I'm starting EasyBuild up on our new AMD "Genoa" platform with 1 AMD EPYC
9124 16-Core Processor with 2 threads/core, 384 GB RAM, and AlmaLinux 8.8 OS.
Unfortunately, building the foss-2022b toolchain exits during the testing
phase of OpenBLAS-0.3.21-GCC-12.2.0.eb as shown below. Does anyone have
ideas about what might be wrong?
$ eb foss-2022b.eb -r
(lines deleted)
== processing EasyBuild easyconfig
/home/modules/software/EasyBuild/4.8.1/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.3.21-GCC-12.2.0.eb
== building and installing OpenBLAS/0.3.21-GCC-12.2.0...
== fetching files...
== ... (took 7 secs)
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== ... (took 53 secs)
== testing...
== ... (took 12 secs)
== FAILED: Installation ended unsuccessfully (build directory:
/dev/shm/OpenBLAS/0.3.21/GCC-12.2.0): build failed (first 300 chars): cmd
" make tests BINARY='64' CC='gcc' FC='gfortran' MAKE_NB_JOBS='-1'
USE_OPENMP='1' USE_THREAD='1' " exited with exit code 2 and output:
/home/modules/software/binutils/2.39-GCCcore-12.2.0/bin/ld: warning:
/tmp/eb-74m3kzgo/ccy1Gkzg.o: missing .note.GNU-stack section implies
executable stack
/ (took 1 min 14 secs)
== Results of the build can be found in the log file(s)
/tmp/eb-74m3kzgo/easybuild-OpenBLAS-0.3.21-20230925.161149.UfDUO.log
ERROR: Build of
/home/modules/software/EasyBuild/4.8.1/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.3.21-GCC-12.2.0.eb
failed (err: 'build failed (first 300 chars): cmd " make tests
BINARY=\'64\' CC=\'gcc\' FC=\'gfortran\' MAKE_NB_JOBS=\'-1\'
USE_OPENMP=\'1\' USE_THREAD=\'1\' " exited with exit code 2 and
output:\n/home/modules/software/binutils/2.39-GCCcore-12.2.0/bin/ld:
warning: /tmp/eb-74m3kzgo/ccy1Gkzg.o: missing .note.GNU-stack section
implies executable stack\n/')
The log file shows some an error in test_kernel_regress.c:50:
(lines deleted)
./openblas_utest
TEST 1/37 max:smax_zero [OK]
TEST 2/37 max:dmax_positive [OK]
TEST 3/37 max:smax_negative [OK]
TEST 4/37 min:smin_zero [OK]
TEST 5/37 min:dmin_positive [OK]
TEST 6/37 min:smin_negative [OK]
TEST 7/37 amax:damax [OK]
TEST 8/37 amax:samax [OK]
TEST 9/37 ismax:negative_step_2 [OK]
TEST 10/37 ismax:positive_step_2 [OK]
TEST 11/37 ismin:negative_step_2 [OK]
TEST 12/37 ismin:positive_step_2 [OK]
TEST 13/37 drotmg:drotmg_D1_big_D2_big_flag_zero [OK]
TEST 14/37 drotmg:rotmg_D1eqD2_X1eqX2 [OK]
TEST 15/37 drotmg:rotmg_issue1452 [OK]
TEST 16/37 drotmg:rotmg [OK]
TEST 17/37 axpy:caxpy_inc_0 [OK]
TEST 18/37 axpy:saxpy_inc_0 [OK]
TEST 19/37 axpy:zaxpy_inc_0 [OK]
TEST 20/37 axpy:daxpy_inc_0 [OK]
TEST 21/37 zdotu:zdotu_offset_1 [OK]
TEST 22/37 zdotu:zdotu_n_1 [OK]
TEST 23/37 dsdot:dsdot_n_1 [OK]
TEST 24/37 swap:cswap_inc_0 [OK]
TEST 25/37 swap:sswap_inc_0 [OK]
TEST 26/37 swap:zswap_inc_0 [OK]
TEST 27/37 swap:dswap_inc_0 [OK]
TEST 28/37 rot:csrot_inc_0 [OK]
TEST 29/37 rot:srot_inc_0 [OK]
TEST 30/37 rot:zdrot_inc_0 [OK]
TEST 31/37 rot:drot_inc_0 [OK]
TEST 32/37 dnrm2:dnrm2_tiny [OK]
TEST 33/37 dnrm2:dnrm2_inf [OK]
TEST 34/37 potrf:smoketest_trivial [OK]
TEST 35/37 potrf:bug_695 [OK]
TEST 36/37 kernel_regress:skx_avx [FAIL]
ERR: test_kernel_regress.c:50 expected 0.000e+00, got 6.734e+01 (diff
-6.734e+01, tol 1.000e-10)
TEST 37/37 fork:safety_after_fork_in_parent [OK]
RESULTS: 37 tests (36 ok, 1 failed, 0 skipped) ran in 3 ms
make[1]: *** [Makefile:52: run_test] Error 1
make[1]: Leaving directory
'/dev/shm/OpenBLAS/0.3.21/GCC-12.2.0/OpenBLAS-0.3.21/utest'
make: *** [Makefile:150: tests] Error 2
(at easybuild/tools/run.py:681 in parse_cmd_output)
== 2023-09-25 16:13:04,292 build_log.py:267 INFO ... (took 12 secs)
== 2023-09-25 16:13:04,292 filetools.py:2012 INFO Removing lock
/home/modules/software/.locks/_home_modules_software_OpenBLAS_0.3.21-GCC-12.2.0.lock...
== 2023-09-25 16:13:04,293 filetools.py:383 INFO Path
/home/modules/software/.locks/_home_modules_software_OpenBLAS_0.3.21-GCC-12.2.0.lock
successfully removed.
== 2023-09-25 16:13:04,293 filetools.py:2016 INFO Lock removed:
/home/modules/software/.locks/_home_modules_software_OpenBLAS_0.3.21-GCC-12.2.0.lock
== 2023-09-25 16:13:04,293 easyblock.py:4277 WARNING build failed (first
300 chars): cmd " make tests BINARY='64' CC='gcc' FC='gfortran'
MAKE_NB_JOBS='-1' USE_OPENMP='1' USE_THREAD='1' " exited with exit code
2 and output:
/home/modules/software/binutils/2.39-GCCcore-12.2.0/bin/ld: warning:
/tmp/eb-74m3kzgo/ccy1Gkzg.o: missing .note.GNU-stack section implies
executable stack
/
== 2023-09-25 16:13:04,293 easyblock.py:328 INFO Closing log for
application name OpenBLAS version 0.3.21
Thanks,
Ole
--
Ole Holm Nielsen
PhD, Senior HPC Officer
Department of Physics, Technical University of Denmark
