Re: [O] source block variable expansion
Hi Rick, Rick Frankel wrote: Since org-mode v7.8, editing a code block in an indirect buffer causes any referenced code blocks to be executed. While this behavior is desired for viewing code in an indirect buffer (as the behavior has always been) it is not for editing (esp. if the named block takes a long time to run). Given a referenced source block: #+name: var #+begin_src elisp you shouldn't see this in the mini-buffer #+end_src When editing the followiing code block (via =C-c '=), the above block (=var=) will be executed. The message =executing Elisp code block (var)...= will appear in the =*Message*= buffer and the message above will appear in the mini-buffer. #+name: edit-test(var=var) #+begin_src perl $var; #+end_src Just FYI, note that this variable assignment is/shoud be deprecated: you have to use: #+name: edit-test #+headers: :var var=var #+begin_src perl $var; #+end_src or #+name: edit-test #+begin_src perl :var var=var $var; #+end_src Best regards, Seb -- Sebastien Vauban
Re: [O] Org-edit-special and C-x C-s strange behavior
Leo Alekseyev dnqu...@gmail.com writes: Eric S Fraga e.fr...@ucl.ac.uk writes: What version of org are you using? I ask because I used to experience the annoyance you describe a while back; more recently (since at least a few months ago), hitting C-x C-s no longer has any negative impact: it saves the file, or at least appears to. You still have to C-c ' to get back to the full buffer, mind you, but that's better, IMO, than changing the behaviour of such a fundamental key binding as C-x C-s. It appears that this bug is Emacs-version dependent: it functions as you describe with 23.2, but the buffer gets buried (with an error message basic-save-buffer: Wrong type argument: stringp, nil) in 24.0.92. Org mode is the current git HEAD. I tried to step through basic-save-buffer in edebug, but I couldn't catch the error (I'm not very experienced with edebug). Can someone test this on Emacs 24 and confirm what I'm seeing? I am using 24.0.92 and I have no problems at all (just tried right now). One difference, however, could be the window configurations we use. Specifically, I have (setq org-src-window-setup (quote current-window)) in my configuration: the special editing window replaces the current window entirely. When I hit C-x C-s, the buffer is saved but nothing changes (nothing is buried, etc.). Maybe you have the default configuration which is to reorganize-frame and maybe that is where the problem is? -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.92.1 : using Org-mode version 7.8.03 (release_7.8.03.106.gc835)
Re: [O] Including source when exporting in PDF
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
On 12/01/12 03:06, Frozenlock wrote:
To include multiple files, I export all of the required files
before the PDF creation and zip them. This way, I only need to
include a single zip file.
Good idea.
#+BEGIN_SRC emacs-lisp :exports none ;; various exports
(save-window-excursion (org-export-as-ascii
org-export-headline-levels)) (save-window-excursion
(org-export-as-html org-export-headline-levels))
;;zip the required files (let ((filename (file-name-sans-extension
(file-name-nondirectory (buffer-file-name) (shell-command
(concat zip filename .zip (mapconcat '(lambda (arg) arg)
(remove-if '(lambda (filename) (string-match
\\.$\\|\\.pdf$\\|\\.atfi$\\|# filename)) (directory-files
(file-name-directory (buffer-file-name #+END_SRC
(I've added this code in a babel block to evaluate just before the
PDF export.)
I actually did not want to fiddle with the file names, as it is to
easy to forget some: this concerns in my case literate programming of
a simulation model in R, resul;ting in several files of different
extensions - it is to easy to forget one.
If I tangle, I get all the names of the tangled files, but I do not
know how I can feed them into the zip file.
As you can see, I make sure I don't include a previous PDF, or any
other useless file.
True.
If you wish to add only a single type of file, simply replace
remove-if by remove-if-not and change the value in the
string-match function. For example,
\\.$\\|\\.pdf$\\|\\.atfi$\\|# would become \\.lisp$ to include
all your exported lisp files.
Hope this helps!
By the way, I can't get the code block to be evaluated
automatically when I export to PDF, any clue on how to do that?
I assume, it is caused by the :exports none - so no evaluation is done
on export. Try changing it to :exports result and then generate an
empty result, or a list of files included in the zip file.
Cheers,
Rainer
On Wed, Jan 11, 2012 at 10:28 AM, Rainer M Krug
r.m.k...@gmail.com wrote: On 06/01/12 08:45, Eric Schulte wrote:
Frozenlock frozenl...@gmail.com writes:
I am a strong advocate in keeping the source of
everything.
However, Â a source can easily be lost if it doesn't follow
the document. In LaTeX, there's a package to attach a file
to a PDF (like when you attach a file to an email). By
doing so, the source will follow the PDF even if the common
reader have no clue what it's for, or even how to use it.
This sounds like a great Reproducible Research practice.
Here is how I attach my org source to every document I
export to PDF:
;; Include the source file for every exported PDF
(org-mode) (eval-after-load org-exp '(defadvice
org-export-as-latex (around org-export-add-source-pdf
activate) Add the source (org file) to the resulting pdf
file (let ((filename (buffer-name))) ad-do-it ;do the
function (let ((latex-buffer ad-return-value)) (set-buffer
latex-buffer) (while (re-search-forward
usepackage{.+} nil t)); go to the end of packages
(insert \n\\usepackage{attachfile2}); the package needed
to attach files (when (re-search-forward
end{document} nil t) (forward-line -1) (insert
(concat \\vfill\n \\footnotesize\n The source of this
document is an Org-Mode file attached here:
\n\\attachfile { filename }))) (save-buffer)
This is by no mean a patch, but rather a quick hack.
Perhaps someone with a working knowledge of the org-export
could find a way to add a source option?
I think this practice may not actually require any changes to
the Org-mode core. Â The attached small Org-mode file will
attach itself to pdf exports using only features already
present in Org-mode.
Following this idea - how can I easily attach all files created by
tangling? Is there a programmatic way, without having to specify
them manually?
Thanks,
Rainer
Thanks for sharing this idea!
Cheers!
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D):+49 - (0)3 21 21 25 22 44
email: rai...@krugs.de
Skype: RMkrug
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Re: [O] Org-edit-special and C-x C-s strange behavior
Eric S Fraga e.fr...@ucl.ac.uk writes: Leo Alekseyev dnqu...@gmail.com writes: Eric S Fraga e.fr...@ucl.ac.uk writes: What version of org are you using? I ask because I used to experience the annoyance you describe a while back; more recently (since at least a few months ago), hitting C-x C-s no longer has any negative impact: it saves the file, or at least appears to. You still have to C-c ' to get back to the full buffer, mind you, but that's better, IMO, than changing the behaviour of such a fundamental key binding as C-x C-s. It appears that this bug is Emacs-version dependent: it functions as you describe with 23.2, but the buffer gets buried (with an error message basic-save-buffer: Wrong type argument: stringp, nil) in 24.0.92. Org mode is the current git HEAD. I tried to step through basic-save-buffer in edebug, but I couldn't catch the error (I'm not very experienced with edebug). Can someone test this on Emacs 24 and confirm what I'm seeing? I am using 24.0.92 and I have no problems at all (just tried right now). One difference, however, could be the window configurations we use. Specifically, I have (setq org-src-window-setup (quote current-window)) in my configuration: the special editing window replaces the current window entirely. When I hit C-x C-s, the buffer is saved but nothing changes (nothing is buried, etc.). Maybe you have the default configuration which is to reorganize-frame and maybe that is where the problem is? Thanks for this Eric! I can confirm, that the problem does not occur with this setting here, too (emacs 24.0.92 as well).
Re: [O] inline src_R also in latex src block
Andreas Leha andreas.l...@med.uni-goettingen.de writes:
yes, that should work. Try to export the following several times. The
first number should not change.
(note: maybe you'd have to execute the inner_test_cached once on your
system)
#+name: inner_test_cached
#+begin_src R :cache yes :exports none
rnorm(1)
#+end_src
#+results[dbeb7280be41fdc949815808cf601a6d01a400bb]: inner_test_cached
: 1.12399967834262
#+name: inner_test_not_cached
#+begin_src R :exports none
rnorm(1)
#+end_src
#+results: inner_test_not_cached
: -0.562660468468834
#+name: test
#+begin_src latex :noweb yes
\begin{equation}
inner_test_cached()
!=
inner_test_not_cached()
\end{equation}
#+end_src
Thanks for the testing code. Having R and LaTeX inside org this way is
just pure fun.
Michael
[O] LaTeX export: Keep point position in TeX file
Hello everyone, The way I am now doing LaTeX export is that I have the exported tex buffer below the org buffer. When I do an export via `C-c C-e l' the .tex buffer gets updated, but point jumps to beginning of buffer instead of staying where it was. (How) Can I changed that so point stays near where it was before I exported again? Best Regards, Michael
[O] Synctex -- Syncorg?
Hello Everyone, I am interested whether something like synctex search and inverse search can be cooked up to work with org-mode. The codename `syncorg' was used in this conversation [1]. Would this be hard to implement? Just curious. Kind Regards, Michael Footnotes: [1] http://lists.gnu.org/archive/html/emacs-orgmode/2010-08/msg01253.html
[O] Rsquared for reproductible research
Following on from an old thread about self-configuring org files for reproducible research, R users might be interested to see the following web site which is exactly what I was thinking of for org mode (but of course, works only for R packages.) http://rsquared.stat.uni-muenchen.de/index.rhtml Stephen
[O] Bug: exporting ical files from read-only buffers [7.8.03 (release_7.8.03.112.g8861)]
I've found a small bug with exporting ical files from read-only org buffers. Create a simple buffer, e.g.: * test1 2012-01-12 Thu and then hit C-x C-q to make the buffer read-only. Then do C-c C-e i to export an ical file. You get an error that the buffer is read-only. I think this is due to the call to org-refresh-category-properties, which can't update text proprties. My workaround is to do: (setq inhibit-read-only nil) so that text properties can be added to read-only buffers. This could be done locally within the ical export functions if others thought sensible, for which I can send a patch if desired. Stephen -- Emacs : GNU Emacs 23.3.1 (x86_64-pc-linux-gnu, GTK+ Version 2.24.5) of 2011-08-14 on allspice, modified by Debian Package: Org-mode version 7.8.03 (release_7.8.03.112.g8861)
Re: [O] LaTeX export: Keep point position in TeX file
Michael Bach pha...@gmail.com writes: Hello everyone, The way I am now doing LaTeX export is that I have the exported tex buffer below the org buffer. When I do an export via `C-c C-e l' the .tex buffer gets updated, but point jumps to beginning of buffer instead of staying where it was. (How) Can I changed that so point stays near where it was before I exported again? Best Regards, Michael I think this behaviour arises because the exporter exports to a buffer which it first empties. So the behaviour you see is very different from when Emacs reverts a buffer when the file changes out from under it. If so, I suggest you could achieve what you want by using the org-export-* hooks to, for instance, save current position before export and then jump to that position after export? Maybe org-export-first-hook and org-export-latex-final-hook could be used? Untried and obviously untested! And likely beyond my elisp capabilities so I'd be very keen on seeing a solution. This behaviour has also bothered me (well, very minor irritation) for a long time as I often export to latex when debugging the export to PDF. HTH, eric -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.92.1 : using Org-mode version 7.8.03 (release_7.8.03.106.gc835)
Re: [O] Bug: exporting ical files from read-only buffers [7.8.03 (release_7.8.03.112.g8861)]
Stephen Eglen s.j.eg...@damtp.cam.ac.uk writes: I've found a small bug with exporting ical files from read-only org buffers. Create a simple buffer, e.g.: * test1 2012-01-12 Thu and then hit C-x C-q to make the buffer read-only. Then do C-c C-e i to export an ical file. You get an error that the buffer is read-only. I think this is due to the call to org-refresh-category-properties, which can't update text proprties. My workaround is to do: (setq inhibit-read-only nil) so that text properties can be added to read-only buffers. This could be done locally within the ical export functions if others thought sensible, for which I can send a patch if desired. Could this be done more generally? I think I've run into this for other export targets as well, although it may be my memory that is faulty here. I use RCS for version control for standalone files and often have files read-only from which I want to export. Thanks, eric -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.92.1 : using Org-mode version 7.8.03 (release_7.8.03.106.gc835)
Re: [O] Bug: exporting ical files from read-only buffers [7.8.03 (release_7.8.03.112.g8861)]
Could this be done more generally? I think I've run into this for other export targets as well, although it may be my memory that is faulty here. I use RCS for version control for standalone files and often have files read-only from which I want to export. I also use RCS, which is how I got caught out today (trying to set up Eric's neat guide for gettting org-ical- google calendar; thanks for that Eric.) Before sending the bug, I tried exporting to pdf, which worked fine; what other exporters do you use? Stephen
Re: [O] Bug: exporting ical files from read-only buffers [7.8.03 (release_7.8.03.112.g8861)]
Stephen Eglen s.j.eg...@damtp.cam.ac.uk writes: Could this be done more generally? I think I've run into this for other export targets as well, although it may be my memory that is faulty here. I use RCS for version control for standalone files and often have files read-only from which I want to export. I also use RCS, which is how I got caught out today (trying to set up Eric's neat guide for gettting org-ical- google calendar; thanks for that Eric.) Before sending the bug, I tried exporting to pdf, which worked fine; what other exporters do you use? Stephen Mostly, I export to PDF but also less frequently to HTML, ODT and ICAL... I had imagined this to be a generic issue as I could not imagine that there would be anything special about exporting to ICAL... I have just tried a read-only document I have and everything has worked fine. Strange. Definitely faulty (wetware) memory; time for a RAM upgrade ;-) Apologies for the noise. And you're very welcome, by the way! -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.92.1 : using Org-mode version 7.8.03 (release_7.8.03.106.gc835)
Re: [O] Org-edit-special and C-x C-s strange behavior
On Thu, Jan 12, 2012 at 4:14 AM, Andreas Leha andreas.l...@med.uni-goettingen.de wrote: Eric S Fraga e.fr...@ucl.ac.uk writes: Leo Alekseyev dnqu...@gmail.com writes: Eric S Fraga e.fr...@ucl.ac.uk writes: What version of org are you using? I ask because I used to experience the annoyance you describe a while back; more recently (since at least a few months ago), hitting C-x C-s no longer has any negative impact: it saves the file, or at least appears to. You still have to C-c ' to get back to the full buffer, mind you, but that's better, IMO, than changing the behaviour of such a fundamental key binding as C-x C-s. It appears that this bug is Emacs-version dependent: it functions as you describe with 23.2, but the buffer gets buried (with an error message basic-save-buffer: Wrong type argument: stringp, nil) in 24.0.92. Org mode is the current git HEAD. I tried to step through basic-save-buffer in edebug, but I couldn't catch the error (I'm not very experienced with edebug). Can someone test this on Emacs 24 and confirm what I'm seeing? I am using 24.0.92 and I have no problems at all (just tried right now). One difference, however, could be the window configurations we use. Specifically, I have (setq org-src-window-setup (quote current-window)) Yes, this works. It's also a more sensible default. However, it doesn't change the fact that there's a bug, it just switches to a case where the bug isn't triggered :)
Re: [O] Including source when exporting in PDF
The code block I previously sent only require you to specify which
_extension_ you want or don't want. No need to include any specific
filename (other than the .zip file in the latex include command).
Am I to understand you want something to include *all and only* tangled files?
--
I tried :exports result with no success. I'll try to send a minimum
working example shortly.
On Thu, Jan 12, 2012 at 4:11 AM, Rainer M Krug r.m.k...@gmail.com wrote:
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
On 12/01/12 03:06, Frozenlock wrote:
To include multiple files, I export all of the required files
before the PDF creation and zip them. This way, I only need to
include a single zip file.
Good idea.
#+BEGIN_SRC emacs-lisp :exports none ;; various exports
(save-window-excursion (org-export-as-ascii
org-export-headline-levels)) (save-window-excursion
(org-export-as-html org-export-headline-levels))
;;zip the required files (let ((filename (file-name-sans-extension
(file-name-nondirectory (buffer-file-name) (shell-command
(concat zip filename .zip (mapconcat '(lambda (arg) arg)
(remove-if '(lambda (filename) (string-match
\\.$\\|\\.pdf$\\|\\.atfi$\\|# filename)) (directory-files
(file-name-directory (buffer-file-name #+END_SRC
(I've added this code in a babel block to evaluate just before the
PDF export.)
I actually did not want to fiddle with the file names, as it is to
easy to forget some: this concerns in my case literate programming of
a simulation model in R, resul;ting in several files of different
extensions - it is to easy to forget one.
If I tangle, I get all the names of the tangled files, but I do not
know how I can feed them into the zip file.
As you can see, I make sure I don't include a previous PDF, or any
other useless file.
True.
If you wish to add only a single type of file, simply replace
remove-if by remove-if-not and change the value in the
string-match function. For example,
\\.$\\|\\.pdf$\\|\\.atfi$\\|# would become \\.lisp$ to include
all your exported lisp files.
Hope this helps!
By the way, I can't get the code block to be evaluated
automatically when I export to PDF, any clue on how to do that?
I assume, it is caused by the :exports none - so no evaluation is done
on export. Try changing it to :exports result and then generate an
empty result, or a list of files included in the zip file.
Cheers,
Rainer
On Wed, Jan 11, 2012 at 10:28 AM, Rainer M Krug
r.m.k...@gmail.com wrote: On 06/01/12 08:45, Eric Schulte wrote:
Frozenlock frozenl...@gmail.com writes:
I am a strong advocate in keeping the source of
everything.
However, Â a source can easily be lost if it doesn't follow
the document. In LaTeX, there's a package to attach a file
to a PDF (like when you attach a file to an email). By
doing so, the source will follow the PDF even if the common
reader have no clue what it's for, or even how to use it.
This sounds like a great Reproducible Research practice.
Here is how I attach my org source to every document I
export to PDF:
;; Include the source file for every exported PDF
(org-mode) (eval-after-load org-exp '(defadvice
org-export-as-latex (around org-export-add-source-pdf
activate) Add the source (org file) to the resulting pdf
file (let ((filename (buffer-name))) ad-do-it ;do the
function (let ((latex-buffer ad-return-value)) (set-buffer
latex-buffer) (while (re-search-forward
usepackage{.+} nil t)); go to the end of packages
(insert \n\\usepackage{attachfile2}); the package needed
to attach files (when (re-search-forward
end{document} nil t) (forward-line -1) (insert
(concat \\vfill\n \\footnotesize\n The source of this
document is an Org-Mode file attached here:
\n\\attachfile { filename }))) (save-buffer)
This is by no mean a patch, but rather a quick hack.
Perhaps someone with a working knowledge of the org-export
could find a way to add a source option?
I think this practice may not actually require any changes to
the Org-mode core. Â The attached small Org-mode file will
attach itself to pdf exports using only features already
present in Org-mode.
Following this idea - how can I easily attach all files created by
tangling? Is there a programmatic way, without having to specify
them manually?
Thanks,
Rainer
Thanks for sharing this idea!
Cheers!
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: rai...@krugs.de
Skype: RMkrug
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Version: GnuPG v1.4.11 (GNU/Linux)
Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
iEUEARECAAYFAk8Oo7UACgkQoYgNqgF2egpg9wCfTq04zAVki+Oh1g97/C3FERf3
Re: [O] Including source when exporting in PDF
On 12 January 2012 14:54, Frozenlock frozenl...@gmail.com wrote:
The code block I previously sent only require you to specify which
_extension_ you want or don't want. No need to include any specific
filename (other than the .zip file in the latex include command).
Am I to understand you want something to include *all and only* tangled files?
Yes - and the files do have different extensions (e.g. .R, .sh, .sub,
none) and are not tangled necessarily in a specific directory.
and the original org file, but that is not a problem.
Rainer
--
I tried :exports result with no success. I'll try to send a minimum
working example shortly.
On Thu, Jan 12, 2012 at 4:11 AM, Rainer M Krug r.m.k...@gmail.com wrote:
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
On 12/01/12 03:06, Frozenlock wrote:
To include multiple files, I export all of the required files
before the PDF creation and zip them. This way, I only need to
include a single zip file.
Good idea.
#+BEGIN_SRC emacs-lisp :exports none ;; various exports
(save-window-excursion (org-export-as-ascii
org-export-headline-levels)) (save-window-excursion
(org-export-as-html org-export-headline-levels))
;;zip the required files (let ((filename (file-name-sans-extension
(file-name-nondirectory (buffer-file-name) (shell-command
(concat zip filename .zip (mapconcat '(lambda (arg) arg)
(remove-if '(lambda (filename) (string-match
\\.$\\|\\.pdf$\\|\\.atfi$\\|# filename)) (directory-files
(file-name-directory (buffer-file-name #+END_SRC
(I've added this code in a babel block to evaluate just before the
PDF export.)
I actually did not want to fiddle with the file names, as it is to
easy to forget some: this concerns in my case literate programming of
a simulation model in R, resul;ting in several files of different
extensions - it is to easy to forget one.
If I tangle, I get all the names of the tangled files, but I do not
know how I can feed them into the zip file.
As you can see, I make sure I don't include a previous PDF, or any
other useless file.
True.
If you wish to add only a single type of file, simply replace
remove-if by remove-if-not and change the value in the
string-match function. For example,
\\.$\\|\\.pdf$\\|\\.atfi$\\|# would become \\.lisp$ to include
all your exported lisp files.
Hope this helps!
By the way, I can't get the code block to be evaluated
automatically when I export to PDF, any clue on how to do that?
I assume, it is caused by the :exports none - so no evaluation is done
on export. Try changing it to :exports result and then generate an
empty result, or a list of files included in the zip file.
Cheers,
Rainer
On Wed, Jan 11, 2012 at 10:28 AM, Rainer M Krug
r.m.k...@gmail.com wrote: On 06/01/12 08:45, Eric Schulte wrote:
Frozenlock frozenl...@gmail.com writes:
I am a strong advocate in keeping the source of
everything.
However, Â a source can easily be lost if it doesn't follow
the document. In LaTeX, there's a package to attach a file
to a PDF (like when you attach a file to an email). By
doing so, the source will follow the PDF even if the common
reader have no clue what it's for, or even how to use it.
This sounds like a great Reproducible Research practice.
Here is how I attach my org source to every document I
export to PDF:
;; Include the source file for every exported PDF
(org-mode) (eval-after-load org-exp '(defadvice
org-export-as-latex (around org-export-add-source-pdf
activate) Add the source (org file) to the resulting pdf
file (let ((filename (buffer-name))) ad-do-it ;do the
function (let ((latex-buffer ad-return-value)) (set-buffer
latex-buffer) (while (re-search-forward
usepackage{.+} nil t)); go to the end of packages
(insert \n\\usepackage{attachfile2}); the package needed
to attach files (when (re-search-forward
end{document} nil t) (forward-line -1) (insert
(concat \\vfill\n \\footnotesize\n The source of this
document is an Org-Mode file attached here:
\n\\attachfile { filename }))) (save-buffer)
This is by no mean a patch, but rather a quick hack.
Perhaps someone with a working knowledge of the org-export
could find a way to add a source option?
I think this practice may not actually require any changes to
the Org-mode core. Â The attached small Org-mode file will
attach itself to pdf exports using only features already
present in Org-mode.
Following this idea - how can I easily attach all files created by
tangling? Is there a programmatic way, without having to specify
them manually?
Thanks,
Rainer
Thanks for sharing this idea!
Cheers!
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49
[O] BUG: C-c C-c no longer renumbers ordered lists
Hi list, It seems that C-c C-c no longer renumbers ordered lists (today's git pull). I'm not sure when this behaviour disappeared, but it is still referenced in the manual[1], so I assume it is a bug. I apologize that I don't have time to narrow down which commit introduced the change. -Anthony [1] http://www.gnu.org/software/emacs/manual/html_node/org/Plain-lists.html
Re: [O] Rsquared for reproductible research
Wow! http://rsquared.stat.uni-muenchen.de/index.rhtml looks great--very interesting--thanks for the heads-up on that link. Worked with R/S/S-PLUS in grad school--easily my favorite language/system--especially like its ease of extensibility--reminds me of EMACS LISP! I recognized your name, Stephen, as the long-time maintainer of the Emacs Lisp List--thanks for that too. Are you envisioning a repository beyond Emacs Lisp List for OrgMode implementations and/or Babel examples. Or maybe optional extensions to OrgMode itself? Both? Also, I very much agree that a near exact replica of the http://rsquared.stat.uni-muenchen.de/index.rhtml for OrgMode would be great. Read the 3 papers on the site and came across this reference that may be interesting to OrgMode/R/Literate Programming persons: http://cran.r-project.org/web/packages/roxygen/index.html Maybe that could be a focus of such a site if it were made?: OrgMode = LiterateProgramming = R/Bable/whatever other languages. --where such topics intersect. On Thu, Jan 12, 2012 at 7:38 AM, Stephen Eglen sj...@cam.ac.uk wrote: Following on from an old thread about self-configuring org files for reproducible research, R users might be interested to see the following web site which is exactly what I was thinking of for org mode (but of course, works only for R packages.) http://rsquared.stat.uni-muenchen.de/index.rhtml Stephen
[O] how to get \circ symbol in odt export?
Hi,
I usually export to PDF via LaTeX. One of the symbols I use a lot is
the degree symbol (as in degrees C) and typically do this with a
latex-ism:
^{\circ}C
This doesn't export well to ODT. Can anybody suggest what I can use
that would? Using ^{o}C works but doesn't look very nice (lower case
o is not a circle, more of an oval).
Not a critical issue but I *am* curious!
Thanks,
eric
--
: Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.92.1
: using Org-mode version 7.8.03 (release_7.8.03.106.gc835)
Re: [O] how to get \circ symbol in odt export?
Eric S Fraga e.fr...@ucl.ac.uk writes:
Hi,
I usually export to PDF via LaTeX. One of the symbols I use a lot is
the degree symbol (as in degrees C) and typically do this with a
latex-ism:
^{\circ}C
This doesn't export well to ODT. Can anybody suggest what I can use
that would? Using ^{o}C works but doesn't look very nice (lower case
o is not a circle, more of an oval).
Not a critical issue but I *am* curious!
Thanks,
eric
I've answered my own question: simply resort to UTF characters!
Replacing ^{\circ} with the DEGREE SIGN unicode character (°) does the
trick for both latex/pdf and odt exports! *And* looks good in the org
buffer as well.
--
: Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.92.1
: using Org-mode version 7.8.03 (release_7.8.03.106.gc835)
Re: [O] Rsquared for reproductible research
I recognized your name, Stephen, as the long-time maintainer of the Emacs Lisp List--thanks for that too. Are you envisioning a repository beyond Emacs Lisp List for OrgMode implementations and/or Babel examples. I am interested in maintaining a collection of nice org-babel-R examples, given my interest in R and Emacs; I made a small start last year for my tutorial notes on ESS for the useR meeting, but I'd like to update that. The key problem I found with learning org-babel was worked examples, given that the syntax was changing rapidly. I hope that has now stabilised, and I should followup with Eric about this. (I also hope to kill off the Emacs Lisp List once the ELPA has taken off.) Also, I very much agree that a near exact replica of the http:// rsquared.stat.uni-muenchen.de/index.rhtml for OrgMode would be great. Yes! Any takers?!? http://cran.r-project.org/web/packages/roxygen/index.html Note that ESS has limited support for editing roxygen tags. Stephen
Re: [O] BUG: C-c C-c no longer renumbers ordered lists
Hi Anthony, Anthony Lander anth...@landerfamily.ca writes: It seems that C-c C-c no longer renumbers ordered lists (today's git pull). I'm not sure when this behaviour disappeared, but it is still referenced in the manual[1], so I assume it is a bug. I apologize that I don't have time to narrow down which commit introduced the change. I confirm this bug. As a workaround, moving one item up or down fixes the numbers. Thanks for reporting this, -- Bastien
Re: [O] inline src_R also in latex src block
Sebastien Vauban wxhgmqzgwmuf-genee64ty+gs+fvcfc7...@public.gmane.org writes: That's perfectly correct: as long as your input code block does not change (options on the meta line and/or contents), your results will be taken as is, instead of being recomputed every time. Very nice, Thanks for confirmation! Michael
Re: [O] how to get \circ symbol in odt export?
Eric S Fraga e.fr...@ucl.ac.uk writes:
Eric S Fraga e.fr...@ucl.ac.uk writes:
Hi,
I usually export to PDF via LaTeX. One of the symbols I use a lot is
the degree symbol (as in degrees C) and typically do this with a
latex-ism:
^{\circ}C
This doesn't export well to ODT. Can anybody suggest what I can use
that would? Using ^{o}C works but doesn't look very nice (lower case
o is not a circle, more of an oval).
Not a critical issue but I *am* curious!
Thanks,
eric
I've answered my own question: simply resort to UTF characters!
Replacing ^{\circ} with the DEGREE SIGN unicode character (°) does the
trick for both latex/pdf and odt exports! *And* looks good in the org
buffer as well.
For the sake of completeness, I'll mention that Scott Pakin's
Comprehensive LaTeX Symbol List[1] lists several packages which include
\degree or something similar.
[1] http://www.ctan.org/tex-archive/info/symbols/comprehensive/
Re: [O] how to get \circ symbol in odt export?
Carson Chittom car...@wistly.net writes:
Eric S Fraga e.fr...@ucl.ac.uk writes:
Eric S Fraga e.fr...@ucl.ac.uk writes:
Hi,
I usually export to PDF via LaTeX. One of the symbols I use a lot is
the degree symbol (as in degrees C) and typically do this with a
latex-ism:
^{\circ}C
This doesn't export well to ODT. Can anybody suggest what I can use
that would? Using ^{o}C works but doesn't look very nice (lower case
o is not a circle, more of an oval).
Not a critical issue but I *am* curious!
Thanks,
eric
I've answered my own question: simply resort to UTF characters!
Replacing ^{\circ} with the DEGREE SIGN unicode character (°) does the
trick for both latex/pdf and odt exports! *And* looks good in the org
buffer as well.
For the sake of completeness, I'll mention that Scott Pakin's
Comprehensive LaTeX Symbol List[1] lists several packages which include
\degree or something similar.
[1] http://www.ctan.org/tex-archive/info/symbols/comprehensive/
Thanks Carsten; this is a useful link indeed for latex users!
I'm not sure if any of these symbols, in general, export well to ODT?
At least the UTF solution seems to work in my specific case!
--
: Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.92.1
: using Org-mode version 7.8.03 (release_7.8.03.106.gc835)
Re: [O] Rsquared for reproductible research
Stephen Eglen s.j.eg...@damtp.cam.ac.uk writes: I recognized your name, Stephen, as the long-time maintainer of the Emacs Lisp List--thanks for that too. Are you envisioning a repository beyond Emacs Lisp List for OrgMode implementations and/or Babel examples. I am interested in maintaining a collection of nice org-babel-R examples, given my interest in R and Emacs; I made a small start last year for my tutorial notes on ESS for the useR meeting, but I'd like to update that. The key problem I found with learning org-babel was worked examples, given that the syntax was changing rapidly. I hope that has now stabilised, and I should followup with Eric about this. The syntax is now stabilized (we wanted to get this sorted before the final Emacs24 merge). That which is currently described in the manual is and should remain the proper Org-mode code block syntax. For many small examples, please see [1] which I (unfortunately) haven't been adding to recently, but I will try to once again start using for all of my small generally-mailing-list-inspired Babel one-offs. (I also hope to kill off the Emacs Lisp List once the ELPA has taken off.) Also, I very much agree that a near exact replica of the http:// rsquared.stat.uni-muenchen.de/index.rhtml for OrgMode would be great. Yes! Any takers?!? From looking at the fairly terse web site for R^2 it is not clear to me exactly what the system includes (I'm sure I'm missing something obvious). It seems to be the addition of a packaging system over-top of R source files. What would a potential Org-mode based system provide which is not already possible with Org-mode text files, Org-mode publishing and a version control repository. Perhaps the benefit would simply be a system which eases the integration of Org, publishing, version control, and possibly automatic Makefile creation with tasks like publish, clean etc... Best, http://cran.r-project.org/web/packages/roxygen/index.html Note that ESS has limited support for editing roxygen tags. Stephen Footnotes: [1] http://eschulte.me/org-scraps/ -- Eric Schulte http://cs.unm.edu/~eschulte/
Re: [O] BUG: C-c C-c no longer renumbers ordered lists
Hello, Anthony Lander anth...@landerfamily.ca writes: It seems that C-c C-c no longer renumbers ordered lists. True. This should now be fixed. Thanks for reporting it. Regards, -- Nicolas Goaziou
Re: [O] how to get \circ symbol in odt export?
On 1/12/12 5:22 PM, Eric S Fraga wrote:
I'm not sure if any of these symbols, in general, export well to ODT?
At least the UTF solution seems to work in my specific case!
Hi,
I prefer utf-8 myself, but should it be impractical for any reason,
Org's built-in \deg entity is another possibility.
Terminate with {} before non-space character, e.g.:
Global mean temperature rose 0.74 \deg{}C over 1906--2005.
See the manual, 11.7.1 for pretty inline display.
Yours,
Christian
Re: [O] Rsquared for reproductible research
Eric Schulte eric.schu...@gmx.com writes: Stephen Eglen s.j.eg...@damtp.cam.ac.uk writes: I recognized your name, Stephen, as the long-time maintainer of the Emacs Lisp List--thanks for that too. Are you envisioning a repository beyond Emacs Lisp List for OrgMode implementations and/or Babel examples. I am interested in maintaining a collection of nice org-babel-R examples, given my interest in R and Emacs; I made a small start last year for my tutorial notes on ESS for the useR meeting, but I'd like to update that. The key problem I found with learning org-babel was worked examples, given that the syntax was changing rapidly. I hope that has now stabilised, and I should followup with Eric about this. The syntax is now stabilized (we wanted to get this sorted before the final Emacs24 merge). That which is currently described in the manual is and should remain the proper Org-mode code block syntax. For many small examples, please see [1] which I (unfortunately) haven't been adding to recently, but I will try to once again start using for all of my small generally-mailing-list-inspired Babel one-offs. (I also hope to kill off the Emacs Lisp List once the ELPA has taken off.) Also, I very much agree that a near exact replica of the http:// rsquared.stat.uni-muenchen.de/index.rhtml for OrgMode would be great. Yes! Any takers?!? From looking at the fairly terse web site for R^2 it is not clear to me exactly what the system includes (I'm sure I'm missing something obvious). It seems to be the addition of a packaging system over-top of R source files. What would a potential Org-mode based system provide which is not already possible with Org-mode text files, Org-mode publishing and a version control repository. One thing that caught my eye was the facility that compared results across operating systems. Tom Perhaps the benefit would simply be a system which eases the integration of Org, publishing, version control, and possibly automatic Makefile creation with tasks like publish, clean etc... Best, http://cran.r-project.org/web/packages/roxygen/index.html Note that ESS has limited support for editing roxygen tags. Stephen Footnotes: [1] http://eschulte.me/org-scraps/ -- Thomas S. Dye http://www.tsdye.com
[O] [babel] org mode tables and tangling
Hi all, What is the suggested way to use org mode tables in connection with tangling? Example: If I tangle this org mode file /org-file=\ | * org-tables and reproducibility | | #+name: params | | | number | param | | | |+---| | | | 0 | 1 | | | | 1 | 1 | | | | | #+begin_src R :var params=params :tangle test.R | | apply(params, 1, print) | | #+end_src | \/org-file/ the tangled file looks like /test.R===\ | params - read.table(/tmp/babel-19196cip/R-import-19196ILE, | |header=TRUE, row.names=NULL, sep=\t, as.is=TRUE) | | attach(params)| | apply(params, 1, print) | \/test.R==/ which depends on a temporary file. I could distribute that along with the tangled file, of course. But I'd like a distributable, ideally self-contained version, that my co-workers can work with. Something like this, maybe: /sample.R===\ | # generated with R dput()...| | babel_tmp_1238h098 - structure(list(means = 0:1, sds = c(1L, 1L)), | | .Names = c(means, sds), | | class = data.frame, | | row.names = c(NA, -2L)) | | params - dget(textConnection(babel_tmp_1238h098, r)) | \/sample.R==/ Is such a mode of tangling already available for R? Best, Andreas
[O] Way to replace normal tabular env with booktabs?
Greetings, I was using wikibooks for some formatting assistance on tables the other day and ran into mention of the booktabs package in the Professional tables section. [1] [2] I really, really liked it's formatting, especially since one of my column headers was a fraction. The standard tabular package places the \hlines extremely close to the top and bottom of my header row vs., as the booktabs package says, having extremely nice looking spacing for the table. I ended up doing the table manually inside #+begin_latex block. Would there be any way to specify that booktabs should be used? The formatting is literally identical except for 1) including the booktabs package and 2) using \toprule, \midrule and \bottomrule instead of \hlines. In fact, even with booktabs included, if you use \hlines instead of the booktab specific lines, you'll get a regular tabular table. Any thoughts on this? Best regards, John - [1] http://en.wikibooks.org/wiki/LaTeX/Tables#Professional_tables [2] http://www.ctan.org/tex-archive/macros/latex/contrib/booktabs/
Re: [O] how to get \circ symbol in odt export?
Christian Moe m...@christianmoe.com writes:
I prefer utf-8 myself, but should it be impractical for any reason,
Org's built-in \deg entity is another possibility.
Terminate with {} before non-space character, e.g.:
Global mean temperature rose 0.74 \deg{}C over 1906--2005.
See the manual, 11.7.1 for pretty inline display.
Oh, hey, neat! (I'm definitely going to have to back over the manual.)
Re: [O] Rsquared for reproductible research
Also, I very much agree that a near exact replica of the http:// rsquared.stat.uni-muenchen.de/index.rhtml for OrgMode would be great. Yes! Any takers?!? ... Eric questioned: From looking at the fairly terse web site for R^2 it is not clear to me exactly what the system includes (I'm sure I'm missing something obvious). It seems to be the addition of a packaging system over-top of R source files. What would a potential Org-mode based system provide which is not already possible with Org-mode text files, Org-mode publishing and a version control repository. ... * I mostly agree with your statements. Good challenges. I did more investigation: This link to the paper that Friedrich Leischa, , Manuel Eugsterb, Torsten Hothornb put together may make things clearer--this paper really seems to be the justification/impetus for the R^2 website--it has made things clearer and more exciting for me: http://www.sciencedirect.com/science/article/pii/S1877050911001232 = Executable Papers for the R Community: The R2 Platform for Reproducible Research ** So papers in R (and maybe other languages--maybe languages run thru Babel in OrgMode) could be executed by people in the community--one could verify research studies and papers interactively, ad hoc. *** They mention in the paper that they use several key tools: R: the lingua franca of statistics and data analysis Sweave: the most popular format for executable papers in the R community CRAN: package building and checking system has been developed for more then a decade and copes successfully with the exponential growth of the number of packages Weave/CWEB/CWEAVE/CTANGLE=NOWEB (Knuth) comes to mind here--i.e. Literate Programming * http://www-cs-staff.stanford.edu/~uno/cweb.html = CTANGLE converts a source file foo.w to a compilable program file foo.c; CWEAVE converts a source file foo.w to a prettily-printable and cross-indexed document file foo.tex. * Exactly the paper can be found at: http://www.sciencedirect.com/science\ ?_ob=MiamiImageURL_cid=280203_user=10_pii=S1877050911001232\ _check=y_origin=article_zone=toolbar_coverDate=\ 31-Dec-2011view=coriginContentFamily=serialwchp=\ dGLbVlS-zSkWbmd5=4681e5babd7822f321d2a0dd3a9f11cf/\ 1-s2.0-S1877050911001232-main.pdf * I agree Eric that the website is a bit terse; but, for the most part I was excited about (and I think Stephen is interested in--he suggested it is something the community might do) the general ideas, the structure of the website's process OrgMode=TeX paper in--...process...--Executable/verifiable code interaction a user might experience/stored on-line for researchers (one thing I always enjoy a lot when working with e.g. R/S-PLUS and PYTHON's interactive CLI, etc.) ** They even publish the minute details of the settings on the machines--the local environment variables, etc.--the devil is in the details! * Thanks for the link Eric to your OrgMode scraps--they could be very useful: http://eschulte.me/org-scraps/ * Lastly, most importantly I'll repeat the link and query to the community: ... Also, I very much agree that a near exact replica of the http://rsquared.stat.uni-muenchen.de/index.rhtml for OrgMode would be great. Yes! Any takers?!?---(Stephen Eglen)
Re: [O] how to get \circ symbol in odt export?
Christian Moe m...@christianmoe.com writes: On 1/12/12 5:22 PM, Eric S Fraga wrote: I'm not sure if any of these symbols, in general, export well to ODT? At least the UTF solution seems to work in my specific case! Hi, I prefer utf-8 myself, but should it be impractical for any reason, Org's built-in \deg entity is another possibility. Thanks. \deg works well. Is there a list for symbols that will translate properly in ODT export, akin to the org-entities variable? That variable knows about latex, ascii, html, ... but not ODT! -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.92.1 : using Org-mode version 7.8.03 (release_7.8.03.117.ga7389)
[O] leave inactive timestamp inactive
Hi all When one does Shift-right on an inactive timestamp it remains inactive. When one does C-c . S-right RET the inactive timestamp changes to active but I would like it also to remain inactive. What are the opinions on this? My frequent use case is changing an inactive timestamp left over from a copy/paste to today with C-c . . RET. The behavior could be changed very easily by just uncommenting this line: http://orgmode.org/w/?p=org-mode.git;a=blob;f=lisp/org.el;h=e878626d6e6ae68781546a270ae1020c477581fd;hb=HEAD#l14792 ; (setq inactive (eq (char-after (match-beginning 0)) ?\[)) which has been inserted with release_6.07b-42-gd043e31: commit d043e31182595983df3d191e80ca941ee171c400 Author: Carsten Dominik carsten.domi...@gmail.com Date: Wed Oct 1 09:25:18 2008 +0200 Integrate John Wiegley's org-attach.el. Michael
Re: [O] Way to replace normal tabular env with booktabs?
Hi John, Agreed, booktabs makes good looking tables. Check out your Library of Babel. There should be a couple of functions there that will help you go from Org mode to booktabs. hth, Tom John Hendy jw.he...@gmail.com writes: Greetings, I was using wikibooks for some formatting assistance on tables the other day and ran into mention of the booktabs package in the Professional tables section. [1] [2] I really, really liked it's formatting, especially since one of my column headers was a fraction. The standard tabular package places the \hlines extremely close to the top and bottom of my header row vs., as the booktabs package says, having extremely nice looking spacing for the table. I ended up doing the table manually inside #+begin_latex block. Would there be any way to specify that booktabs should be used? The formatting is literally identical except for 1) including the booktabs package and 2) using \toprule, \midrule and \bottomrule instead of \hlines. In fact, even with booktabs included, if you use \hlines instead of the booktab specific lines, you'll get a regular tabular table. Any thoughts on this? Best regards, John - [1] http://en.wikibooks.org/wiki/LaTeX/Tables#Professional_tables [2] http://www.ctan.org/tex-archive/macros/latex/contrib/booktabs/ Greetings,I was using wikibooks for some formatting assistance on tables the other day and ran into mention of the booktabs package in the Professional tables section. [1] [2] I really, really liked it#39;s formatting, especially since one of my column headers was a fraction. The standard tabular package places the \hlines extremely close to the top and bottom of my header row vs., as the booktabs package says, having extremely nice looking spacing for the table. I ended up doing the table manually inside #+begin_latex block. Would there be any way to specify that booktabs should be used? The formatting is literally identical except for 1) including the booktabs package and 2) using \toprule, \midrule and \bottomrule instead of \hlines. In fact, even with booktabs included, if you use \hlines instead of the booktab specific lines, you#39;ll get a regular tabular table. Any thoughts on this?Best regards,John-[1] http://en.wikibooks.org/wiki/LaTeX/Tables#Professional_tables [2] http://www.ctan.org/tex-archive/macros/latex/contrib/booktabs/ -- Thomas S. Dye http://www.tsdye.com
Re: [O] how to get \circ symbol in odt export?
On 1/12/12 8:49 PM, Eric S Fraga wrote: Is there a list for symbols that will translate properly in ODT export, akin to the org-entities variable? That variable knows about latex, ascii, html, ... but not ODT! Not to worry, org-entities and ODT both speak utf-8. Yours, Christian
Re: [O] Rsquared for reproductible research
brian powell briangpowel...@gmail.com writes: Also, I very much agree that a near exact replica of the http:// rsquared.stat.uni-muenchen.de/index.rhtml for OrgMode would be great. Yes! Any takers?!? ... Eric questioned: From looking at the fairly terse web site for R^2 it is not clear to me exactly what the system includes (I'm sure I'm missing something obvious). It seems to be the addition of a packaging system over-top of R source files. What would a potential Org-mode based system provide which is not already possible with Org-mode text files, Org-mode publishing and a version control repository. ... * I mostly agree with your statements. Good challenges. I did more investigation: This link to the paper that Friedrich Leischa, , Manuel Eugsterb, Torsten Hothornb put together may make things clearer--this paper really seems to be the justification/impetus for the R^2 website--it has made things clearer and more exciting for me: http://www.sciencedirect.com/science/article/pii/S1877050911001232 Ah, thank you for linking to this paper. It seems I was missing was the package-management aspect provided by R2 through CRAN. The instillation of all software dependencies is a huge benefit exactly as installing software with apt-get or pacman is simpler than running ./configure make and manually resolving dependencies. While such a tool makes sense for a single language system like R, I fear an Org-mode version of such a system would have too wide of a scope. Given that code blocks may contain arbitrary languages, and that sh blocks can freely call any command-line executable such a system would turn into a system-wide package management tool. Perhaps there already exists a portable package management system designed for local installs which could handle most of the heavy lifting. As another option, distributing Virtual Machine images are one solution which I think work well and are increasingly realistic. Or similarly providing the research environment as a cloud server image (e.g., Amazon EC2). Certainly an interesting area for further work! Best, -- Eric Schulte http://cs.unm.edu/~eschulte/
Re: [O] Rsquared for reproductible research
The syntax is now stabilized (we wanted to get this sorted before the final Emacs24 merge). That which is currently described in the manual is and should remain the proper Org-mode code block syntax. Thanks Eric, this is great news. I'll ensure my examples from last year still work with the current org-mode syntax. For many small examples, please see [1] which I (unfortunately) haven't That's a nice site, thanks! From looking at the fairly terse web site for R^2 it is not clear to me exactly what the system includes (I'm sure I'm missing something obvious). It seems to be the addition of a packaging system over-top of R source files. What would a potential Org-mode based system provide which is not already possible with Org-mode text files, Org-mode publishing and a version control repository. The accompanying paper from 2011 goes into detail as to what it does. But in essence, the website is supposed to be 'neutral', in that it is not your local system. A document may compile on my system, but not for others, because it depends on my local configuration. Having a neutral system will avoid such problems. A neutral system could also have support for all babel languages, so that I can use it to compile someone's document without e.g. having a common-lisp compiler on my system. Perhaps the benefit would simply be a system which eases the integration of Org, publishing, version control, and possibly automatic Makefile creation with tasks like publish, clean etc... yes, that too! best wishes, Stephen
[O] Quoting characters?
Hello! When working with Org-mode I sometimes run into oddities, when a character I need clashes with org-mode syntax. Is there a way to avoid this? Examples would be: Writing a macro that expands to `$\neg$': #+macro: not $\neg$ expands to $ eg$ even if I write it as \\neg. Writing the macro in the C-c C-' buffer produces \n, but when editing it again, it is displayed as a newline. Similiarily, I found no way to have \^ or \_ appear in the export, when I wanted to write about escaping ^ and _ as =\^= and =\_= respectively. Here as well, writing multiple backslashes wouldn't change the output. Maybe related, I found that when editing an block : #+foo: bar : This is an org-mode example with C-c C-', the result text will be : ,#+foo: bar : This is an org-mode example The extra comma generated will still be there also in the C-c C-' editing buffer. In a source code block, that is declared to be of the language org, this behaviour doesn't appear, but it reappears for other languages. When exporting to html or pdf, the comma isn't present for src blocks, but it is for the colon blocks. kind regards, Yu
[O] Syntax error warnings? (Especially important with :noweb-ref's)
Hello! I was wondering, if there is a way to get warnings for typos (e.g. when specifying invalid properties or header arguments). It can just easily happen that I mix up e.g. :exports and :export (though that's probably a very harmless example). More important it gets though, when trying to use the literate programming facilities. Say I have a source code #+begin_src sh :noweb tangle :tangle foo.sh foo #+end_src #+begin_src sh :noweb-ref fo echo '... how are you?'; #+end_src then tangling would run through without any indication of the typo in the name of the foo block. Such errors might be hard to debug, because there is no indication of the error, maybe nothing other than runtime errors. An error message for the /use/ of undefined references only wouldn't avoid such problems either, e.g. consider #+begin_src sh :noweb tangle :tangle foo.sh foo #+end_src #+begin_src sh :noweb-ref foo echo 'Hello World...'; #+end_src #+begin_src sh :noweb-ref fo echo 'Hello World...'; #+end_src where the only detectable error is, that fo was never used anywhere. A similiar question (though without the second part) was asked here: http://lists.gnu.org/archive/html/emacs-orgmode/2009-11/msg00273.html As far as I can tell, it stands unanswered. On a side note: What is the customary way to mention the noweb-relevant name of a source block in the html/pdf export? After all, if a code-block states : task1 : task2 the reader needs to know, which code blocks define these. kind regards, Yu
Re: [O] How to debug org-clock-display: Args out of range: [48230 48230 48230 38618 38618 0 0 0 0 0 ...], 61
Hi Bernt, org-mode developers, * Bernt Hansen be...@norang.ca [05. Jan. 2012]: Gregor Zattler telegr...@gmx.net writes: I use org-mode to record my working time. If I want to know the total time worked on a project I do a M-X org-clock-display. But this suddenly gives me this error message: org-clock-display: Args out of range: [48230 48230 48230 38618 38618 0 0 0 0 0 ...], 61 I checked the org file but do not find any irregularities in the clock tables. I even deleted all individual `= HH:MM' time ranges but this did not help. With something like bisecting I narrowed the problem down to a few headlines consisting of subheadings, bullet lists, checkboxed lists a few inline tasks etc. All in all 253 lines of text. It looks totally harmless to me. This happens with emacs23.3, org-mode 6.33 as with Emacs-snapshot and newest org-mode so I assume it is something like a syntax error in my org file. In both cases I startet Emacs with -Q so this is not a configuration issue -- besides a few #+STARTUP lines at the beginning orf the org file. Any idea where to look for the cause of the error? If you generate a backtrace with uncompiled org source files you should get an indication of where the problem is. I did as you said but the backtrace is totally opaque to me: Debugger entered--Lisp error: (args-out-of-range [49569 49569 49569 39957 39957 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0] 61) aref([49569 49569 49569 39957 39957 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0] 61) ( (aref ltimes level) 0) (or ( t1 0) ( (aref ltimes level) 0)) (if (or ( t1 0) ( (aref ltimes level) 0)) (progn (when (or headline-included headline-forced) (if headline-included (loop for l from 0 to level do (aset ltimes l (+ (aref ltimes l) t1 (setq time (aref ltimes level)) (goto-char (match-beginning 0)) (put-text-property (point) (point-at-eol) :org-clock-minutes time) (if headline-filter (save-excursion (save-match-data (while ( ... 1) (outline-up-heading 1 t) (put-text-property ... ... :org-clock-force-headline-inclusion t)) (setq t1 0) (loop for l from level to (1- lmax) do (aset ltimes l 0 (when (or ( t1 0) ( (aref ltimes level) 0)) (when (or headline-included headline-forced) (if headline-included (loop for l from 0 to level do (aset ltimes l (+ (aref ltimes l) t1 (setq time (aref ltimes level)) (goto-char (match-beginning 0)) (put-text-property (point) (point-at-eol) :org-clock-minutes time) (if headline-filter (save-excursion (save-match-data (while ( (funcall outline-level) 1) (outline-up-heading 1 t) (put-text-property (point) (point-at-eol) :org-clock-force-headline-inclusion t)) (setq t1 0) (loop for l from level to (1- lmax) do (aset ltimes l 0))) (let* ((headline-forced (get-text-property (point) :org-clock-force-headline-inclusion)) (headline-included (or (null headline-filter) (save-excursion (save-match-data (funcall headline-filter)) (setq level (- (match-end 1) (match-beginning 1))) (when (or ( t1 0) ( (aref ltimes level) 0)) (when (or headline-included headline-forced) (if headline-included (loop for l from 0 to level do (aset ltimes l (+ (aref ltimes l) t1 (setq time (aref ltimes level)) (goto-char (match-beginning 0)) (put-text-property (point) (point-at-eol) :org-clock-minutes time) (if headline-filter (save-excursion (save-match-data (while ( ... 1) (outline-up-heading 1 t) (put-text-property ... ... :org-clock-force-headline-inclusion t)) (setq t1 0) (loop for l from level to (1- lmax) do (aset ltimes l 0 (cond ((match-end 2) (setq ts (match-string 2) te (match-string 3) ts (org-float-time (apply (quote encode-time) (org-parse-time-string ts))) te (org-float-time (apply (quote encode-time) (org-parse-time-string te))) ts (if tstart (max ts tstart) ts) te (if tend (min te tend) te) dt (- te ts) t1 (if ( dt 0) (+ t1 (floor (/ dt 60))) t1))) ((match-end 4) (setq t1 (+ t1 (string-to-number (match-string 5)) (* 60 (string-to-number (match-string 4)) (t (when (and org-clock-report-include-clocking-task (equal (org-clocking-buffer) (current-buffer)) (equal (marker-position org-clock-hd-marker) (point)) tstart tend (= (org-float-time org-clock-start-time) tstart) (= (org-float-time org-clock-start-time) tend)) (let ((time (floor (- ... ...) 60))) (setq t1 (+ t1 time (let* ((headline-forced (get-text-property (point) :org-clock-force-headline-inclusion)) (headline-included (or (null headline-filter) (save-excursion (save-match-data ...) (setq level (- (match-end 1) (match-beginning 1))) (when (or ( t1 0) ( (aref ltimes level) 0)) (when (or headline-included headline-forced) (if headline-included (loop for l from 0 to level do (aset ltimes l ...))) (setq time (aref ltimes level)) (goto-char (match-beginning 0)) (put-text-property (point) (point-at-eol) :org-clock-minutes time) (if headline-filter (save-excursion (save-match-data ... (setq t1 0) (loop for l from level to
[O] [Bug] Auto-fill and *bold-face* at line-begin
Hi, Filling paragraphs where the first word is *bold-face* fills the following lines beginning in the 2nd column. See attached file for details. Regards, Max * A *this is a test* where the line begins with a bold-face-star. When the line is auto-filled, it starts in the 2nd column. Here's another paragraph starting without bold-face and filling it starts lines in 1st column.
Re: [O] org-babel order of evaluation
Therefore, when executing an entire buffer, there is no way to have the execution of a call block dependent on the prior execution of a source block. It would be better to make the dependency explicit by passing the results of the call line as a (potentially unused) variable to the code block. For example; [snip] There is (at least currently) no guarantee that evaluation order will be buffer order. I've been extremely confused by this in the past; this should be prominently documented. In the long run, I would like to see this behavior changed. One would intuitively expect all the source code in the file to be evaluated in order. This is how it works in pretty much any other interpreter, why should org-babel be different? (I'm a big fan of the principle of least surprise, and this behavior violates it with vengeance :) ) This is particularly nasty because many users start by treating an org-babel file as a fancier version of the original source code with nice annotations and outline levels; typically in a single language. Thus, operationally, there isn't a distinction between tangling the blocks into a single source file and feeding that to the interpreter and running execute on the whole buffer. But then, of course, one might start using named blocks, variables, and #+call directives. It achieves the same effect as writing wrapper functions (or issuing statements like source(somefile)) in the original language. So, when it results in a completely different execution order, it's a huge surprise. Even if this can be fixed by putting dummy dependencies in by hand, this fix seems inelegant and hacky. Is there some deep rationale for the current behavior that I'm not seeing? Are there big obstacles to enforcing ligeral execution order? --Leo
Re: [O] How to debug org-clock-display: Args out of range: [48230 48230 48230 38618 38618 0 0 0 0 0 ...], 61
Gregor Zattler telegr...@gmx.net wrote: Debugger entered--Lisp error: (args-out-of-range [49569 49569 49569 39957 3= 9957 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0] 61) aref([49569 49569 49569 39957 39957 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0= 0 0 0 0 0 0] 61) This tries to get the 61st element of a vector that has at most 30 or so elements, hence the complaint. But of course, that's hardly enlightening. However, the backtrace shows that this code is inside the function org-clock-sum (in org-clock.el). And if you look at that function, you see (where I have elided large swathes of code): (let* (... (lmax 30) (ltimes (make-vector lmax 0)) ... So ltimes is a vector with *exactly* 30 elements. I would change that 30 to 100 or so (something greater than 61 in any case) and retest. If that fixes it, then we know the culprit and then we can dedice which is the unreasonable one: the code or your subtree :-) Nick ( (aref ltimes level) 0) (or ( t1 0) ( (aref ltimes level) 0)) (if (or ( t1 0) ( (aref ltimes level) 0)) (progn (when (or headline-inc= luded headline-forced) (if headline-included (loop for l from 0 to level do= (aset ltimes l (+ (aref ltimes l) t1 (setq time (aref ltimes level)) (= goto-char (match-beginning 0)) (put-text-property (point) (point-at-eol) :o= rg-clock-minutes time) (if headline-filter (save-excursion (save-match-data= (while ( ... 1) (outline-up-heading 1 t) (put-text-property ... ... :org-= clock-force-headline-inclusion t)) (setq t1 0) (loop for l from level t= o (1- lmax) do (aset ltimes l 0 (when (or ( t1 0) ( (aref ltimes level) 0)) (when (or headline-included= headline-forced) (if headline-included (loop for l from 0 to level do (ase= t ltimes l (+ (aref ltimes l) t1 (setq time (aref ltimes level)) (goto-= char (match-beginning 0)) (put-text-property (point) (point-at-eol) :org-cl= ock-minutes time) (if headline-filter (save-excursion (save-match-data (whi= le ( (funcall outline-level) 1) (outline-up-heading 1 t) (put-text-propert= y (point) (point-at-eol) :org-clock-force-headline-inclusion t)) (setq = t1 0) (loop for l from level to (1- lmax) do (aset ltimes l 0))) (let* ((headline-forced (get-text-property (point) :org-clock-force-headl= ine-inclusion)) (headline-included (or (null headline-filter) (save-excursi= on (save-match-data (funcall headline-filter)) (setq level (- (match-en= d 1) (match-beginning 1))) (when (or ( t1 0) ( (aref ltimes level) 0)) (w= hen (or headline-included headline-forced) (if headline-included (loop for = l from 0 to level do (aset ltimes l (+ (aref ltimes l) t1 (setq time (a= ref ltimes level)) (goto-char (match-beginning 0)) (put-text-property (poin= t) (point-at-eol) :org-clock-minutes time) (if headline-filter (save-excurs= ion (save-match-data (while ( ... 1) (outline-up-heading 1 t) (put-text-pr= operty ... ... :org-clock-force-headline-inclusion t)) (setq t1 0) (loo= p for l from level to (1- lmax) do (aset ltimes l 0 (cond ((match-end 2) (setq ts (match-string 2) te (match-string 3) ts (or= g-float-time (apply (quote encode-time) (org-parse-time-string ts))) te (or= g-float-time (apply (quote encode-time) (org-parse-time-string te))) ts (if= tstart (max ts tstart) ts) te (if tend (min te tend) te) dt (- te ts) t1 (= if ( dt 0) (+ t1 (floor (/ dt 60))) t1))) ((match-end 4) (setq t1 (+ t1 (s= tring-to-number (match-string 5)) (* 60 (string-to-number (match-string 4))= (t (when (and org-clock-report-include-clocking-task (equal (org-clock= ing-buffer) (current-buffer)) (equal (marker-position org-clock-hd-marker) = (point)) tstart tend (=3D (org-float-time org-clock-start-time) tstart) (= =3D (org-float-time org-clock-start-time) tend)) (let ((time (floor (- ... = =2E..) 60))) (setq t1 (+ t1 time (let* ((headline-forced (get-text-prop= erty (point) :org-clock-force-headline-inclusion)) (headline-included (or (= null headline-filter) (save-excursion (save-match-data ...) (setq level= (- (match-end 1) (match-beginning 1))) (when (or ( t1 0) ( (aref ltimes = level) 0)) (when (or headline-included headline-forced) (if headline-includ= ed (loop for l from 0 to level do (aset ltimes l ...))) (setq time (aref lt= imes level)) (goto-char (match-beginning 0)) (put-text-property (point) (po= int-at-eol) :org-clock-minutes time) (if headline-filter (save-excursion (s= ave-match-data ... (setq t1 0) (loop for l from level to (1- lmax) do (= aset ltimes l 0)) (while (re-search-backward re nil t) (cond ((match-end 2) (setq ts (match= -string 2) te (match-string 3) ts (org-float-time (apply (quote encode-time= ) (org-parse-time-string ts))) te (org-float-time (apply (quote encode-time= ) (org-parse-time-string te))) ts (if tstart (max ts tstart) ts) te (if ten= d (min te tend) te) dt (- te ts) t1 (if ( dt 0) (+ t1 (floor (/ dt 60))) t= 1))) ((match-end 4) (setq t1 (+ t1
[O] [OT] Emacs (elisp) as a scripting language
Just thought I'd share: http://www.leancrew.com/all-this/2008/04/emacs-lisp-as-a-scripting-language/ Simple and interesting. I can see the potential with orgmode! - Marcelo.
Re: [O] org-babel order of evaluation
On Thu, Jan 12, 2012 at 04:35:31PM -0600, Leo Alekseyev wrote: Therefore, when executing an entire buffer, there is no way to have the execution of a call block dependent on the prior execution of a source block. It would be better to make the dependency explicit by passing the results of the call line as a (potentially unused) variable to the code block. For example; [snip] The problem w/ this is that the (potentially time consuming) dependent will be executed twice when doing a buffer eval. There is (at least currently) no guarantee that evaluation order will be buffer order. Is there some deep rationale for the current behavior that I'm not seeing? Are there big obstacles to enforcing ligeral execution order? It's because prior to 7.8, call blocks were not executed during a buffer execute. The solution was to execute all the call blocks after executing the src block. (Eric would have to comment on how hard it would be to merge the two functions :). rick
Re: [O] how to get \circ symbol in odt export?
Christian Moe m...@christianmoe.com writes: On 1/12/12 8:49 PM, Eric S Fraga wrote: Is there a list for symbols that will translate properly in ODT export, akin to the org-entities variable? That variable knows about latex, ascii, html, ... but not ODT! Not to worry, org-entities and ODT both speak utf-8. Yours, Christian Excellent. Thanks. -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.92.1 : using Org-mode version 7.8.03 (release_7.8.03.117.ga7389)
Re: [O] How to debug org-clock-display: Args out of range: [48230 48230 48230 38618 38618 0 0 0 0 0 ...], 61
Nick Dokos nicholas.do...@hp.com wrote: Gregor Zattler telegr...@gmx.net wrote: Debugger entered--Lisp error: (args-out-of-range [49569 49569 49569 39957 3= 9957 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0] 61) aref([49569 49569 49569 39957 39957 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0= 0 0 0 0 0 0] 61) This tries to get the 61st element of a vector that has at most 30 or so elements, hence the complaint. But of course, that's hardly enlightening. However, the backtrace shows that this code is inside the function org-clock-sum (in org-clock.el). And if you look at that function, you see (where I have elided large swathes of code): (let* (... (lmax 30) (ltimes (make-vector lmax 0)) ... So ltimes is a vector with *exactly* 30 elements. I would change that 30 to 100 or so (something greater than 61 in any case) and retest. If that fixes it, then we know the culprit and then we can dedice which is the unreasonable one: the code or your subtree :-) Or maybe that 61 is way off base. After all, there are only 5 non-trivial entries in the vector. The code that sets the level seems suspect to me: (let* ((headline-forced (get-text-property (point) :org-clock-force-headline-inclusion)) (headline-included (or (null headline-filter) (save-excursion (save-match-data (funcall headline-filter)) (setq level (- (match-end 1) (match-beginning 1))) What do match-beginning/match-end return if headline-filter is nil? The save-match-data is not done, so we get the results of whatever random search was done last before this code executed. Nick
Re: [O] Minor org mode for achieve code folding effects
Carlos Russo mestre.adamastor at gmail.com writes: I have used both Carsten's and Eric's solution, as well as hideshow-org (https://github.com/secelis/hideshow-org), which works rather well and deserves a mention. Expanding a bit on Carsten's post: Tassilo Horn wrote some convenience functions to set the outline minor mode regexps to correspond to the current comment syntax. Thus, if I'm (for instance) in shell-script mode, # * and # ** become the outline level 1 and 2 markers. I have all this working and it's great. But...This is using outline-minor-mode. Like Giovanni, who started this thread, I'm used to orgmode, which is a little different although it uses outline mode. I tried hacking the code to use orgstruct-mode, which is the minor mode version of orgmode. I got a little figured out, but got lost. I would think all of Tassilo's code to automatically set up outline-regexp would still be valid, but I'm not doing something right. I saw Carsten's message to look at the visibility cycling and understand that, but the keymaps are not working right and the outline-regexp isn't being set right. I've worked around the latter with a quick function I can call from the file buffer. However, I don't know what's going on with the keymap. It looks right. For example, c-h k TAB gives this: tab runs the command orgstruct-hijacker-command-102, which is an interactive Lisp function. It is bound to tab. (orgstruct-hijacker-command-102 ARG) In Structure, run `org-cycle'. Outside of structure, run the binding of `[(tab)]' or `'. However, it doesn't seem to recognize when it's in a structure. M-x org-cycle works as does M-x org-global-cycle. I only need this for emacs-lisp-mode and verilog-mode so I simplified Tassilo's code like this: (when (eq major-mode 'emacs-lisp-mode) (setq outline-regexp ;; [*]+ )) (when (eq major-mode 'verilog-mode) (setq outline-regexp \\s-*// [*]+ )) Help Please! Thanks! David
Re: [O] Way to replace normal tabular env with booktabs?
On Thu, Jan 12, 2012 at 2:12 PM, Thomas S. Dye t...@tsdye.com wrote: Hi John, Agreed, booktabs makes good looking tables. Check out your Library of Babel. There should be a couple of functions there that will help you go from Org mode to booktabs. Haven't done much with babel other than writing code blocks. Do you mean this page? --- http://orgmode.org/worg/org-contrib/babel/library-of-babel.html Thanks for the suggestion. Feeling a bit lost, but am happy to look around for something that seems similar. I have no elisp-fu, so it'll need to be pretty darn similar :) John hth, Tom John Hendy jw.he...@gmail.com writes: Greetings, I was using wikibooks for some formatting assistance on tables the other day and ran into mention of the booktabs package in the Professional tables section. [1] [2] I really, really liked it's formatting, especially since one of my column headers was a fraction. The standard tabular package places the \hlines extremely close to the top and bottom of my header row vs., as the booktabs package says, having extremely nice looking spacing for the table. I ended up doing the table manually inside #+begin_latex block. Would there be any way to specify that booktabs should be used? The formatting is literally identical except for 1) including the booktabs package and 2) using \toprule, \midrule and \bottomrule instead of \hlines. In fact, even with booktabs included, if you use \hlines instead of the booktab specific lines, you'll get a regular tabular table. Any thoughts on this? Best regards, John - [1] http://en.wikibooks.org/wiki/LaTeX/Tables#Professional_tables [2] http://www.ctan.org/tex-archive/macros/latex/contrib/booktabs/ Greetings,I was using wikibooks for some formatting assistance on tables the other day and ran into mention of the booktabs package in the Professional tables section. [1] [2] I really, really liked it#39;s formatting, especially since one of my column headers was a fraction. The standard tabular package places the \hlines extremely close to the top and bottom of my header row vs., as the booktabs package says, having extremely nice looking spacing for the table. I ended up doing the table manually inside #+begin_latex block. Would there be any way to specify that booktabs should be used? The formatting is literally identical except for 1) including the booktabs package and 2) using \toprule, \midrule and \bottomrule instead of \hlines. In fact, even with booktabs included, if you use \hlines instead of the booktab specific lines, you#39;ll get a regular tabular table. Any thoughts on this?Best regards,John-[1] http://en.wikibooks.org/wiki/LaTeX/Tables#Professional_tables [2] http://www.ctan.org/tex-archive/macros/latex/contrib/booktabs/ -- Thomas S. Dye http://www.tsdye.com
[O] Invalid capture template with pull of Org 7.8.03?
Hi I was wondering if someone could point me in the right direction because one of my Org capture templates, that I use to feed questions to myself (for later use with org-drill) just broke with the most recent bzr pull of emacs. Now, when I try to use the capture template, I only get this header in my target org file. ** Invalid capture template I'm on the 24.0.92.1 version of emacs which ships with Org 7.8.03. Here's the template, which I stole from: http://orgmode.org/worg/org-contrib/org-drill.html (add-to-list 'org-capture-templates ' (W Capture web snippet entry (file+headline ~/git/org/learn-emacs.org Emacs mastery) ,(concat * Fact: '%:description': (format %s org-drill-question-tag) :\n:PROPERTIES:\n:DATE_ADDED: %u\n:SOURCE_URL: %c\n:END:\n\n%i\n%?\n) :empty-lines 1 :immediate-finish t)) Is there any obvious reason this template would break? I know I could read the capture documentation further but I don't have a few hours to spend on this right now (plus I'm extremely beginner with lisp). But I'm pretty sure it just broke with a recent pull of emacs without me changing any other settings. Thanks for any help, Damon p.s. Here's the complete config that I used to try to debug the problem. (require 'org-install) (add-to-list 'auto-mode-alist '(\\.\\(org\\|org_archive\\|txt\\)$ . org-mode)) (global-set-key \C-ca 'org-agenda) (global-set-key \C-cb 'org-iswitchb) (global-set-key (kbd C-c r) 'org-capture) ;; Capture templates for: TODO tasks, Notes, appointments, phone calls, and org-protocol (setq org-capture-templates (quote ((t todo entry (file ~/git/org/refile.org) * TODO %?\n%U\n%a\n %i :clock-in t :clock-resume t) (n note entry (file ~/git/org/refile.org) * %? :NOTE:\n%U\n%a\n %i :clock-in t :clock-resume t) (j Journal entry (file+datetree ~/git/org/diary.org) * %?\n%U\n %i :clock-in t :clock-resume t) (w org-protocol entry (file ~/git/org/refile.org) * TODO Review %c\n%U\n %i :immediate-finish t) (p Phone call entry (file ~/git/org/refile.org) * PHONE %? :PHONE:\n%U :clock-in t :clock-resume t) (h Habit entry (file ~/git/org/refile.org) * NEXT %?\n%U\n%a\nSCHEDULED: %t .+1d/3d\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n %i (add-to-list 'org-capture-templates ' (W Capture web snippet entry (file+headline ~/git/org/learn-emacs.org Emacs mastery) ,(concat * Fact: '%:description': (format %s org-drill-question-tag) :\n:PROPERTIES:\n:DATE_ADDED: %u\n:SOURCE_URL: %c\n:END:\n\n%i\n%?\n) :empty-lines 1 :immediate-finish t))
Re: [O] leave inactive timestamp inactive
Michael Brand michael.ch.br...@gmail.com writes: When one does Shift-right on an inactive timestamp it remains inactive. When one does C-c . S-right RET the inactive timestamp changes to active but I would like it also to remain inactive. What are the opinions on this? C-c . is the keystroke for inserting an active timestamp. Why would you want it to keep an inactive timestamp inactive? I'd use C-c ! S-right RET to do what you're suggesting. John
Re: [O] Invalid capture template with pull of Org 7.8.03?
Damon Haley n...@vinylisland.org wrote: Hi I was wondering if someone could point me in the right direction because one of my Org capture templates, that I use to feed questions to myself (for later use with org-drill) just broke with the most recent bzr pull of emacs. Probably not - see below. Now, when I try to use the capture template, I only get this header in my target org file. ** Invalid capture template I'm on the 24.0.92.1 version of emacs which ships with Org 7.8.03. Here's the template, which I stole from: http://orgmode.org/worg/org-contrib/org-drill.html (add-to-list 'org-capture-templates vvv ' THIS SHOULD BE A BACKQUOTE ^^^ (W Capture web snippet entry (file+headline ~/git/org/learn-emacs.org Emacs mastery) ,(concat * Fact: '%:description': (format %s org-drill-question-tag) :\n:PROPERTIES:\n:DATE_ADDED: %u\n:SOURCE_URL: %c\n:END:\n\n%i\n%?\n) :empty-lines 1 :immediate-finish t)) Is there any obvious reason this template would break? You are quoting the entry but including a , before the concat. That indicates that instead of the quote ', you need to use a backquote ` to allow the comma to evaluate the (concat ...) expression at definition time. I checked the webpage you refer to and there is a backquote there, so I can only surmise that you changed it by mistake recently. Nick
Re: [O] Way to replace normal tabular env with booktabs?
Hi John, The Library of Babel comes with your Org-mode distribution. You'll find it at /contrib/babel/library-of-babel.org In the org file, look for * Tables ** LaTeX Table Export There should be functions booktabs and booktabs-notes. One way to use booktabs is described here: http://orgmode.org/worg/org-tutorials/org-latex-export.html#sec-13-2 hth, Tom John Hendy jw.he...@gmail.com writes: On Thu, Jan 12, 2012 at 2:12 PM, Thomas S. Dye t...@tsdye.com wrote: Hi John, Agreed, booktabs makes good looking tables. Check out your Library of Babel. There should be a couple of functions there that will help you go from Org mode to booktabs. Haven't done much with babel other than writing code blocks. Do you mean this page? --- http://orgmode.org/worg/org-contrib/babel/library-of-babel.html Thanks for the suggestion. Feeling a bit lost, but am happy to look around for something that seems similar. I have no elisp-fu, so it'll need to be pretty darn similar :) John hth, Tom John Hendy jw.he...@gmail.com writes: Greetings, I was using wikibooks for some formatting assistance on tables the other day and ran into mention of the booktabs package in the Professional tables section. [1] [2] I really, really liked it's formatting, especially since one of my column headers was a fraction. The standard tabular package places the \hlines extremely close to the top and bottom of my header row vs., as the booktabs package says, having extremely nice looking spacing for the table. I ended up doing the table manually inside #+begin_latex block. Would there be any way to specify that booktabs should be used? The formatting is literally identical except for 1) including the booktabs package and 2) using \toprule, \midrule and \bottomrule instead of \hlines. In fact, even with booktabs included, if you use \hlines instead of the booktab specific lines, you'll get a regular tabular table. Any thoughts on this? Best regards, John - [1] http://en.wikibooks.org/wiki/LaTeX/Tables#Professional_tables [2] http://www.ctan.org/tex-archive/macros/latex/contrib/booktabs/ Greetings,I was using wikibooks for some formatting assistance on tables the other day and ran into mention of the booktabs package in the Professional tables section. [1] [2] I really, really liked it#39;s formatting, especially since one of my column headers was a fraction. The standard tabular package places the \hlines extremely close to the top and bottom of my header row vs., as the booktabs package says, having extremely nice looking spacing for the table. I ended up doing the table manually inside #+begin_latex block. Would there be any way to specify that booktabs should be used? The formatting is literally identical except for 1) including the booktabs package and 2) using \toprule, \midrule and \bottomrule instead of \hlines. In fact, even with booktabs included, if you use \hlines instead of the booktab specific lines, you#39;ll get a regular tabular table. Any thoughts on this?Best regards,John-[1] http://en.wikibooks.org/wiki/LaTeX/Tables#Professional_tables [2] http://www.ctan.org/tex-archive/macros/latex/contrib/booktabs/ -- Thomas S. Dye http://www.tsdye.com On Thu, Jan 12, 2012 at 2:12 PM, Thomas S. Dye span dir=ltrmailto:t...@tsdye.com/span wrote: Hi John, Agreed, booktabs makes good looking tables. Check out your Library of Babel. There should be a couple of functions there that will help you go from Org mode to booktabs. Haven#39;t done much with babel other than writing code blocks. Do you mean this page?--- http://orgmode.org/worg/org-contrib/babel/library-of-babel.html Thanks for the suggestion. Feeling a bit lost, but am happy to look around for something that seems similar. I have no elisp-fu, so it#39;ll need to be pretty darn similar :) John hth, Tom John Hendy mailto:jw.he...@gmail.com writes: Greetings, I was using wikibooks for some formatting assistance on tables the other day and ran into mention of the booktabs package in the Professional tables section. [1] [2] I really, really liked it#39;s formatting, especially since one of my column headers was a fraction. The standard tabular package places the \hlines extremely close to the top and bottom of my header row vs., as the booktabs package says, having extremely nice looking spacing for the table. I ended up doing the table manually inside #+begin_latex block. Would there be any way to specify that booktabs should be used? The formatting is literally identical except for 1) including the booktabs package and 2) using \toprule, \midrule and \bottomrule instead of \hlines. In fact, even with booktabs included, if you use \hlines instead of the booktab specific lines, you#39;ll get a regular tabular table. Any thoughts on this? Best regards, John - [1]
Re: [O] Invalid capture template with pull of Org 7.8.03?
Nick Dokos nicholas.do...@hp.com writes: You are quoting the entry but including a , before the concat. That indicates that instead of the quote ', you need to use a backquote ` to allow the comma to evaluate the (concat ...) expression at definition time. I checked the webpage you refer to and there is a backquote there, so I can only surmise that you changed it by mistake recently. Thanks Nick. You're probably right that I changed it some time ago and thought it was working, but it wasn't. Glad to have it working again. Damon -- ___ / -[]--. \ \/ I /\/ Y |_ I S |_ A |\| |} @ ssl-mail.com / ,-' `-. \ \ Send me long text - http://www.asciiribbon.org / ( o ) _) \ http://email.is-not-s.ms / `-._,-'_ /_/-.\ \/ I /\/ Y |_ I S |_ @ jabber.sdf.org Jabber me / __ _ \ \/ I /\/ Y |_ I S |_ . netlsd dot com Check out my PGP key /_\ -=-=-
[O] Help with elisp function
So, I made a small elisp function that basically creates a reference file in my org dir and indexes it in an org file, so it can be searchable with the agenda without the overhead of adding the file to the agenda list: (defun create-reference-file (filename title tags) Creates a new reference and file it (interactive (list (read-string Filename: ) (read-string Title: ) (read-string Tags: ) )) (set-buffer (get-buffer-create filename)) (beginning-of-buffer) (insert (concat * tags tags)) ;;saves the buffer (when (file-writable-p filename) (write-region (point-min) (point-max) (concat ~/org/data/dynamic_reference/ filename .org))) (set-buffer (find-file-noselect ~/org/gtd/reference.org)) (end-of-buffer) ;;(create-wiki-page filename) (insert (concat ** title tags :reference:file:\n)) (org-insert-time-stamp nil t nil) (insert \n) (insert (concat [[file://~/org/data/dynamic_reference/ filename .org]])) (insert \n) (save-buffer) ) I'm only beginning with elisp, so bear with me... Anyway, it works as expected, but I would like the tags prompt to be like the prompt org uses, with tags auto-completion and adding the : : automatically around the tags. Right now, I have to type the : around the words. Any hints appreciated! Marcelo.
Re: [O] org-babel order of evaluation
Rick Frankel r...@rickster.com writes: On Thu, Jan 12, 2012 at 04:35:31PM -0600, Leo Alekseyev wrote: Therefore, when executing an entire buffer, there is no way to have the execution of a call block dependent on the prior execution of a source block. It would be better to make the dependency explicit by passing the results of the call line as a (potentially unused) variable to the code block. For example; [snip] The problem w/ this is that the (potentially time consuming) dependent will be executed twice when doing a buffer eval. There is (at least currently) no guarantee that evaluation order will be buffer order. Is there some deep rationale for the current behavior that I'm not seeing? Are there big obstacles to enforcing ligeral execution order? It's because prior to 7.8, call blocks were not executed during a buffer execute. The solution was to execute all the call blocks after executing the src block. (Eric would have to comment on how hard it would be to merge the two functions :). Turns out it was not that difficult to change this behavior. You and Leo are both correct that in-buffer-order evaluation is more natural and expected than the previous behavior. I've just pushed up a fix after which evaluating the following #+Title: Execute all executables in Order #+Property: results silent #+name: foo #+BEGIN_SRC sh :var it=one echo $it debug #+END_SRC #+call: foo(two) #+BEGIN_SRC sh echo three debug #+END_SRC results in the creation of a debug file in the same directory reading; , | one | two | three ` Thanks for bringing this up, rick -- Eric Schulte http://cs.unm.edu/~eschulte/
[O] all org files load :recursive?
Coming back to org, I see Im using find-lisp-find-file to set org-agenda-files at each emacs start. Is there a better built in way to say load all org and gpg files under this directory than this? I'm not sure I follow the docstring for org-agenda-file-regexp as I kind of hope something like , | org-agenda-file-regexp is a variable defined in `org.el'. | Its value is \\(projects|\\.org|\\.gpg\\) ` would work, where projects is a sub dir containg org and gpg files under org-directory. Undoubtely my escaping is all wrong again. So, How best to achieve a recrusive load of all org and gpg files under org-directory now? Keep using find-lisp-find-files? thanks r.
Re: [O] org-babel order of evaluation
On Thu, Jan 12, 2012 at 06:07:41PM -0700, Eric Schulte wrote: Rick Frankel r...@rickster.com writes: Turns out it was not that difficult to change this behavior. You and Leo are both correct that in-buffer-order evaluation is more natural and expected than the previous behavior. I've just pushed up a fix after which evaluating the following Brillant! thank you Eric. This saves me much pain. rick
[O] Referring to the Last Row of a Remote Table using @
Hi, I have the following situation : #+TBLNAME: Totals |+| | Name | Amount | |+| | xyz| 90 | *-- should evaluate to 130, not 90* |+| | TOTAL || |+| #+TBLFM: @2$2=remote(xyz,@$4) *-- I'm trying to refer to the last row, 4th column in table xyz* #+TBLNAME: xyz |+--+--+| | Title | Description | Date | Amount | |+--+--+| | Trichy Tickets | Trichy Gig Travel| | 1200 | | PAID | | [2011-10-16 Sun] | -1000 | | Blah | Prior to Inorbit Gig | [2011-11-11 Fri] | 90 | | InOrbit Money | Payment for Gig | [2011-11-11 Fri] | -200 | | Biryani| Al-Saba | [2012-01-07 Sat] |120 | | Sub| Chicken Ham | [2012-01-12 Thu] |-75 | | Blah | I had asdad | [2012-01-12 Thu] | -5 | |+--+--+| | TOTAL | | |130 | |+--+--+| #+TBLFM: $4=vsum(@2..@-1) Instead of showing 130, the formula in the Totals table is showing 90. Upon some investigation, it becomes apparent that even though the formula * should* point to the last row in the remote table (value 130), @ in the remote table reference is actually evaluating to @3 (since the current table has 3 rows) instead of evaluating to @9 as expected (since the remote table has 9 rows). Is this a bug? or am I making some mistake in the formula. --- Sankalp
Re: [O] Referring to the Last Row of a Remote Table using @
Here's a screenshot, for those who cannot see the table spacing properly in the email http://imgur.com/4W75H --- Sankalp On 13 January 2012 07:42, Sankalp sankalpkh...@gmail.com wrote: Hi, I have the following situation : #+TBLNAME: Totals |+| | Name | Amount | |+| | xyz| 90 | *-- should evaluate to 130, not 90* |+| | TOTAL || |+| #+TBLFM: @2$2=remote(xyz,@$4) *-- I'm trying to refer to the last row, 4th column in table xyz* #+TBLNAME: xyz |+--+--+| | Title | Description | Date | Amount | |+--+--+| | Trichy Tickets | Trichy Gig Travel| | 1200 | | PAID | | [2011-10-16 Sun] | -1000 | | Blah | Prior to Inorbit Gig | [2011-11-11 Fri] | 90 | | InOrbit Money | Payment for Gig | [2011-11-11 Fri] | -200 | | Biryani| Al-Saba | [2012-01-07 Sat] |120 | | Sub| Chicken Ham | [2012-01-12 Thu] |-75 | | Blah | I had asdad | [2012-01-12 Thu] | -5 | |+--+--+| | TOTAL | | |130 | |+--+--+| #+TBLFM: $4=vsum(@2..@-1) Instead of showing 130, the formula in the Totals table is showing 90. Upon some investigation, it becomes apparent that even though the formula *should* point to the last row in the remote table (value 130), @ in the remote table reference is actually evaluating to @3 (since the current table has 3 rows) instead of evaluating to @9 as expected (since the remote table has 9 rows). Is this a bug? or am I making some mistake in the formula. --- Sankalp
Re: [O] Referring to the Last Row of a Remote Table using @
Hi, Just saw this : http://thread.gmane.org/gmane.emacs.orgmode/50991 Apologies for initiating a new thread when the issue was already being discussed. Sincerely, --- Sankalp On 13 January 2012 07:47, Sankalp sankalpkh...@gmail.com wrote: Here's a screenshot, for those who cannot see the table spacing properly in the email http://imgur.com/4W75H --- Sankalp On 13 January 2012 07:42, Sankalp sankalpkh...@gmail.com wrote: Hi, I have the following situation : #+TBLNAME: Totals |+| | Name | Amount | |+| | xyz| 90 | *-- should evaluate to 130, not 90* |+| | TOTAL || |+| #+TBLFM: @2$2=remote(xyz,@$4) *-- I'm trying to refer to the last row, 4th column in table xyz* #+TBLNAME: xyz |+--+--+| | Title | Description | Date | Amount | |+--+--+| | Trichy Tickets | Trichy Gig Travel| | 1200 | | PAID | | [2011-10-16 Sun] | -1000 | | Blah | Prior to Inorbit Gig | [2011-11-11 Fri] | 90 | | InOrbit Money | Payment for Gig | [2011-11-11 Fri] | -200 | | Biryani| Al-Saba | [2012-01-07 Sat] |120 | | Sub| Chicken Ham | [2012-01-12 Thu] |-75 | | Blah | I had asdad | [2012-01-12 Thu] | -5 | |+--+--+| | TOTAL | | |130 | |+--+--+| #+TBLFM: $4=vsum(@2..@-1) Instead of showing 130, the formula in the Totals table is showing 90. Upon some investigation, it becomes apparent that even though the formula *should* point to the last row in the remote table (value 130), @ in the remote table reference is actually evaluating to @3 (since the current table has 3 rows) instead of evaluating to @9 as expected (since the remote table has 9 rows). Is this a bug? or am I making some mistake in the formula. --- Sankalp
Re: [O] Using last row in remote table references
On 11 January 2012 23:04, Michael Brand michael.ch.br...@gmail.com wrote: Hi Phil On Tue, Jan 10, 2012 at 14:39, Phil (Philip) Mason phil.ma...@broadcom.com wrote: Should I be able to use @ in references to remote tables? Yes, this issue has been resolved by Carsten with release_7.7-420-g1432e4b I'm using org 7.8.03 but the issue is still there. Is there a syntax I should be using if I want to get all the entries in a table below a certain row without explicitly entering the number of the last row? The general solution for a Calc formula is e. g. with subvec as I described here: http://lists.gnu.org/archive/html/emacs-orgmode/2011-11/msg00562.html and in a similar sense as I described for subscr in the subsection Dynamic variation of ranges here: http://orgmode.org/worg/org-hacks.html#field-coordinates-in-formulas The general solution for a Lisp formula is e. g. with calc-subvector I guess. The following simpler solution is only possible when the range is relative to the field where the formula is evaluated in and when the offset to the range border is static: |---+-| | a | abc | | b | bcd | | c | cde | | d | | | e | | |---+-| #+TBLFM: @$2..@$2 = '(concat @0$1..@+2$1) With a remote table you can not use the simple solution. Michael As mentioned in my emails a while ago, @ still evaluates to the number of rows in the current table (from where the reference is being made) instead of the number of rows in the remote table being referenced. http://imgur.com/4W75H Sincerely, -- Sankalp
Re: [O] Using last row in remote table references
Hi Sankalp On Fri, Jan 13, 2012 at 04:30, Sankalp sankalpkh...@gmail.com wrote: I'm using org 7.8.03 but the issue is still there. I can not reproduce with release_7.8.02-13-g0c09a.dirty: || | Amount | || |130 | || || || #+TBLFM: @2$1=remote(xyz,@$1) #+TBLNAME: xyz || | -200 | |120 | |-75 | | -5 | |130 | || Maybe check your Org mode installation upgrade, make etc. Search for M-x locate-library RET org for more information. Michael
Re: [O] leave inactive timestamp inactive
Hi John On Fri, Jan 13, 2012 at 00:35, John Wiegley jwieg...@gmail.com wrote: Why would you want it to keep an inactive timestamp inactive? I'd like to update to today and keep inactive e. g. [2012-01-11 Wed] just below a heading or the property :Opened: [2012-01-11 Wed] left from a copy/paste. I'd use C-c ! S-right RET to do what you're suggesting. Of course, how could I miss that... When I think of it not as an edit but as a re-insert then C-c ! . RET becomes obvious for my use case. Thanks for bringing my brain back to work. Michael
[O] Question about repeating events.
I apologize in advance if this is the wrong forum for this question. I'm trying to set up repeating events to stop repeating after a given date. In this case it's classes I'm taking this semester that need to repeat once a week so I enter them like: *** Programming Workshop 2012-01-24 Tue 13:30-14:50 +1w, 2012-01-20 Fri 13:30-14:50 +1w The agenda shows the class being scheduled each tuesday and friday but I would like to tell it to stop repeating at the end of the semester. I didn't see anything helpful here: http://orgmode.org/manual/Repeated-tasks.html#Repeated-tasks The options I see here are using C-c C-x c to make a bunch of duplicate entries (which seems a little messy to me, but perhaps this is just how it's done) or simply marking the item as DONE at the end of the semester. The latter option seems a little weird to me too since it would make my agenda for the following semester cluttered if I was looking at it to plan future events. Is there an option I'm overlooking? Thank you, Peace ~Sam
Re: [O] Using last row in remote table references
Hi Michael, On 13 January 2012 09:21, Michael Brand michael.ch.br...@gmail.com wrote: Hi Sankalp On Fri, Jan 13, 2012 at 04:30, Sankalp sankalpkh...@gmail.com wrote: I'm using org 7.8.03 but the issue is still there. I can not reproduce with release_7.8.02-13-g0c09a.dirty: || | Amount | || |130 | || || || #+TBLFM: @2$1=remote(xyz,@$1) #+TBLNAME: xyz || | -200 | |120 | |-75 | | -5 | |130 | || Maybe check your Org mode installation upgrade, make etc. Search for M-x locate-library RET org for more information. Turns out it was indeed the issue. I was working on one of the machines where I still had an older version of org. Thanks, --- Sankalp
[O] Bug: ob-clojure.el depends on deprecated swank-clojure [7.7]
Phil Hagelberg has said that the swank-clojure elisp package has been deprecated and should not be used [1]. My version of ob-clojure.el requires swank-clojure. If I don't have the swank-clojure package, I get org-babel-execute:clojure:Cannot open load file: swank-clojure. If I follow the instructions at [2] and get the swank-clojure package, I get past this error. Is org using a deprecated package, and is this a bug? Thanks in advance. [1] https://groups.google.com/forum/#!starred/clojure/HT8wixvD3GE [2] http://lists.gnu.org/archive/html/emacs-orgmode/2011-12/msg00629.html Emacs : GNU Emacs 23.3.1 (i686-pc-linux-gnu, GTK+ Version 2.24.5) of 2011-08-14 on rothera, modified by Debian Package: Org-mode version 7.7 current state: == (setq org-export-latex-after-initial-vars-hook '(org-beamer-after-initial-vars) org-speed-command-hook '(org-speed-command-default-hook org-babel-speed-command-hook) org-metaup-hook '(org-babel-load-in-session-maybe) org-after-todo-state-change-hook '(org-clock-out-if-current) org-babel-tangle-lang-exts '((clojure . clj) (emacs-lisp . el)) org-export-latex-format-toc-function 'org-export-latex-format-toc-default org-tab-first-hook '(org-hide-block-toggle-maybe org-src-native-tab-command-maybe org-babel-hide-result-toggle-maybe) org-src-mode-hook '(org-src-babel-configure-edit-buffer org-src-mode-configure-edit-buffer) org-confirm-shell-link-function 'yes-or-no-p org-export-first-hook '(org-beamer-initialize-open-trackers) org-agenda-before-write-hook '(org-agenda-add-entry-text) org-blank-before-new-entry nil org-babel-pre-tangle-hook '(save-buffer) org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers org-cycle-show-empty-lines org-optimize-window-after-visibility-change) org-publish-project-alist '((org-notes :base-directory /home/notroot/org/ :base-extension org :publishing-directory /home/notroot/public_html/ :recursive t :publishing-function org-publish-org-to-html :headline-levels 4 :auto-preamble t) (org-static :base-directory /home/notroot/org/ :base-extension css\\|js\\|png\\|jpg\\|gif\\|pdf\\|mp3\\|ogg\\|swf :publishing-directory /home/notroot/public_html/ :recursive t :publishing-function org-publish-attachment) (org :components (org-notes org-static))) org-export-preprocess-before-normalizing-links-hook '(org-remove-file-link-modifiers) org-mode-hook '(#[nil \300\301\302\303\304$\207 [org-add-hook change-major-mode-hook org-show-block-all append local] 5] #[nil \300\301\302\303\304$\207 [org-add-hook change-major-mode-hook org-babel-show-result-all append local] 5] org-babel-result-hide-spec org-babel-hide-all-hashes) org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point org-babel-execute-safely-maybe) org-confirm-elisp-link-function 'yes-or-no-p org-export-interblocks '((lob org-babel-exp-lob-one-liners) (src org-babel-exp-inline-src-blocks)) org-clock-out-hook '(org-clock-remove-empty-clock-drawer) org-occur-hook '(org-first-headline-recenter) org-export-preprocess-before-selecting-backend-code-hook '(org-beamer-select-beamer-code) org-export-latex-final-hook '(org-beamer-amend-header org-beamer-fix-toc org-beamer-auto-fragile-frames org-beamer-place-default-actions-for-lists) org-metadown-hook '(org-babel-pop-to-session-maybe) org-export-blocks '((src org-babel-exp-src-block nil) (comment org-export-blocks-format-comment t) (ditaa org-export-blocks-format-ditaa nil) (dot org-export-blocks-format-dot nil)) )
Re: [O] Bug: ob-clojure.el depends on deprecated swank-clojure [7.7]
I personally no longer use Clojure (having graduated to Common Lisp :)) so I'm not abreast of the current Clojure environment. The only function ob-clojure uses from swank-clojure is `swank:interactive-eval-region' (used with `slime-eval') in the `org-babel-execute:clojure' function. Which function would now be used to evaluate a region of clojure code? Would `slime-eval-region' suffice? Thanks, Andrew Cheng ache...@gmail.com writes: Phil Hagelberg has said that the swank-clojure elisp package has been deprecated and should not be used [1]. My version of ob-clojure.el requires swank-clojure. If I don't have the swank-clojure package, I get org-babel-execute:clojure:Cannot open load file: swank-clojure. If I follow the instructions at [2] and get the swank-clojure package, I get past this error. Is org using a deprecated package, and is this a bug? Thanks in advance. [1] https://groups.google.com/forum/#!starred/clojure/HT8wixvD3GE [2] http://lists.gnu.org/archive/html/emacs-orgmode/2011-12/msg00629.html Emacs : GNU Emacs 23.3.1 (i686-pc-linux-gnu, GTK+ Version 2.24.5) of 2011-08-14 on rothera, modified by Debian Package: Org-mode version 7.7 current state: == (setq org-export-latex-after-initial-vars-hook '(org-beamer-after-initial-vars) org-speed-command-hook '(org-speed-command-default-hook org-babel-speed-command-hook) org-metaup-hook '(org-babel-load-in-session-maybe) org-after-todo-state-change-hook '(org-clock-out-if-current) org-babel-tangle-lang-exts '((clojure . clj) (emacs-lisp . el)) org-export-latex-format-toc-function 'org-export-latex-format-toc-default org-tab-first-hook '(org-hide-block-toggle-maybe org-src-native-tab-command-maybe org-babel-hide-result-toggle-maybe) org-src-mode-hook '(org-src-babel-configure-edit-buffer org-src-mode-configure-edit-buffer) org-confirm-shell-link-function 'yes-or-no-p org-export-first-hook '(org-beamer-initialize-open-trackers) org-agenda-before-write-hook '(org-agenda-add-entry-text) org-blank-before-new-entry nil org-babel-pre-tangle-hook '(save-buffer) org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers org-cycle-show-empty-lines org-optimize-window-after-visibility-change) org-publish-project-alist '((org-notes :base-directory /home/notroot/org/ :base-extension org :publishing-directory /home/notroot/public_html/ :recursive t :publishing-function org-publish-org-to-html :headline-levels 4 :auto-preamble t) (org-static :base-directory /home/notroot/org/ :base-extension css\\|js\\|png\\|jpg\\|gif\\|pdf\\|mp3\\|ogg\\|swf :publishing-directory /home/notroot/public_html/ :recursive t :publishing-function org-publish-attachment) (org :components (org-notes org-static))) org-export-preprocess-before-normalizing-links-hook '(org-remove-file-link-modifiers) org-mode-hook '(#[nil \300\301\302\303\304$\207 [org-add-hook change-major-mode-hook org-show-block-all append local] 5] #[nil \300\301\302\303\304$\207 [org-add-hook change-major-mode-hook org-babel-show-result-all append local] 5] org-babel-result-hide-spec org-babel-hide-all-hashes) org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point org-babel-execute-safely-maybe) org-confirm-elisp-link-function 'yes-or-no-p org-export-interblocks '((lob org-babel-exp-lob-one-liners) (src org-babel-exp-inline-src-blocks)) org-clock-out-hook '(org-clock-remove-empty-clock-drawer) org-occur-hook '(org-first-headline-recenter) org-export-preprocess-before-selecting-backend-code-hook '(org-beamer-select-beamer-code) org-export-latex-final-hook '(org-beamer-amend-header org-beamer-fix-toc org-beamer-auto-fragile-frames org-beamer-place-default-actions-for-lists) org-metadown-hook '(org-babel-pop-to-session-maybe) org-export-blocks '((src org-babel-exp-src-block nil) (comment org-export-blocks-format-comment t) (ditaa org-export-blocks-format-ditaa nil) (dot org-export-blocks-format-dot nil)) ) -- Eric Schulte http://cs.unm.edu/~eschulte/
