Re: [easybuild] EB 3.6.0: Build of iomkl-2018.02.eb fails on Intel Omni-Path systems
Thanks Kenneth and Bart,
On 04/30/2018 03:24 PM, Kenneth Hoste wrote:
On 30/04/2018 15:12, Ole Holm Nielsen wrote:
On 04/30/2018 02:44 PM, Bart Oldeman wrote:
Hello Ole,
the issue is here:
ld: cannot find -lpciaccess
ld: cannot find -lxml2
to solve this you can either install OS packages (.rpm, .deb, etc.)
for libpciaccess and libxml2, and perhaps add them as OS dependencies.
Yes, I thought about this, but these packages are already present on
the system:
# rpm -q libxml2 libpciaccess
libxml2-2.9.1-6.el7_2.3.x86_64
libpciaccess-0.13.4-3.1.el7_4.x86_64
You may need to -devel versions of these...
I confirm that the OpenMPI build problem is solved if I install these
CentOS 7 devel libraries prior to building:
yum install libxml2-devel libpciaccess-devel
Alternatively you can put in dependencies for ('libxml2', '2.9.8')
and ('libpciaccess', '0.13.4'), where you would need to install
libpciaccess using GCCcore instead of an intel or foss toolchain.
So you mean that I may need to install these libraries as modules
using EB?
Yes, that's what Bart is suggesting.
I wonder why this hasn't popped up before though...
Do you mind opening an issue on this at
https://github.com/easybuilders/easybuild-easyconfigs/issues?
I've opened a new issue
https://github.com/easybuilders/easybuild-easyconfigs/issues/6257.
Maybe an extra "osdependencies" would be the preferred solution?
Thanks a lot,
Ole
On Mon, 30 Apr 2018 at 05:31, Ole Holm Nielsen
> wrote:
When we build on nodes with Intel Omni-Path software installed, the
build of "iomkl" fails:
$ eb iomkl-2018.02.eb -r
== temporary log file in case of crash
/tmp/eb-MDUNmr/easybuild-UxI3tr.log
== resolving dependencies ...
== processing EasyBuild easyconfig
/home/modules/software/EasyBuild/3.6.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.0-py2.7.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28.eb
== building and installing
OpenMPI/2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== FAILED: Installation ended unsuccessfully (build directory:
/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28):
build failed (first 300 chars): cmd " make -j 48 " exited with exit
code
2 and output:
Making all in config
make[1]: Entering directory
`/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config'
Intel Omni-Path systems
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.3/icc
== Results of the build can be found in the log file(s)
/tmp/eb-MDUNmr/easybuild-OpenMPI-2.1.3-20180430.105741.vWNYR.log
ERROR: Build of
/home/modules/software/EasyBuild/3.6.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.0-py2.7.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28.eb
failed (err: 'build failed (first 300 chars): cmd " make -j 48 "
exited
with exit code 2 and output:\nMaking all in config\nmake[1]:
Entering
directory
`/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config\'\nmake[1]:
Nothing to be done for `all\'.\nmake[1]: Leaving directory
`/home/modules/build/OpenMPI/2.1.3/icc')
The OpenMPI error log file contains near the end:
CCLD libopen-pal.la
ld: cannot find -lpciaccess
ld: cannot find -lxml2
make[2]: *** [libopen-pal.la ] Error 1
make[2]: Leaving directory
`/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/opal'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/opal'
make: *** [all-recursive] Error 1
(at easybuild/tools/run.py:501 in parse_cmd_output)
== 2018-04-30 11:03:17,152 easyblock.py:2702 WARNING build failed
(first
300 chars): cmd " make -j 48 " exited with exit code 2 and output:
Making all in config
make[1]: Entering directory
`/home/modules/build/OpenMPI/2.1.3/iccifort-
Intel Omni-Path
systems2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.3/icc
== 2018-04-30 11:03:17,152 easyblock.py:280 INFO Closing log for
application name OpenMPI version 2.1.3
Question: Can anyone point to the cause of this error? Did OpenMPI
2.1.3 introduce this error?
Extra information: The issue
https://github.com/easybuilders/easybuild-easyconfigs/issues/5805 is
fixed with EB 3.6.0 and OpenMPI 2.1.3. On our
Re: [easybuild] EB 3.6.0: Build of iomkl-2018.02.eb fails on Intel Omni-Path systems
On 04/30/2018 03:24 PM, Kenneth Hoste wrote: On 30/04/2018 15:12, Ole Holm Nielsen wrote: On 04/30/2018 02:44 PM, Bart Oldeman wrote: Hello Ole, the issue is here: ld: cannot find -lpciaccess ld: cannot find -lxml2 to solve this you can either install OS packages (.rpm, .deb, etc.) for libpciaccess and libxml2, and perhaps add them as OS dependencies. Yes, I thought about this, but these packages are already present on the system: # rpm -q libxml2 libpciaccess libxml2-2.9.1-6.el7_2.3.x86_64 libpciaccess-0.13.4-3.1.el7_4.x86_64 You may need to -devel versions of these... Good point! The -devel versions were absent, so I installed the RPMs now and will redo the build. /Ole
Re: [easybuild] EB 3.6.0: Build of iomkl-2018.02.eb fails on Intel Omni-Path systems
Hello Ole, you'd need the "-devel" packages too, e.g. libpciaccess-devel-0.13.4-3.1.el7_4.x86_64 you can install them as modules using EB, perhaps as hidden modules, it's your choice. Regards, Bart -- Dr. Bart E. Oldeman | bart.olde...@mcgill.ca | bart.olde...@calculquebec.ca Scientific Computing Analyst / Analyste en calcul scientifique McGill HPC Centre / Centre de Calcul Haute Performance de McGill | http://www.hpc.mcgill.ca Calcul Québec | http://www.calculquebec.ca Compute/Calcul Canada | http://www.computecanada.ca Tel/Tél: 514-396-8926 | Fax/Télécopieur: 514-396-8934
Re: [easybuild] EB 3.6.0: Build of iomkl-2018.02.eb fails on Intel Omni-Path systems
On 30/04/2018 15:12, Ole Holm Nielsen wrote:
On 04/30/2018 02:44 PM, Bart Oldeman wrote:
Hello Ole,
the issue is here:
ld: cannot find -lpciaccess
ld: cannot find -lxml2
to solve this you can either install OS packages (.rpm, .deb, etc.)
for libpciaccess and libxml2, and perhaps add them as OS dependencies.
Yes, I thought about this, but these packages are already present on the
system:
# rpm -q libxml2 libpciaccess
libxml2-2.9.1-6.el7_2.3.x86_64
libpciaccess-0.13.4-3.1.el7_4.x86_64
You may need to -devel versions of these...
Alternatively you can put in dependencies for ('libxml2', '2.9.8') and
('libpciaccess', '0.13.4'), where you would need to install
libpciaccess using GCCcore instead of an intel or foss toolchain.
So you mean that I may need to install these libraries as modules using EB?
Yes, that's what Bart is suggesting.
I wonder why this hasn't popped up before though...
Do you mind opening an issue on this at
https://github.com/easybuilders/easybuild-easyconfigs/issues?
regards,
Kenneth
Thanks,
Ole
On Mon, 30 Apr 2018 at 05:31, Ole Holm Nielsen
> wrote:
When we build on nodes with Intel Omni-Path software installed, the
build of "iomkl" fails:
$ eb iomkl-2018.02.eb -r
== temporary log file in case of crash
/tmp/eb-MDUNmr/easybuild-UxI3tr.log
== resolving dependencies ...
== processing EasyBuild easyconfig
/home/modules/software/EasyBuild/3.6.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.0-py2.7.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28.eb
== building and installing
OpenMPI/2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== FAILED: Installation ended unsuccessfully (build directory:
/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28):
build failed (first 300 chars): cmd " make -j 48 " exited with exit
code
2 and output:
Making all in config
make[1]: Entering directory
`/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config'
Intel Omni-Path systems
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.3/icc
== Results of the build can be found in the log file(s)
/tmp/eb-MDUNmr/easybuild-OpenMPI-2.1.3-20180430.105741.vWNYR.log
ERROR: Build of
/home/modules/software/EasyBuild/3.6.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.0-py2.7.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28.eb
failed (err: 'build failed (first 300 chars): cmd " make -j 48 "
exited
with exit code 2 and output:\nMaking all in config\nmake[1]: Entering
directory
`/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config\'\nmake[1]:
Nothing to be done for `all\'.\nmake[1]: Leaving directory
`/home/modules/build/OpenMPI/2.1.3/icc')
The OpenMPI error log file contains near the end:
CCLD libopen-pal.la
ld: cannot find -lpciaccess
ld: cannot find -lxml2
make[2]: *** [libopen-pal.la ] Error 1
make[2]: Leaving directory
`/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/opal'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/opal'
make: *** [all-recursive] Error 1
(at easybuild/tools/run.py:501 in parse_cmd_output)
== 2018-04-30 11:03:17,152 easyblock.py:2702 WARNING build failed
(first
300 chars): cmd " make -j 48 " exited with exit code 2 and output:
Making all in config
make[1]: Entering directory
`/home/modules/build/OpenMPI/2.1.3/iccifort-
Intel Omni-Path
systems2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.3/icc
== 2018-04-30 11:03:17,152 easyblock.py:280 INFO Closing log for
application name OpenMPI version 2.1.3
Question: Can anyone point to the cause of this error? Did OpenMPI
2.1.3 introduce this error?
Extra information: The issue
https://github.com/easybuilders/easybuild-easyconfigs/issues/5805 is
fixed with EB 3.6.0 and OpenMPI 2.1.3. On our systems with Mellanox
Infiniband software installed, the line in
OpenMPI-2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28.eb *does* fix the
issue
5805 on this platform:
configopts += '--without-ucx ' # hard disable UCX, to dance
around bug
(https://github.com/open-mpi/ompi/issues/4345)
On the Intel Omni-Path system I
Re: [easybuild] EB 3.6.0: Build of iomkl-2018.02.eb fails on Intel Omni-Path systems
Hello Ole,
the issue is here:
ld: cannot find -lpciaccess
ld: cannot find -lxml2
to solve this you can either install OS packages (.rpm, .deb, etc.) for
libpciaccess and libxml2, and perhaps add them as OS dependencies.
Alternatively you can put in dependencies for ('libxml2', '2.9.8') and
('libpciaccess', '0.13.4'), where you would need to install libpciaccess
using GCCcore instead of an intel or foss toolchain.
Regards,
Bart
On Mon, 30 Apr 2018 at 05:31, Ole Holm Nielsen
wrote:
> When we build on nodes with Intel Omni-Path software installed, the
> build of "iomkl" fails:
>
> $ eb iomkl-2018.02.eb -r
> == temporary log file in case of crash /tmp/eb-MDUNmr/easybuild-UxI3tr.log
> == resolving dependencies ...
> == processing EasyBuild easyconfig
>
> /home/modules/software/EasyBuild/3.6.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.0-py2.7.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28.eb
> == building and installing
> OpenMPI/2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28...
> == fetching files...
> == creating build dir, resetting environment...
> == unpacking...
> == patching...
> == preparing...
> == configuring...
> == building...
> == FAILED: Installation ended unsuccessfully (build directory:
> /home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28):
> build failed (first 300 chars): cmd " make -j 48 " exited with exit code
> 2 and output:
> Making all in config
> make[1]: Entering directory
> `/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config'
>
> Intel Omni-Path systems
> make[1]: Nothing to be done for `all'.
> make[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.3/icc
> == Results of the build can be found in the log file(s)
> /tmp/eb-MDUNmr/easybuild-OpenMPI-2.1.3-20180430.105741.vWNYR.log
> ERROR: Build of
> /home/modules/software/EasyBuild/3.6.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.0-py2.7.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28.eb
>
> failed (err: 'build failed (first 300 chars): cmd " make -j 48 " exited
> with exit code 2 and output:\nMaking all in config\nmake[1]: Entering
> directory
> `/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config\'\nmake[1]:
>
> Nothing to be done for `all\'.\nmake[1]: Leaving directory
> `/home/modules/build/OpenMPI/2.1.3/icc')
>
> The OpenMPI error log file contains near the end:
>
>CCLD libopen-pal.la
> ld: cannot find -lpciaccess
> ld: cannot find -lxml2
> make[2]: *** [libopen-pal.la] Error 1
> make[2]: Leaving directory
>
> `/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/opal'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory
>
> `/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/opal'
> make: *** [all-recursive] Error 1
> (at easybuild/tools/run.py:501 in parse_cmd_output)
> == 2018-04-30 11:03:17,152 easyblock.py:2702 WARNING build failed (first
> 300 chars): cmd " make -j 48 " exited with exit code 2 and output:
> Making all in config
> make[1]: Entering directory `/home/modules/build/OpenMPI/2.1.3/iccifort-
> Intel Omni-Path systems2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config'
> make[1]: Nothing to be done for `all'.
> make[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.3/icc
> == 2018-04-30 11:03:17,152 easyblock.py:280 INFO Closing log for
> application name OpenMPI version 2.1.3
>
>
> Question: Can anyone point to the cause of this error? Did OpenMPI
> 2.1.3 introduce this error?
>
>
> Extra information: The issue
> https://github.com/easybuilders/easybuild-easyconfigs/issues/5805 is
> fixed with EB 3.6.0 and OpenMPI 2.1.3. On our systems with Mellanox
> Infiniband software installed, the line in
> OpenMPI-2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28.eb *does* fix the issue
> 5805 on this platform:
>
> configopts += '--without-ucx ' # hard disable UCX, to dance around bug
> (https://github.com/open-mpi/ompi/issues/4345)
>
> On the Intel Omni-Path system I tried to comment out this line, but the
> build still fails with the same error.
>
> /Ole
>
>
> On 03/05/2018 03:44 PM, Åke Sandgren wrote:
> > To clarify, it's a bug in the OpenMPI configure script when dealing with
> > UCX which they haven't fixed.
> >
> > On 03/05/2018 03:36 PM, Balázs Hajgató wrote:
> >> Dear Ole,
> >>
> >> use
> >> configopts += '--without-ucx '
> >>
> >> in the OpenMPI easyconfig
> >>
> >> Sincerely,
> >>
> >> Balazs
> >>
> >
> >>> Thanks for any suggestions!
> >>>
> >>
> >
> --
> Ole Holm Nielsen
> PhD, Senior HPC Officer
> Department of Physics, Technical University of Denmark,
> Building 307, DK-2800 Kongens Lyngby, Denmark
> E-mail: ole.h.niel...@fysik.dtu.dk
> Homepage: http://dcwww.fysik.dtu.dk/~ohnielse/
> Tel: (+45) 4525 3187 / Mobile (+45) 5180 1620
> >> On 05/03/2018 15:27, Ole Holm Nielsen wrote:
> >>> Using EB 3.5.2 I'm
[easybuild] EB 3.6.0: Build of iomkl-2018.02.eb fails on Intel Omni-Path systems
When we build on nodes with Intel Omni-Path software installed, the build of "iomkl" fails: $ eb iomkl-2018.02.eb -r == temporary log file in case of crash /tmp/eb-MDUNmr/easybuild-UxI3tr.log == resolving dependencies ... == processing EasyBuild easyconfig /home/modules/software/EasyBuild/3.6.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.0-py2.7.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28.eb == building and installing OpenMPI/2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28... == fetching files... == creating build dir, resetting environment... == unpacking... == patching... == preparing... == configuring... == building... == FAILED: Installation ended unsuccessfully (build directory: /home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28): build failed (first 300 chars): cmd " make -j 48 " exited with exit code 2 and output: Making all in config make[1]: Entering directory `/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config' Intel Omni-Path systems make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.3/icc == Results of the build can be found in the log file(s) /tmp/eb-MDUNmr/easybuild-OpenMPI-2.1.3-20180430.105741.vWNYR.log ERROR: Build of /home/modules/software/EasyBuild/3.6.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.0-py2.7.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28.eb failed (err: 'build failed (first 300 chars): cmd " make -j 48 " exited with exit code 2 and output:\nMaking all in config\nmake[1]: Entering directory `/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config\'\nmake[1]: Nothing to be done for `all\'.\nmake[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.3/icc') The OpenMPI error log file contains near the end: CCLD libopen-pal.la ld: cannot find -lpciaccess ld: cannot find -lxml2 make[2]: *** [libopen-pal.la] Error 1 make[2]: Leaving directory `/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/opal' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.3/iccifort-2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/opal' make: *** [all-recursive] Error 1 (at easybuild/tools/run.py:501 in parse_cmd_output) == 2018-04-30 11:03:17,152 easyblock.py:2702 WARNING build failed (first 300 chars): cmd " make -j 48 " exited with exit code 2 and output: Making all in config make[1]: Entering directory `/home/modules/build/OpenMPI/2.1.3/iccifort- Intel Omni-Path systems2018.2.199-GCC-6.4.0-2.28/openmpi-2.1.3/config' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.3/icc == 2018-04-30 11:03:17,152 easyblock.py:280 INFO Closing log for application name OpenMPI version 2.1.3 Question: Can anyone point to the cause of this error? Did OpenMPI 2.1.3 introduce this error? Extra information: The issue https://github.com/easybuilders/easybuild-easyconfigs/issues/5805 is fixed with EB 3.6.0 and OpenMPI 2.1.3. On our systems with Mellanox Infiniband software installed, the line in OpenMPI-2.1.3-iccifort-2018.2.199-GCC-6.4.0-2.28.eb *does* fix the issue 5805 on this platform: configopts += '--without-ucx ' # hard disable UCX, to dance around bug (https://github.com/open-mpi/ompi/issues/4345) On the Intel Omni-Path system I tried to comment out this line, but the build still fails with the same error. /Ole On 03/05/2018 03:44 PM, Åke Sandgren wrote: To clarify, it's a bug in the OpenMPI configure script when dealing with UCX which they haven't fixed. On 03/05/2018 03:36 PM, Balázs Hajgató wrote: Dear Ole, use configopts += '--without-ucx ' in the OpenMPI easyconfig Sincerely, Balazs Thanks for any suggestions! -- Ole Holm Nielsen PhD, Senior HPC Officer Department of Physics, Technical University of Denmark, Building 307, DK-2800 Kongens Lyngby, Denmark E-mail: ole.h.niel...@fysik.dtu.dk Homepage: http://dcwww.fysik.dtu.dk/~ohnielse/ Tel: (+45) 4525 3187 / Mobile (+45) 5180 1620 On 05/03/2018 15:27, Ole Holm Nielsen wrote: Using EB 3.5.2 I'm trying to build the latest iomkl: eb iomkl-2018a.eb -r This works like a charm on 2 of our 3 binary architectures, but on our Sandy Bridge nodes with Mellanox Infiniband the build aborts: # eb iomkl-2018a.eb -r == temporary log file in case of crash /tmp/eb-Dnjmix/easybuild-6WeIK9.log == resolving dependencies ... == processing EasyBuild easyconfig /home/modules/software/EasyBuild/3.5.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.2-py2.7.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.2-iccifort-2018.1.163-GCC-6.4.0-2.28.eb == building and installing OpenMPI/2.1.2-iccifort-2018.1.163-GCC-6.4.0-2.28... == fetching files... == creating build dir, resetting environment... == unpacking... == patching... == preparing... ==
