]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt/vt' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ openmpi-1.3rc3r20226/ompi/contrib/vt' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/OMPI/BUILD/ openmpi-1.3rc3r20226/ompi' make: *** [all-recursive] Error 1 error: Bad exit status from /var/tmp/rpm-tmp.32080 (%build) RPM build errors: Bad exit status from /var/tmp/rpm-tmp.32080 (%build) RPM build errors: Bad exit status from /var/tmp/rpm-tmp.32080 (%build) full error.log attached thanks, Lenny. Installing /hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3--1/rpmroot/SRPMS/openmpi-1.3rc3r20226-V00.src.rpm Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.32623 + umask 022 + cd /hpc/home/USERS/lennyb/work/svn/release/scripts/dist-1.3-
