[ECOLOG-L] Postdoc in Aquatic Ecology - Deadline extended

2010-06-28 Thread Stephen B. Baines
Descriptive Title: Postdoctoral Associate (Temporary) Budget Title: same 
as above
Department: Ecology  Evolution Grade: SL-1
REF#: WC-S-6389-10-06-S State Professional Position State Line#: 30570
Campus: Stony Brook West Campus/HSC Salary: $35, 000 - $46, 000

Required Qualifications: Ph.D. in Ecology, Biological Oceanography, 
Environmental Biology or related field. Expertise in fundamental and 
applied ecology as demonstrated by publications, Ph.D. dissertation, 
and/or letters of recommendation from supervisors. Independent research 
experience in ecological fieldwork; fluency in both written and verbal 
English language; college level teaching experience. Preferred 

Qualifications: Teaching experience in large lectures. College teaching 
experience as sole instructor. Field and/or laboratory research experience 
in plankton ecology and aquatic biogeochemistry. Familiarity with 
ecological stoichiometry and biochemical bases of organismal elemental 
composition. Knowledge of phytoplankton and zooplankton communities. Some 
experience with advanced statistical techniques or mathematical modeling. 
Experience coordinating undergraduate research assistants.

Brief Description of Duties: The Postdoctoral Associate will spend 1/3 
effort on co-teaching an undergraduate introductory level Biology course 
and on co-teaching an introductory Masters course in Principles and 
Applications of Ecology and Evolution, and 2/3 effort on coordinating and 
assisting with research work on ecological projects. Utilizing his/her 
expertise, the incumbent will carry out work such as establishing links 
between elemental content and ecological traits of planktonic organisms, 
developing models, predicting changes to phytoplankton elemental 
composition and conducting surveys of plankton elemental composition.

Co-teach (with a faculty member) an undergraduate introductory level 
Biology course and co-teach (with a faculty member) an introductory level 
Masters course in Principles and Applications of Ecology and Evolution. 
Will be teaching 1/2 course per semester.  

Establish links between elemental content and ecological traits of 
planktonic organisms using cultures in the lab and literature data or 
other ecological laboratory experiments and analyses, depending on 
candidate's expertise.  

Develop models that predict how phytoplankton elemental composition will 
change in response to environmental and ecological gradients or develop 
other models of ecological responses, depending on candidate's expertise.

Conduct surveys of plankton elemental composition along relevant 
environmental gradients, or ecological fieldwork on other organisms along 
environmental gradients, depending on candidate's expertise.

Preparing grant proposals and peer-reviewed publications. Database setup, 
data entry and analysis.

Special Notes: This is a full time, temporary one year appointment, 
renewable up to a maximum of three years depending on funding. FLSA Exempt 
position, not eligible for the overtime provisions of the FLSA. Internal 
and external search to occur simultaneously. Occasional evenings, nights 
and/or weekends may be required. Some travel may be required.
The selected candidate must successfully clear a background investigation.
Application Procedure: Those interested in this position should submit a 
cover letter, CV and two letters of reference to:

Donna DiGiovanni
Postdoctoral Associate (6389) Search 
Department of Ecology  Evolution 650 Life Sciences Building
Stony Brook University Stony Brook, NY 11794-5245

Applications for this position must be received, as specified in the 
Application Procedure Section, no later than 5:00 PM Eastern Time on 
07/09/2010, unless specifically noted otherwise in the Special Notes 
Section.

STONY BROOK UNIVERSITY IS AN AFFIRMATIVE ACTION/EQUAL OPPORTUNITY EMPLOYER 
AND EDUCATOR. IF YOU NEED A DISABILITY-RELATED ACCOMMODATION, PLEASE CALL 
THE UNIVERSITY HUMAN RESOURCE SERVICES DEPARTMENT AT (631) 632-6161 OR THE 
UNIVERSITY HOSPITAL HUMAN RESOURCES DEPARTMENT AT (631) 444-4700. IN 
ACCORDANCE WITH THE TITLE II CRIME AWARENESS AND SECURITY ACT, A COPY OF 
OUR CRIME STATISTICS IS AVAILABLE UPON REQUEST BY CALLING (631) 632-7786. 
IT CAN ALSO BE VIEWED ON-LINE AT THE UNIVERSITY POLICE
WEBSITE AT http://wwwatonvbrook.edu/police

Job Category: K) Postdoctoral Positions.Posting Date: 06/13/2010
Additional Categories: E) Research (professional) and Technical to include 
lab support positions. 

***
Stony Brook University, home to many highly ranked graduate research 
programs, is located 60 miles from New York City on Long Island's scenic 
North Shore. Our 1,100-acre campus is home to 24,000 undergraduate, 
graduate, and doctoral students and more than 13,500 faculty and staff, 
including those employed at Stony Brook University Medical Center, Suffolk 
County's only academic medical center and tertiary 

Re: [ECOLOG-L] PCA Factor Loadings in Vegan

2010-06-28 Thread Gavin Simpson
On Sun, 2010-06-27 at 17:56 -0300, Alexandre F. Souza wrote:
 Hi all,
 
I am using vegan to run a pca on forest structural variables (tree
 density, basal area, average height, regeneration density) in R.
 However, I could not find out how to extract factor loadings
 (correlations of each variable with each pca axis).

Loadings on each axis are given by:

scores(ord, display = species, scaling = 2)

where 'ord' is your fitted ordination. I this scaling, angles between
the vectors defined by the scores on axis 1 and 2 are correlations.

Loadings aren't correlations themselves, however, they define a vector
in space and you need to compute the angle between this vector and each
axis.

I forget exactly how to compute the correlation between the vector
representing the species in n dimensions (n = 2) and each axis; sounds
like some elementary trigonometry is required (estimate angles of a
triangle with sides of lengths given by axis 1 score [ax1], axis 2 score
[ax2] and sqrt(ax1^2 + ax2^2) i.e. from Pythagorean distance), but the
scores give you everything you need to do this except for the trig.

If you have further questions, post on R-SIG-Ecology list or the Vegan
help forums:

https://r-forge.r-project.org/forum/forum.php?forum_id=194group_id=68

HTH

G

  
Do anyone know how to do that?
 
Thanks a lot,
 
Alexandre
 
 
 
 Dr. Alexandre F. Souza 
 Programa de Pós-Graduação em Biologia: Diversidade e Manejo da Vida
 Silvestre
 Universidade do Vale do Rio dos Sinos (UNISINOS)
 Av. UNISINOS 950 - C.P. 275, São Leopoldo 93022-000, RS  - Brasil
 Telefone: (051)3590-8477 ramal 1263
 Skype: alexfadigas
 afso...@unisinos.br
 http://www.unisinos.br/laboratorios/lecopop
 

-- 
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
 Dr. Gavin Simpson [t] +44 (0)20 7679 0522
 ECRC, UCL Geography,  [f] +44 (0)20 7679 0565
 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
 Gower Street, London  [w] http://www.ucl.ac.uk/~ucfagls/
 UK. WC1E 6BT. [w] http://www.freshwaters.org.uk
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%


[ECOLOG-L] Please post fall internship announcement

2010-06-28 Thread Gustafson, Dan
Intern Announcement for Fall Appointments at Smithsonian Environmental Research 
Center in Edgewater, MD
Immediate Openings for Fall 2010

The nutritional ecology program at SERC is collaborating with the US Geological 
Survey and the National Zoological Park in a study of the nutrient composition 
of the invertebrate prey eaten by sea otters on the Pacific coast of North 
America. Sea otters consume a wide variety of prey, but individual otters have 
specialized diets, consuming, for example, predominantly crabs and abalone, or 
clams and worms, or kelp bed snails. This internship is designed to determine 
some of the nutritional correlates of foraging choices by sea otters. This is 
part of a much larger study of sea otter foraging and conservation at multiple 
sites on the Pacific coast, from California to Alaska.

The intern will be based at the SERC campus in Edgewater, MD.  The intern will 
be expected to undertake the following responsibilities: 1. Inventory, weigh 
and process invertebrate samples shipped to SERC from our collaborators. 
Processing will include homogenization and sub-sampling.  2. Conduct 
nutritional analyses as directed by the principal investigator, Dr. Olav 
Oftedal.  In particular it is anticipated that prey samples will be dried and  
assayed for gross energy (by bomb calorimeter), nitrogen (by CHN gas analysis) 
and fatty acids (by gas chromatography).  3. Prepare a summary report of the 
work in relationship to prior data on sea otter prey and prior data on the 
foraging behavior of sea otters. 4. Prepare and deliver a presentation to SERC 
staff and students of the results of the internship. At the present time there 
is no plan that field work will be associated with this internship.

The internship will be conducted in the fall of 2010, but the exact start date 
is negotiable. Please go to the following link for electronic submission of 
application materials:https://solaa.si.edu/solaa/SOLAAHome.html
For any questions about this immediate opening please contact Dan Gustafson.


Daniel E. Gustafson, Jr.
Smithsonian Environmental Research Center
Fellowship Coordinator
647 Contees Wharf Rd
PO Box 28
Edgewater, MD. 21037
443.482.2217 (phone)
443.482.2380 (fax)
gustafs...@si.edumailto:gustafs...@si.edu
www.serc.si.edu/pro_training/index.aspxhttp://www.serc.si.edu/pro_training/index.aspx


[ECOLOG-L] Job: faculty positions at the Okinawa Institute of Science and Technology

2010-06-28 Thread Sasha Mikheyev
The Okinawa Institute of Science and Technology (OIST http://www.oist.jp)
invites applications for new faculty positions as it enters a period of
growth in preparation for transition to an international graduate university
in 2012. Approximately 15 faculty positions will be filled during this
search. OIST provides a world-class research environment in newly completed
facilities in an area of distinctive culture, unique ecology, and
outstanding natural beauty.

Successful candidates will be given the opportunity to excel in their chosen
area of research, and will be expected to contribute to graduate teaching,
research supervision and other academic activities. Applicants should have a
PhD or equivalent degree, and demonstrate excellence in research.

The initial appointment will be as Principal Investigator (PI) or
Independent New Investigator (INI) for a term of five years. When the
transition to a graduate university is completed in 2012, it is planned that
PI and INI positions will change to a tenure track system with Assistant
Professors, Associate Professors, and Professors. Some appointments will be
made on a joint or part-time basis. Substantial internal funding will be
provided to support the faculty member’s research, based on a 5-year
research plan, which is renewable after scientific review.

This search is targeted broadly. The non-departmental structure of OIST and
orientation toward interdisciplinary research permits flexibility in
appointing applicants who are able to introduce new research areas or
enhance existing areas. Established research areas include genomics,
developmental biology, mathematical and computational biology, molecular and
cell sciences and neuroscience. New research areas include structural
biology, biological physics, biological chemistry, marine sciences, ecology
and evolutionary biology, and microbial and plant genetics.

At a time when worldwide support for research is increasingly risk-averse,
and grant funding places an ever-growing burden on faculty, OIST promotes
innovative research in a highly facilitating and supportive environment.
This is achievable because OIST has internal research funding, offers
outstanding central research facilities, and consults faculty on the design
of new laboratory space. Central research facilities at OIST include core
facilities for genomics, rodent vivarium, radioisotope use, electron
microscopy, and supercomputing facilities.

OIST is committed to being international with more than 50% of faculty and
researchers from outside Japan. The official language of OIST is English.
OIST is an equal opportunity, affirmative action employer and encourages
applications from women. More details regarding the aims of the search and
advantages of working at OIST are available in the Information for
Applicants in the application package that is downloadable from the website
(http://www.oist.jp/en/newsevent/careers/542-faculty-positions.html).
Applications should be submitted in accordance with the instructions in the
application package. Applications for the current search close 31, July
2010. Interviews will take place in late August/September, with a view to
making appointments early in 2011.

Please don't hesitate to contact me with any questions.
Alexander Mikheyev
Principal Investigator
Okinawa Institute of Science and Technology http://www.oist.jp/
Research Lab 1, Level D
1919-1 Tancha, Onna-son, Kunigami
Okinawa 904-2234
Japan


Re: [ECOLOG-L] Physiology Productivity Promises and BS Re: [ECOLOG-L] worlds authorities in sustainable ag/meat/ag ecology

2010-06-28 Thread Wayne Tyson
Monsanto's claims, as quoted by Cherubini, seem like Green Revolution all 
over again to me. In the corn example, it would seem that a reduction in 
ear production would be a disadvantage. Shifts in emphasis from leaves and 
stems to seed or fruit production might be more related to culture than 
genetics, but that has historically played a role in crop plant production. 
I have no guidelines; I am interested in Monsanto's. However, for the moment 
I'll settle for a ratio of total biomass to water, and whether or not the 
doubling claim is pure fantasy or if there is solid evidence or theoretical 
foundation behind it.


WT


- Original Message - 
From: malcolm McCallum malcolm.mccal...@herpconbio.org

To: ECOLOG-L@LISTSERV.UMD.EDU
Sent: Sunday, June 27, 2010 4:36 PM
Subject: Re: [ECOLOG-L] Physiology Productivity Promises and BS Re: 
[ECOLOG-L] worlds authorities in sustainable ag/meat/ag ecology



I am not sure if this fits your guidelines, but please let me know!
Plant breeding of corn species that did not devote energy to tassel
production and instead shiftking those resources to corn might be close.
Only problem was that the resistance to Southern Corn Blight was linked in
some way to producting tassels and ears!  So, the disease ravaged the US
corn crop when the weather was right and the strains were abandoned.  At
least that is my recollection!

Malcolm


On Sun, Jun 27, 2010 at 3:17 PM, Wayne Tyson landr...@cox.net wrote:


Please supply evidence that genetic engineering or any other method can
double the productivity of any species without increasing the amount of
water and nutrients, including a cogent explanation of just how this is
done.

WT


- Original Message - From: Paul Cherubini mona...@saber.net
To: ECOLOG-L@LISTSERV.UMD.EDU
Sent: Thursday, June 24, 2010 1:24 PM
Subject: Re: [ECOLOG-L] worlds authorities in sustainable ag/meat/ag
ecology


I would say the big biotech companies are the world's leading authorities
with regard to the issue of how we can feed the world in the coming
decades.

Example:
http://www.monsanto.com/responsibility/sustainable-ag/default.asp

Excerpts:

By 2050, say United Nations’ experts, our planet must double
food production to feed an anticipated population of 9.3 billion people.

By 2030, Monsanto commits to help farmers produce more and
conserve more by: Developing improved seeds that help farmers
double yields from 2000 levels for corn, soybeans, cotton, and
spring-planted canola, with a $10 million grant pledged to improve
wheat and rice yields.”

Paul Cherubini
El Dorado, Calif.







No virus found in this incoming message.
Checked by AVG - www.avg.com
Version: 8.5.439 / Virus Database: 271.1.1/2966 - Release Date: 06/27/10
06:35:00





--
Malcolm L. McCallum
Managing Editor,
Herpetological Conservation and Biology

1880's: There's lots of good fish in the sea  W.S. Gilbert
1990's:  Many fish stocks depleted due to overfishing, habitat loss,
  and pollution.
2000:  Marine reserves, ecosystem restoration, and pollution reduction
MAY help restore populations.
2022: Soylent Green is People!

Confidentiality Notice: This e-mail message, including any
attachments, is for the sole use of the intended recipient(s) and may
contain confidential and privileged information.  Any unauthorized
review, use, disclosure or distribution is prohibited.  If you are not
the intended recipient, please contact the sender by reply e-mail and
destroy all copies of the original message.






No virus found in this incoming message.
Checked by AVG - www.avg.com
Version: 8.5.439 / Virus Database: 271.1.1/2966 - Release Date: 06/27/10 
06:35:00


Re: [ECOLOG-L] field safety manual for mammal/herp/tick project

2010-06-28 Thread James J Roper
The manual is good, but there are a few small errors.

Tick rainthe manual says that ticks do not fall on passersby, but
indeed they do.  I have been colonized by ticks that way in both
Panama and Paraguay. In Paraguay, when the truck I was riding on went
under a tick infested branch of tree (actually, the preceding truck) the
ticks apparently sense the CO2 and dropped, landing on the people in the
back of the truck that followed.  It happened more than once and was
easily verified.

In Panama, I was sitting in the understory waiting while looking up with
binoculars.  Every now and then, I felt dust on my face.  I pulled out
my compass with mirror and discovered that the dust was ticks.  As I
plucked them from my face, their numbers were growing, on my face and
not by climbing to my face. Finally, I noticed that they were all over
my body, so I moved.

In the field, I have done the simple experiment.  Tick walks up arm or
leg or finger.  If you merely fan the tick with your hand (passing an
air current), they cling, but if you breathe or blow on it, the tick
often drops, presumably from smelling CO2.

Now I have not done this experiment with ticks everywhere, but
everywhere I have done it, the ticks respond the same way.

Cheers,

Jim

Diane S. Henshel wrote on 19-Jun-10 14:24:
 Thanks for a great start on a manual many will use!

   


Re: [ECOLOG-L] worlds authorities in sustainable ag/meat/ag ecology: an aside on -icides...

2010-06-28 Thread Chalfant, Brian
Interesting article about -icides relevant - if tangentially - to present 
course of discourse:

http://www.timesleader.com/news/Weed_killer_is_losing_ground_06-27-2010.html


-Original Message-
From: Ecological Society of America: grants, jobs, news 
[mailto:ecolo...@listserv.umd.edu] On Behalf Of Wayne Tyson
Sent: Monday, June 28, 2010 9:40 AM
To: ECOLOG-L@LISTSERV.UMD.EDU
Subject: Re: [ECOLOG-L] Physiology Productivity Promises and BS Re: [ECOLOG-L] 
worlds authorities in sustainable ag/meat/ag ecology


Monsanto's claims, as quoted by Cherubini, seem like Green Revolution all
over again to me. In the corn example, it would seem that a reduction in
ear production would be a disadvantage. Shifts in emphasis from leaves and
stems to seed or fruit production might be more related to culture than
genetics, but that has historically played a role in crop plant production.
I have no guidelines; I am interested in Monsanto's. However, for the moment
I'll settle for a ratio of total biomass to water, and whether or not the
doubling claim is pure fantasy or if there is solid evidence or theoretical
foundation behind it.

WT


- Original Message -
From: malcolm McCallum malcolm.mccal...@herpconbio.org
To: ECOLOG-L@LISTSERV.UMD.EDU
Sent: Sunday, June 27, 2010 4:36 PM
Subject: Re: [ECOLOG-L] Physiology Productivity Promises and BS Re:
[ECOLOG-L] worlds authorities in sustainable ag/meat/ag ecology


I am not sure if this fits your guidelines, but please let me know! Plant 
breeding of corn species that did not devote energy to tassel production and 
instead shiftking those resources to corn might be close.  Only problem was 
that the resistance to Southern Corn Blight was linked in some way to 
producting tassels and ears!  So, the disease ravaged the US corn crop when the 
weather was right and the strains were abandoned.  At least that is my 
recollection!

Malcolm


On Sun, Jun 27, 2010 at 3:17 PM, Wayne Tyson landr...@cox.net wrote:

 Please supply evidence that genetic engineering or any other method
 can double the productivity of any species without increasing the
 amount of water and nutrients, including a cogent explanation of just
 how this is done.

 WT


 - Original Message - From: Paul Cherubini
 mona...@saber.net
 To: ECOLOG-L@LISTSERV.UMD.EDU
 Sent: Thursday, June 24, 2010 1:24 PM
 Subject: Re: [ECOLOG-L] worlds authorities in sustainable ag/meat/ag
 ecology


 I would say the big biotech companies are the world's leading
 authorities with regard to the issue of how we can feed the world in
 the coming decades.

 Example:
 http://www.monsanto.com/responsibility/sustainable-ag/default.asp

 Excerpts:

 By 2050, say United Nations' experts, our planet must double food
 production to feed an anticipated population of 9.3 billion people.

 By 2030, Monsanto commits to help farmers produce more and conserve
 more by: Developing improved seeds that help farmers double yields
 from 2000 levels for corn, soybeans, cotton, and spring-planted
 canola, with a $10 million grant pledged to improve wheat and rice
 yields.

 Paul Cherubini
 El Dorado, Calif.



 --
 --



 No virus found in this incoming message.
 Checked by AVG - www.avg.com
 Version: 8.5.439 / Virus Database: 271.1.1/2966 - Release Date:
 06/27/10 06:35:00




--
Malcolm L. McCallum
Managing Editor,
Herpetological Conservation and Biology

1880's: There's lots of good fish in the sea  W.S. Gilbert
1990's:  Many fish stocks depleted due to overfishing, habitat loss,
   and pollution.
2000:  Marine reserves, ecosystem restoration, and pollution reduction
 MAY help restore populations.
2022: Soylent Green is People!

Confidentiality Notice: This e-mail message, including any attachments, is for 
the sole use of the intended recipient(s) and may contain confidential and 
privileged information.  Any unauthorized review, use, disclosure or 
distribution is prohibited.  If you are not the intended recipient, please 
contact the sender by reply e-mail and destroy all copies of the original 
message.






No virus found in this incoming message.
Checked by AVG - www.avg.com
Version: 8.5.439 / Virus Database: 271.1.1/2966 - Release Date: 06/27/10
06:35:00


[ECOLOG-L] GPS grid question -- replies!

2010-06-28 Thread L Quinn
Dear list,

I received a lot of great hints for marking a grid in the field using GPS 
methods. Thanks to everyone who replied off-list!! A few people asked me to 
share the replies, so I thought I'd compile them and post them here for all to 
see. 

Thanks again, all.

Lauren Quinn






Sent:
Fri 6/18/10 6:54 PM


To: 
lqu...@hotmail.com






You can probably create a track by walking the grid once, save it, 
and then reload it to use it as a template for where to walk again.  






Sent:
Fri 6/18/10 7:00 PM


To: 
L Quinn (lqu...@hotmail.com)






Hi Lauren, 
One 
thing to consider is the accuracy of the gps unit. The positional error 
associated with a garmin can be a couple meters, especially if you are 
moving around. If you are working on a fine scale you may want to stick 
with measuring tapes. Good luck on your project. 






Sent:
Fri 6/18/10 7:30 PM


To: 
lqu...@hotmail.com













Hello,

From my limited use of GPS units, I do not believe that 
you will achieve anywhere near the accuracy you desire, using a handheld
 Etrex. There are several factors to consider, and you would probably 
find the GPS solutions either too cumbersome or too expensive. I will 
leave it to the experts to advise you further on the model you would 
need to achieve that accuracy.

You would probably do better with 
getting good maps for wherever you go, and then using a compass 
(compensate for magnetic versus true north) and your GPS to navigate the
 area. If you are concerned about covering the same ground twice by 
mistake, you can use a marking system to show where you have been (we 
used toilet paper draped on low bushes in Minnesota. It's biodegradable 
and will disappear the first time it rains). I would concentrate more on
 the goal of the sampling system (achieve separation between 
samples/cover the entire area) rather than focusing on whether I was in 
exactly the right grid spot (unless that is the essential goal, hard to 
say without knowing more details).
One final tip. If you know the 
spacing, instead of using a measuring tape it may be quicker to 
pre-measure a length of rope (one that doesn't stretch or shrink when it
 gets wet) and use that in the field. Works better when you have a 
person on either end of the rope.
Also, consider an infra-red range 
finder.

Test your GPS in an open sports field. Walk the marked 
lines and see how accurate the resulting GPS track is. That will give 
you a rough idea of the accuracy you can expect.

Good luck!






Sent:
Fri 6/18/10 7:35 PM


To: 
lqu...@hotmail.com

Cc: 
ecolo...@listserv.umd.ed






Lauren,




It is possible to do what you are asking, but it is not easy. It 
would be easier to arrive at your starting location, project one 
waypoint in the direction you want to go (along a desired grid line), do
 a go to to the projected point, and walk offsets of 0m, 20, 40, etc. 
from the go to line. I suggest you read your garmin manual about these
 topics, as I could not explain all of this from scratch to a 
5-year-old.








Sent:
Fri 6/18/10 7:48 PM


To: 
L Quinn (lqu...@hotmail.com)






Dear Lauren,
 
I used to use a similar method for generating transects for surveying 
birds with an eTrex Legend.  I used Garmin's MapSource software (which 
is simple and inexpensive) to program routes and then would sync them 
with the GPS.  You could create a grid simply using a series of 
intersecting, straight-line routes.  I would also use a feature in the 
GPS (I think the eTrex can do this but I can't remember for sure) called 
project waypoint.  After marking a waypoint, you can use the editing 
tool for the waypoint and move the point by designating a starting 
point, a distance, and a bearing.  This was an easy way of creating 
transects on the fly.  Projecting a waypoint can be done anywhere as 
long as you have a reference point for your field site.  I'm not sure if 
that is clear or helpful or quite what you need.  If you would like 
further details or help, please let me know.
 






Sent:
Fri 6/18/10 8:10 PM


To: 
L Quinn (lqu...@hotmail.com)








Hi Lauren,



You can load lines onto your Garmin
unit as tracks -- the best way to do it is using a free program called
DNR Garmin created by Minnesota DNR (can download online).  If you
can use ArcGIS to generate a fishnet grid (XTools does this easily) 
shapefile
for your study area, you can bring this into DNRGarmin, then save it as
a track file with a .gpx extension.  This can 

Re: [ECOLOG-L] field safety manual for mammal/herp/tick project -- breath as a repellent

2010-06-28 Thread Warren W. Aney
Jim mentions how breathing or blowing on them can cause ticks to drop off
your body.  I have noticed this also works similarly with wasps and hornets.
If they try to share my outdoor meal, a little puff in their direction seems
to repel them more definitively than arm and hand waving. Maybe they
associate my bad breath (or CO2) with a potential predator. Has anybody else
noticed this?  I haven't tried this with mosquitoes, but it probably would
have the opposite effect -- they would associate CO2 with a breathing source
of blood.

Warren W. Aney
Tigard, Oregon

-Original Message-
From: Ecological Society of America: grants, jobs, news
[mailto:ecolo...@listserv.umd.edu] On Behalf Of James J Roper
Sent: Monday, 28 June, 2010 08:24
To: ECOLOG-L@LISTSERV.UMD.EDU
Subject: Re: [ECOLOG-L] field safety manual for mammal/herp/tick project

The manual is good, but there are a few small errors.

Tick rainthe manual says that ticks do not fall on passersby, but
indeed they do.  I have been colonized by ticks that way in both
Panama and Paraguay. In Paraguay, when the truck I was riding on went
under a tick infested branch of tree (actually, the preceding truck) the
ticks apparently sense the CO2 and dropped, landing on the people in the
back of the truck that followed.  It happened more than once and was
easily verified.

In Panama, I was sitting in the understory waiting while looking up with
binoculars.  Every now and then, I felt dust on my face.  I pulled out
my compass with mirror and discovered that the dust was ticks.  As I
plucked them from my face, their numbers were growing, on my face and
not by climbing to my face. Finally, I noticed that they were all over
my body, so I moved.

In the field, I have done the simple experiment.  Tick walks up arm or
leg or finger.  If you merely fan the tick with your hand (passing an
air current), they cling, but if you breathe or blow on it, the tick
often drops, presumably from smelling CO2.

Now I have not done this experiment with ticks everywhere, but
everywhere I have done it, the ticks respond the same way.

Cheers,

Jim

Diane S. Henshel wrote on 19-Jun-10 14:24:
 Thanks for a great start on a manual many will use!

   


[ECOLOG-L] POSITION: REGIONAL SCIENCE COORDINATOR

2010-06-28 Thread Brian Mccarthy
The American Chestnut Foundation is seeking a Regional Science  
Coordinator, which supports the science-related activities of TACF  
chapters in MD, VA, and WV and cooperates and participates with the  
other regional science coordinators and with the chief scientist of  
TACF. The coordinator supports and advises on chapter breeding  
programs following accepted breeding-program protocol, including such  
activities as pollinating, seed collecting, harvesting, storing seeds,  
selecting planting sites, planning plantings, distributing seeds,  
directing the planting and maintenance of chestnut trees, inoculating  
and selecting trees, and record keeping.


Details regarding the application process, specific duties, and  
qualifications can be found at:

http://ctacf.org/index.cfm/2010/6/28/TACF-Regional-Science-Coordinator--MidAtlantic-Regional


Brian C. McCarthy, Ph.D.
Professor of Forest Ecology and Chair
Dept. of Environmental  Plant Biology
317 Porter Hall
Ohio University
Athens, OH  45701-2979  USA

T: 740-593-1615
F: 740-593-1130
E: mccar...@ohio.edu
W: 
http://www.plantbio.ohiou.edu/index.php/directory/faculty_page/brian_mccarthy/
Skype: bcmccarthyOHIO


[ECOLOG-L] Job Posting: Bioacoustics Research Program, Cornell Univ. - Research Analyst

2010-06-28 Thread Aaron N. Rice

*Research Analyst (Technician IV)*

The Bioacoustics Research Program (BRP) at Cornell University?s Lab of 
Ornithology is looking to fill multiple positions at the Research 
Analyst level. BRP integrates across the fields of animal behavior, 
ecology, software engineering and electrical engineering in order to 
understand how animals produce, perceive, and use sound within their 
natural environment. BRP collects and analyzes acoustic data from oceans 
around the world to understand the spatial and temporal occurrence of 
marine animal species (primarily cetaceans) based on the acoustic 
detections of their sounds. Research Analysts perform acoustic analysis 
of sound recordings, which involves organizing and managing large sets 
of acoustic data, and analyzing these data using specialized acoustical 
software. Research Analysts will also collaborate with other biologists 
as well as signal processing engineers to develop and expand BRP?s 
software tools, and generate figures and materials related to ambient 
sound analysis and its impact on marine mammals and other species. 
Opportunities will exist for participating in the generation of 
technical reports and peer-reviewed publications, occasionally training 
undergraduate students, and participating in BRP's Sound Analysis 
Workshop, which trains researchers from around the world in sound analysis.


Applicants must have a Bachelor's Degree, and a degree in biology is 
preferred. For detailed information on the required and preferred 
qualifications, and the application procedure, please see the Cornell HR 
website (http://hr.cornell.edu/jobs/positions.html), and search for 
position 12734.  For any questions about the position, please contact 
Aaron Rice (ar...@cornell.edu).


/Cornell// University is an Affirmative Action/Equal Opportunity 
Employer and Educator./


--
Aaron N. Rice, Ph.D.
Science Director
Bioacoustics Research Program
Cornell Laboratory of Ornithology
Cornell University
159 Sapsucker Woods Rd.
Ithaca, NY 14850-1999

Email:ar...@cornell.edu
Web:http://www.nbb.cornell.edu/neurobio/aaronrice


[ECOLOG-L] Graduate positions available in aquatic insect ecology (Spring 2011)

2010-06-28 Thread Donald Yee
Graduate positions available in aquatic insect ecology (Spring 2011)

The Yee Lab

UNIVERSITY OF SOUTHERN MISSISSIPPI

Applicants are invited for up to two highly motivated students (Ph.D. or 
M.S.) (start date January 2011) in the lab of Donald Yee.  The positions 
can focus on any aspect of the ecology of insects in temporary water, 
although our current focus is on mosquitoes and predaceous diving 
beetles.  Current and past research topics include larval competition, 
invasion ecology, predation, species diversity, and life-history trade-
offs.  The Yee lab uses a combination of field sampling, field and 
laboratory experiments, and statistical modeling to answer ecological 
questions and to test ecological theory.  Other research topics may be 
considered, especially at the Ph.D. level, although aquatic insect 
communities or populations should be a focus.  Prior field experience and 
coursework in ecology, entomology, and statistics is preferred but not 
essential.

More information about the Yee lab can be found at:  
http://ocean.otr.usm.edu/~w777157/

Full tuition scholarships for successful applicants are provided.  Basic 
and major medical health coverage is provided to fulltime graduate 
students in good standing academically.  Support is provided by teaching 
assistantships and research assistantships when available.  

Requirements:  Although the Department of Biological Sciences does not 
have a minimum set of scores to be eligible for entrance into the graduate 
program, potential applicants should expect to have a minimum GPA of 3.00 
and have taken the GRE before application.  For more information on 
admission follow this link:  http://www.usm.edu/biology/graduate.htm

Deadline for Spring 2011 applications is 15 October 2010.

The University of Southern Mississippi, a Carnegie Research High Activity 
institution with 15,000 students, is located in Hattiesburg, Mississippi, 
near the Gulf Coast and has abundant opportunities for outdoor 
recreation.  Hattiesburg is the medical, commercial and cultural center of 
southern Mississippi and is ranked in the top five small metropolitan 
areas in the United States.  The Department of Biological Sciences is 
comprised of about thirty faculty and offers baccalaureate, Master of 
Science and Ph.D. degrees.  Over 60 graduate students currently pursue 
masters and doctoral degrees.  Further information about the department 
may be found at:  http://www.usm.edu/biology/.   

To inquire, submit (via e-mail) a cover letter with a brief (~ one page) 
review of your research 
experience, interests and goals, CV, and contact for three academic 
references to:

donald@usm.edu

Donald A. Yee, Ph.D.
Assistant Professor
Department of Biological Sciences 
University of Southern Mississippi
Hattiesburg, MS 39406-0001


[ECOLOG-L] Glacier National park name change?

2010-06-28 Thread Neil Dawe
There's a *g*ood *d*arn *p*urpose to consider changing the name of Glacier
National Park within the next decade; read about it in the latest essay on *The
Daly News*:
http://steadystate.org/what-do-we-do-with-gdp/

Have a good day people!

Neil

Neil K. Dawe, Director
Center for the Advancement of the Steady State Economy
www.steadystate.org


Re: [ECOLOG-L] Humans in the definition of ecosystems

2010-06-28 Thread Ajay Sharma
I would suggest reading O'Neill, Robert V. (2001). Is It Time to Bury the
Ecosystem Concept? (With Full Military Honors, of Course!). *Ecology*, 82:
3275-3284.
The eminent authors concludes in the article there is need to make revisions
in the concept of ecosystem. Especially, as far as the role and place of
humans is concerned. He points out that the humans are the ultimate invasive
species in the ecosystem that alters both the biotic and abiotic components.
A must read and very interesting article.

Ajay Sharma
PhD Student,
SFRC, UF, Gainesville, FL

On Sat, Jun 26, 2010 at 10:19 PM, Daniel A Fiscus dafis...@frostburg.eduwrote:

 Fabrice,

 An interesting and evocative question and dilemma! I should really think on
 it over time and reply in depth...but some thoughts of the top instead...

 I agree with other repliers that the definition really does not exclude
 humans per se...unless we focus on the special aspect of your ID of humans
 as special animals. So I think the CBD definition is OK in the broadest
 sense of all animals.

 But I also agree that humans are special animals...so what could we change?

 My core idea of ecosystem as I remember Tansley to have originally coined
 it mentioned and emphasized reciprocal influence between the abiotic and
 biotic realms. And I think it a reasonable extension to also suggest the
 definition so far includes a sense of a balanced reciprocity...not
 necessarily equilibrium, stasis, homeostasis or simple stability...but still
 in general a kind of equal weighting, value, importance, dominance, or
 causal driving by the biotic and abiotic realms.

 If we tried to address what is special about humans as animals, in this
 context of ecosystem as a functional biotic-abiotic unit...what to
 emphasize?

 One option would be to say that when humans enter the integrated functional
 whole of an ecosystem, the relationship is no longer reciprocal or balanced
 between biotic and abiotic realms. This does not necessarily have to mean
 that this change is bad, just that it is different from ecosystems without
 humans. The change would be compatible with the idea of the anthropocene era
 in which humans are the main driving force of change...even geologic,
 atmospheric, biogeochemical, species extinctions, etc. changes...on the
 planet. Another very general analogy would be to say that without humans the
 organisms and communities within ecosystems (biotic) adapt themselves mainly
 to survival needs as defined by abiotic changes, but humans (biotic) adapt
 (alter) the abiotic (and biotic) environment to our own needs. This is
 grossly general...and not even a clearly separable difference between humans
 and other species, especially those studied as ecosystem engineers, but it
 is a rough start.

 So...a revised approach would be to leave the definition of ecosystem as it
 is (or one of the other classic or widely used versions by Odum and others),
 but to add some modifier to another term or type of ecosystem and define
 that one differently. This might be coupled human-natural ecosystems or
 human-dominated ecosystems or human ecosystems or ecosystems with
 humans.

 But I think you open a can of worms that has to remain fuzzy and
 open-ended, because I think it an open question as to whether we humans can
 continue this lopsided relationship and continue to alter the environment to
 our needs and wishes. If the pendulum swings back as we reach the
 environmental limits of the planet, then the old and original ecosystem
 definition may be fine. If we find some way to transcend these planetary
 limits or boundaries...then we humans really are special enough to require
 an expanded definition of ecosystem.

 Some thoughts...would be fun to discuss more...

 Dan



 --
 Dan Fiscus
 Assistant Professor
 Biology Department
 Frostburg State University
 308 Compton Science Center
 Frostburg, MD 21532 USA
 301-687-4170
 dafis...@frostburg.edu



 -Original Message-
 From: Ecological Society of America: grants, jobs, news on behalf of
 Fabrice De Clerck
 Sent: Fri 6/25/2010 11:20 AM
 To: ECOLOG-L@LISTSERV.UMD.EDU
 Subject: [ECOLOG-L] Humans in the definition of ecosystems

  Dear Friends,

 An environmental economist colleague of mine is disappointed with the CBD
 definition of ecosystems which gives the impression that only pristine areas
 are ecosystems. Can anyone point us to a more recent definition of
 ecosystems that explicitly includes humans as an integral part of the
 definition?

 Here is the original question:

 The CBD defines ecosystems as a dynamic complex of plant, animal and
 micro-organism communities and their non-living environment interacting as a
 functional unit.

 I find this boring, as it leaves us humans, as special animals, out of the
 picture. When you read it, it is easy to think of pristine environments. Has
 there been any reaction or correction of this definition? I need an
 authoritative quote that balances the CBD´s

 All reactions welcome, 

Re: [ECOLOG-L] worlds authorities in sustainable ag/meat/ag ecology

2010-06-28 Thread Sarah Jack Hinners
The Land Institute in Salina Kansas, and other researchers at 
various universities, are working on perennial cropping systems that would 
address many of the ecological problems with modern agriculture. See an article 
by Jerry Glover (a Land Institute researcher) et al. in the latest issue of 
Science: Increased food and ecosystem security via perennial grains. 
I would agree with previous posts that Monsanto and their ilk have no interest 
whatsoever in sustainable agriculture per se but they give it lip service - has 
anyone heard their ads on NPR? Talk about propaganda. They are interested 
in making money, and they invest considerable money and effort in driving 
farmers who don't use their products out of business. If small family farms are 
in any way a part of a sustainable future for agriculture, 
agro-business multinationals are often directly counter to the interests of 
small family farms, although they would say otherwise of course.
cheers,
Sarah
 Sarah Jack Hinners, PhD
Cooperative Institute for Research in Environmental Sciences (CIRES)
Campus Box 216
University of Colorado
Boulder, CO 80309 





[ECOLOG-L] Available: Ecology (1960-1977), indexes, books

2010-06-28 Thread RICHARD LINDEBORG
I am looking for a home for  a long run of the journal Ecology (1960 through 
1977), with some shorter runs and indexes.  A detailed list of materials and 
conditions is available on request. 
 
These items are available for the cost of the boxes and the mailing.  There are 
3 boxes at $20 a box, mailed media rate within the contiguous 48 states.
 
Also
 
A long run of the Journal of Mammalogy (1953-1996) and some shorter runs 
earlier and later, including 1928-1932 and 1946-48.  
 
Hardbound indexes for the Journal of Mammalogy 1919 -1989.
 
About 300 books in Anatomy, Ecology, Zoology, Mammalogy and other fields of 
biology (and Statistics) from 1905 through 1980.  List available.
 
First choice to institutional requestors.
 
All available for the cost of boxes and mailing.

 

 

Richard Lindeborg

ralindeb...@q.com