[easybuild] RE: Problems installing NSS-3.51-GCCcore-9.3.0.eb
Thanks Stefan, With a little bit of tweaking I managed to get it to work :-) Best wishes, Simon [iterlogo]<http://www.iter.org/> Simon PINCHES Section Leader Plasma Modelling & Analysis Section ITER Organization, Building 72/2017, SCOP, SCOD, Science Division Route de Vinon-sur-Verdon - CS 90 046 - 13067 St Paul Lez Durance Cedex - France Phone: +33 4 42 17 65 42 Get the latest ITER news on http://www.iter.org/whatsnew Follow us on: Twitter<https://twitter.com/iterorg> - Facebook<https://www.facebook.com/ITEROrganization> - LinkedIn<https://www.linkedin.com/company/iter-organization> - Instagram<https://www.instagram.com/iterorganization> - Career page<https://www.iter.org/jobs> From: easybuild-ow...@lists.ugent.be On Behalf Of Dr. Stefan Harfst Sent: 28 May 2020 09:38 To: easybuild@lists.ugent.be Subject: [easybuild] Re: Problems installing NSS-3.51-GCCcore-9.3.0.eb Dear Simon, we have encountered the same problem with a different NSS-3.x versions and different GCCcores. The solution for us was to patch coreconf/config.mk and commenting out #DEFINES += -DNO_NSPR_10_SUPPORT which adds the missing symbols. The patch file is attached. We also changed the buildopts to # fix for not being able to find header files buildopts = ' NSPR_INCLUDE_DIR=$EBROOTNSPR/include/nspr NSPR_LIB_DIR=$EBROOTNSPR/lib USE_SYSTEM_ZLIB=1 BUILD_OPT=1 USE_64=1 && ' # CPATH="$EBROOTNSPR/include/nspr:$CPATH" && ' # also install pkgconfig file (see patch) buildopts += "cd config && make PREFIX=%(installdir)s BUILD_OPT=1 USE_64=1 && cd -" (this is for GCCcore/8.3.0, might be different for 9.3.0) We have not created a PR yet as we were not sure if this is causing some unwanted side-effects. Best wishes Stefan -- Scientific Computing Carl von Ossietzky University Oldenburg School of Mathematics and Natural Sciences 26111 Oldenburg, Germany Office: W03 1-139 Phone: +49-441-798 3147 E-Mail: stefan.har...@uni-oldenburg.de<mailto:stefan.har...@uni-oldenburg.de> www: http://www.uni-oldenburg.de/fk5/wr From: easybuild-requ...@lists.ugent.be<mailto:easybuild-requ...@lists.ugent.be> mailto:easybuild-requ...@lists.ugent.be>> on behalf of Pinches Simon mailto:simon.pinc...@iter.org>> Sent: Thursday, May 28, 2020 8:59:32 AM To: easybuild@lists.ugent.be<mailto:easybuild@lists.ugent.be> Subject: [easybuild] Problems installing NSS-3.51-GCCcore-9.3.0.eb Dear EB experts, I'm having problems installing NSS/3.51 (needed as a dependency of Qt5/5.14.1) on our CentOS 7.3 system. The error in the log is as given below. Does anyone know an easy fix? Thanks, Simon gcc -shared -m64 -Wl,--gc-sections -Wl,-z,defs -Wl,-soname -Wl,libnssutil3.so -Wl,--version-script,Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/nssutil.def -o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/libnssutil3.so Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/quickder.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secdig.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/derdec.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/derenc.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/dersubr.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/dertime.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/errstrs.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/nssb64d.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/nssb64e.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/nssrwlk.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/nssilock.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/oidstring.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/pkcs1sig.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/portreg.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secalgid.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secasn1d.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secasn1e.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secasn1u.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secitem.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secload.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secoid.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/sectime.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secport.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/templates.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/utf8.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/utilmod.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/utilpars.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/pkcs11uri.o -L../../../dist/Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/lib -L../../../dist/Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/lib -lplc4 -lplds4 -lnspr4 -lpthread -ldl -lc /work/imas/opt/EasyBuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: warning: wildcard match appears in both version 'NSSUTIL_3.12' and 'NSSUTIL_3.12.3' in script /work/imas/opt/EasyBuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: warning: wildcard match appears in both version 'NSSUTIL_3.12.3' and 'NSSUTIL_3.12.5' in script /
[easybuild] Re: Problems installing NSS-3.51-GCCcore-9.3.0.eb
Dear Simon, we have encountered the same problem with a different NSS-3.x versions and different GCCcores. The solution for us was to patch coreconf/config.mk and commenting out #DEFINES += -DNO_NSPR_10_SUPPORT which adds the missing symbols. The patch file is attached. We also changed the buildopts to # fix for not being able to find header files buildopts = ' NSPR_INCLUDE_DIR=$EBROOTNSPR/include/nspr NSPR_LIB_DIR=$EBROOTNSPR/lib USE_SYSTEM_ZLIB=1 BUILD_OPT=1 USE_64=1 && ' # CPATH="$EBROOTNSPR/include/nspr:$CPATH" && ' # also install pkgconfig file (see patch) buildopts += "cd config && make PREFIX=%(installdir)s BUILD_OPT=1 USE_64=1 && cd -" (this is for GCCcore/8.3.0, might be different for 9.3.0) We have not created a PR yet as we were not sure if this is causing some unwanted side-effects. Best wishes Stefan -- Scientific Computing Carl von Ossietzky University Oldenburg School of Mathematics and Natural Sciences 26111 Oldenburg, Germany Office: W03 1-139 Phone: +49-441-798 3147 E-Mail: stefan.har...@uni-oldenburg.de www: http://www.uni-oldenburg.de/fk5/wr From: easybuild-requ...@lists.ugent.be on behalf of Pinches Simon Sent: Thursday, May 28, 2020 8:59:32 AM To: easybuild@lists.ugent.be Subject: [easybuild] Problems installing NSS-3.51-GCCcore-9.3.0.eb Dear EB experts, I’m having problems installing NSS/3.51 (needed as a dependency of Qt5/5.14.1) on our CentOS 7.3 system. The error in the log is as given below. Does anyone know an easy fix? Thanks, Simon gcc -shared -m64 -Wl,--gc-sections -Wl,-z,defs -Wl,-soname -Wl,libnssutil3.so -Wl,--version-script,Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/nssutil.def -o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/libnssutil3.so Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/quickder.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secdig.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/derdec.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/derenc.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/dersubr.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/dertime.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/errstrs.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/nssb64d.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/nssb64e.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/nssrwlk.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/nssilock.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/oidstring.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/pkcs1sig.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/portreg.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secalgid.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secasn1d.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secasn1e.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secasn1u.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secitem.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secload.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secoid.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/sectime.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/secport.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/templates.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/utf8.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/utilmod.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/utilpars.o Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/pkcs11uri.o -L../../../dist/Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/lib -L../../../dist/Linux3.10_x86_64_gcc_glibc_PTH_64_OPT.OBJ/lib -lplc4 -lplds4 -lnspr4 -lpthread -ldl -lc /work/imas/opt/EasyBuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: warning: wildcard match appears in both version 'NSSUTIL_3.12' and 'NSSUTIL_3.12.3' in script /work/imas/opt/EasyBuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: warning: wildcard match appears in both version 'NSSUTIL_3.12.3' and 'NSSUTIL_3.12.5' in script /work/imas/opt/EasyBuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: warning: wildcard match appears in both version 'NSSUTIL_3.12.5' and 'NSSUTIL_3.12.7' in script /work/imas/opt/EasyBuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: warning: wildcard match appears in both version 'NSSUTIL_3.12.7' and 'NSSUTIL_3.13' in script /work/imas/opt/EasyBuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: warning: wildcard match appears in both version 'NSSUTIL_3.13' and 'NSSUTIL_3.14' in script /work/imas/opt/EasyBuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: warning: wildcard match appears in both version 'NSSUTIL_3.14' and 'NSSUTIL_3.15' in script /work/imas/opt/EasyBuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: warning: wildcard match appears in both version 'NSSUTIL_3.15' and 'NSSUTIL_3.17.1' in script /work/imas/opt/EasyBuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: warning: wildcard match appears in both version 'NSSUTIL_3.17.1' and 'NSSUTIL_3.21' in script /work/imas/opt/EasyBuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: warning: wildcard match appears in both version
