[O] Error with org-mode-reftex-setup after upgrade
Hi, I have just upgraded to version Org-mode version 8.2.6 (8.2.6-18-gaaae4a-elpaplus @ /home/loris/.emacs.d/elpa/org-plus-contrib-20140512/ From Thomas Dye's description of how to create an annotated bibliography (http://orgmode.org/worg/exporters/anno-bib-template-worg.html) I'm using: ,- | (defun org-mode-reftex-setup () | (interactive) | (load-library reftex) | (and (buffer-file-name) |(file-exists-p (buffer-file-name)) |(reftex-parse-all))) | | (add-hook 'org-mode-hook 'org-mode-reftex-setup) `- Following the update, this now seems to throw the error: , | Loading reftex...done | File mode specification error: (wrong-type-argument sequencep dwim) ` Any ideas? Cheers, Loris -- This signature is currently under construction.
[O] Preview tikz in org-mode (reduce margins of produced images)
Hi, everyone! I always use org-preview-latex-fragment command to preview the LaTeX code, which is awesome. It can effectively crop and suit the size of produced png to the content. However, recently I start to preview some tikz code. I can greatly produce the good results except one problem: The preview can never reduce the spare margin of the produced images, which left large blank space there. However, when I preview other LaTeX code after deleting tikz preamble, everything is fine. So is there anyone who has some idea to reduce the large margins? Leu
Re: [O] [Latex Export] Influence placement of \maketitle command
On 2014-05-16 06:19 Nick Dokos wrote: Alexander Baier alexander.ba...@mailbox.org writes: On 2014-05-15 21:57 Eric S Fraga wrote: I put it under its own heading with an :ignoreheading: tag and use the filter that was posted on this list (today in fact): I can't find the filter you are referring to. I guess it is in the org-ref thread? I did not follow that thread as org-ref seems to be a somewhat full-fledged solution including a lot of things I do not need. I looked through the thread but wasn't lucky to find said filter. Could you kindly post a link? (if that's not to much to ask) I don't have a link, but I have the following in an example file (which afaik still works fine): This works like charm, thanks! Suvayu's filter to get rid of :ignoreheading: tagged headlines - used in bib.org #+BEGIN_SRC emacs-lisp :results silent (defun sa-ignore-headline (contents backend info) Ignore headlines with tag `ignoreheading'. (when (and (org-export-derived-backend-p backend 'latex 'html 'ascii) (string-match \\`.*ignoreheading.*\n (downcase contents))) (replace-match nil nil contents))) (add-to-list 'org-export-filter-headline-functions 'sa-ignore-headline) #+END_SRC And thanks to Suvayu for providing this filter in the first place! Using #+include also largely resolves your original concern I think This is also a good idea. But for now my document is small enough to maintain it in a single org file. Regards, -- Alexander Baier
Re: [O] [PATCH] Empty inline tasks in latex export
Hello, R. Michael Weylandt michael.weyla...@gmail.com writes: If the body if the inline task is empty, org-latex-inlinetask writes nil in the exported document. This patch skips including contents (and the bar above it) if it's nil. Thank you for reporting it and providing this patch. I applied a slightly different version. Regards, -- Nicolas Goaziou
Re: [O] [Latex Export] Influence placement of \maketitle command
On Thursday, 15 May 2014 at 22:41, Alexander Baier wrote: On 2014-05-15 21:57 Eric S Fraga wrote: I put it under its own heading with an :ignoreheading: tag and use the filter that was posted on this list (today in fact): I can't find the filter you are referring to. I guess it is in the org-ref thread? I did not follow that thread as org-ref seems to be a somewhat full-fledged solution including a lot of things I do not need. I looked through the thread but wasn't lucky to find said filter. Could you kindly post a link? (if that's not to much to ask) Thanks, It was not in that thread and the email was tangentially about ignored headlines. I think it had to with beamer columns and generating articles. I'm offline currently so cannot check. In any case, this is what I use: (defun esf/remove-lines-with-ignore-heading-tag (backend) (message Deleting lines with ignore heading tag) (while (search-forward-regexp ^\\*+.*[ \t]+[a-ZA-Z0-9:]*:ignoreheading:[a-ZA-Z0-9:]*$ (point-max) t) (cond ((eq backend 'latex) (replace-match #+latex: % \\ )) ((eq backend 'html) (replace-match #+html: !-- \\ -- )) (t (replace-match ) (add-hook 'org-export-before-processing-hook 'esf/remove-lines-with-ignore-heading-tag) HTH, eric -- : Eric S Fraga (0xFFFCF67D), Emacs 24.3.1, Org release_8.2.6-937-g60502a
Re: [O] Centering graphics in LaTeX export
Hello, Francesco Pizzolante fpz-djc/ipccudyqhejpep6iedvlejwur...@public.gmane.org writes: Here's a small patch that enables centering graphics in LaTeX exports (as it already exists for tables). Thanks for this. A few, minor, comments follow. +(defcustom org-latex-images-centered t + When non-nil, images are exported in a center environment. + :group 'org-export-latex + :type 'boolean) You need to add :version 24.5 :package-version '(Org . 8.3) since this is a new variable. (comment-include (if (plist-get attr :comment-include) % )) ;; It is possible to specify width and height in the ;; ATTR_LATEX line, and also via default variables. + (centerp (if (plist-member attr :center) + (plist-get attr :center) + org-latex-images-centered)) I suggest to move the CENTERP binding above the previous comments. + path +(if centerp \\par}\n ) +)) No parens alone on a line, please. You also need to update manual and document the feature. Eventually, could you provide a proper commit message and send an updated patch? Regards, -- Nicolas Goaziou
Re: [O] [Latex Export] Influence placement of \maketitle command
On 2014-05-16 09:15 Eric S Fraga wrote: On Thursday, 15 May 2014 at 22:41, Alexander Baier wrote: On 2014-05-15 21:57 Eric S Fraga wrote: I put it under its own heading with an :ignoreheading: tag and use the filter that was posted on this list (today in fact): I can't find the filter you are referring to. I guess it is in the org-ref thread? I did not follow that thread as org-ref seems to be a somewhat full-fledged solution including a lot of things I do not need. I looked through the thread but wasn't lucky to find said filter. Could you kindly post a link? (if that's not to much to ask) Thanks, It was not in that thread and the email was tangentially about ignored headlines. I think it had to with beamer columns and generating articles. I'm offline currently so cannot check. Ah, well, neither did I follow that one. In any case, this is what I use: (defun esf/remove-lines-with-ignore-heading-tag (backend) (message Deleting lines with ignore heading tag) (while (search-forward-regexp ^\\*+.*[ \t]+[a-ZA-Z0-9:]*:ignoreheading:[a-ZA-Z0-9:]*$ (point-max) t) (cond ((eq backend 'latex) (replace-match #+latex: % \\ )) ((eq backend 'html) (replace-match #+html: !-- \\ -- )) (t (replace-match ) (add-hook 'org-export-before-processing-hook 'esf/remove-lines-with-ignore-heading-tag) HTH, eric Thank you for digging this up! I, however, already applied Suvayu's solution suggested by Nick that uses a headline filter. I see that your filter inserts the original headline in comments into the source document, which might be very helpful, in case you are using this for more than just two latex commands. Regards, -- Alexander Baier
[O] org-mode fontification error with newest git
Hi I get an org-mode fontification error for R when using the newest org From git. I have set (setq org-src-fontify-natively t) Unfortunately, I do not manage to get a backtrace. Cheers, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27 44 Fax (D):+49 - (0)3 21 21 25 22 44 email: rai...@krugs.de Skype: RMkrug PGP: 0x0F52F982 pgpihv_lYW0Hs.pgp Description: PGP signature
[O] solved: org-mode fontification error with newest git
Sorry for the noise - working. Was caused by inconsistent compilation of org and ess. Cheers, Rainer Rainer M Krug rai...@krugs.de writes: Hi I get an org-mode fontification error for R when using the newest org From git. I have set (setq org-src-fontify-natively t) Unfortunately, I do not manage to get a backtrace. Cheers, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27 44 Fax (D):+49 - (0)3 21 21 25 22 44 email: rai...@krugs.de Skype: RMkrug PGP: 0x0F52F982 pgpHTXkUgcxJq.pgp Description: PGP signature
Re: [O] [PATCH] Empty inline tasks in latex export
On May 16, 2014, at 4:39, Nicolas Goaziou n.goaz...@gmail.com wrote: Hello, R. Michael Weylandt michael.weyla...@gmail.com writes: If the body if the inline task is empty, org-latex-inlinetask writes nil in the exported document. This patch skips including contents (and the bar above it) if it's nil. Thank you for reporting it and providing this patch. I applied a slightly different version. Great, Thanks for this Michael
[O] Bug: Archive subtree with parent structure [7.9.3f (release_7.9.3f-17-g7524ef @ /usr/share/emacs/24.3/lisp/org/)]
This is not a bug report but a wishlist item. org-archive-subtree archives a subtree. * A ** AA *** AAA ** AB *** ABA Archiving AA will remove the subtree from the original file and create it like that in archive target: * AA ** AAA What I want (wish for) is to create it like that in the archive target: * A ** AA *** AAA If I also archive AB after that, it gets inserted in the structure which is now identical to the structure we started with. Use case: I tend to archive small pieces of a project's subtree long before I'm ready to archive the entire project. This way I build (want to build) an archived mirror of the project's subtree bit by bit. Thanks a lot to the org-mode developers. Emacs : GNU Emacs 24.3.1 (x86_64-unknown-linux-gnu, GTK+ Version 3.10.7) of 2014-01-28 on var-lib-archbuild-extra-x86_64-juergen Package: Org-mode version 7.9.3f (release_7.9.3f-17-g7524ef @ /usr/share/emacs/24.3/lisp/org/)
[O] Playwriitng with org?
Earlier I used to use troff and wrote play/drama-like pieces using that eg http://www.the-magus.in/Publications/ewd.pdf Later we switched to latex and using play.sty. Here is an example: http://www.the-magus.in/Publications/DotingOnTheDot.pdf I would now like to stay in org as much as possible and use latex as the backend — using maybe play.sty but there seem to be alternatives like dramatist.sty. Is this possible/easy/worthwhile? Thanks Rusi
Re: [O] Playwriitng with org?
Rustom Mody rustompm...@gmail.com writes: Earlier I used to use troff and wrote play/drama-like pieces using that eg http://www.the-magus.in/Publications/ewd.pdf Later we switched to latex and using play.sty. Here is an example: http://www.the-magus.in/Publications/DotingOnTheDot.pdf I would now like to stay in org as much as possible and use latex as the backend — using maybe play.sty but there seem to be alternatives like dramatist.sty. Is this possible/easy/worthwhile? Honestly I have no idea. But just in case you are not aware of it, there is a mode for screenwriters: https://www.youtube.com/watch?v=3DrUzXjJ9G1B4 (and severeal others here: http://www.emacswiki.org/emacs/ScreenPlay)
Re: [O] Preview tikz in org-mode (reduce margins of produced images)
Leu Zhe lzhe...@gmail.com writes: Hi, everyone! I always use org-preview-latex-fragment command to preview the LaTeX code, which is awesome. It can effectively crop and suit the size of produced png to the content. However, recently I start to preview some tikz code. I can greatly produce the good results except one problem: The preview can never reduce the spare margin of the produced images, which left large blank space there. However, when I preview other LaTeX code after deleting tikz preamble, everything is fine. So is there anyone who has some idea to reduce the large margins? It helps if you provide a small example: otherwise, even if one is willing to take a stab at it, one has to create one from scratch. Given that just about all of us have limited time, that reduces the probability that you will get an answer. Nick
Re: [O] [babel][PATCHES] ob-R patches for review
On Fri, 16 May 2014, Rainer M Krug wrote: Sorry for coming back to your suggestions so late, but I did some thinking about the approach. Comments inline below. No problem. I am about to leave town and my email for a couple of weeks, so I might not be able to reply to further correspondence till June. Comments inline below. Chuck Charles C. Berry ccbe...@ucsd.edu writes: On Mon, 12 May 2014, Rainer M Krug wrote: Eric Schulte schulte.e...@gmail.com writes: [...] [Rainer writes] My idea is to have all R code in one directory and to let ESS load it upon initialization of ESS (which is a dependency of running R from org anyway, if I am not mistaken). [Chuck] Not quite. You can run R src blocks without (require 'ess) if they require no session. (I do not claim that anyone actually runs R src blocks who lacks a working ESS installation, just saying...) [Rainer again] Hm - would it then be possible to add ESS as a requirement for running R code, as it is already mentioned on [1] as a requirement? I'd be surprised if it would have any impact on users. Who uses R and org-mode without ESS? But as you say it is listed as a requirement. [...] I am now leaning towards the following approach: New behavior (environment): 1) Define the R code in emacs variables, i.e. customizable in emacs. 2) Define a function to load the code into an R environment - not customizable. ## upon creation of the R session (i.e. only once for each R session) Maybe wait till the first variable transfer is called, if it ever is. 3) use the load function to load the code from the emacs variables into an R environment called org:functions 4) load all .R files in the directory ~/.orgFunctions/ into org:functions. This will mean that when functions of the same name as loaded earlier will be overwritten, i.e. the functions are customizable by R code only. ## before variable transfer at each execution of a code block Only if there is a variable transfer, of course. 5) source all .R files in the directory RWorkingDirectory/.orgFunctions/ i.e. they are not loaded into a specific environment. Reasoning: further customization possible, kind of an R package light approach. 6) use the load functions (as defied initially in (4), (3) or in () from to load the variables. If they are loaded into an environment or not depends on the definition of the functions. Concerning old versus new behavior, I would actually suggest to put this into the R functions: one could add an argument variablesInEnvironment which would, if set, be the name of the environment, i.e. default value org:variables, if NULL it would load into .GlobalEnv, i.e. the old behaviour. In org, one could have a variable org-babel-R-variable-transfer-type (or whatever the proper name should be) and to make it user configurable: - null :: old behaviour - org:variables (default) :: variables into environment called org:variables - other string :: name of the environment to be used As stated earlier, as I think that name clashes are more unlikely with the new approach, I would suggest to make org:variables the default. The above sounds good. If you do not wish to implement the `org-babel-R-assign-elisp-function' variable approach I suggested, I'll make it a TINYCHANGE when I return in June. It will not impact on what you propose. However, if your implementation makes it possible for arbitrary elisp variables to be handled in R - I might not bother. [...] True - but I like the simplicity of being able to customize the behavior of org-babel-R by writing an R function without having to thin about elisp. But maybe there is a way of doing both... noweb will do it. Quote the chunk like this: #+BEGIN_SRC emacs-lisp :noweb yes :tangle elisp-R.el (setq rlines r-code) #+END_SRC I must admit, I have never used macros and noweb expansion... If you could give me your opinions on this approach, I would look into implementing it. It is just a labor saving suggestion for you -- it would not show up in the final elisp. Put all your elisp and R code in src blocks in a *.org file. You can edit and format the R code in R src blocks and likewise the elisp. A src block like the one above will import the R into elisp as a string. You only tangle the elisp. So the benefit is you have ease of editting R and writing unit tests for it for R code that appears in elisp. IMO, noweb is a good way to mix languages in org-mode. I use the R `inline' package to write C functions that R can call. R needs the code as strings. I write the C code in C src blocks then assign it in as an R character string in an R src block. I can write an R wrapper and unit test for each little snippet of C code, then when it all looks good join up the snippets by putting multiple noweb references on successive lines. Footnotes: [1] http://orgmode.org/worg/org-contrib/babel/languages.html [...]
[O] FILE special property?
Hello, I’m looking to set up a search string using the FILE special property, but cannot get the syntax right. This is as part of setting up org-stuck-projects. If the file is in ~/todos/myTodos.org, and I want all the entries with heading 1, will (setq org-stuck-projects ‘(“+FILE=~/todos/myTodos.org+LEVEL=1 (NEXT TODO) nil ”)) work, or am I missing quotes there? Thanks! -- Boyan Penkov www.boyanpenkov.com
Re: [O] FILE special property?
On 2014-05-16 22:12 Boyan Penkov wrote: (setq org-stuck-projects ‘(“+FILE=~/todos/myTodos.org+LEVEL=1 (NEXT TODO) nil ”)) I have never used this feature, but this first element look odd to me. I would try this: “+FILE=\~/todos/myTodos.org\+LEVEL=1. HTH, -- Alexander Baier
Re: [O] Export to iCalendar only not DONE, scheduled tasks?
That's very helpful, thanks — I'll get experimenting. Cheers, Chris
[O] LaTeX cross references
G'day,
My org manuscript has cross references like this: see
[[id:4c473c51-b484-4a29-8fe7-118d8084a6f8][Limitations Acts]]
Exporting to LaTeX currently gives me: see
\hyperref[sec-4-3]{Limitations Acts}
What I would like is: \ref{sec-4-3} since I am trying to end up with a
Word file for an editor that will be (ultimately) a printed book.
I'm sure this is a simple variable somewhere, but I'm frustrated trying
to find it.
Any help appreciated.
Cheers,
Alan
--
Alan L Tyreehttp://www2.austlii.edu.au/~alan
Tel: 04 2748 6206 sip:typh...@iptel.org
Re: [O] LaTeX cross references
On 17/05/14 11:26, Aaron Ecay wrote:
Hi Alan,
2014ko maiatzak 16an, Alan L Tyree-ek idatzi zuen:
G'day,
My org manuscript has cross references like this: see
[[id:4c473c51-b484-4a29-8fe7-118d8084a6f8][Limitations Acts]]
Exporting to LaTeX currently gives me: see
\hyperref[sec-4-3]{Limitations Acts}
What I would like is: \ref{sec-4-3} since I am trying to end up with a
Word file for an editor that will be (ultimately) a printed book.
I'm sure this is a simple variable somewhere, but I'm frustrated trying
to find it.
I think you have two choices. The first is to remove the description
from the link, leaving just:
[[id:4c473c51-b484-4a29-8fe7-118d8084a6f8]]
Sadly, this is not very informative to look at.
The other is to use an export filter like the following to convert the
exporter’s output to the desired format:
#+BEGIN_SRC emacs-lisp
(defun awe-org-latex-filter-section-links (string backend plist)
(if (and (org-export-derived-backend-p backend 'latex)
(string-match hyperref\\[\\(sec-.*?\\)\\] string))
(let ((end-space (if (string-match-p \\' string) )))
(concat (format \\ref{%s} (match-string 1 string))
end-space))
string))
(add-to-list 'org-export-filter-link-functions
#'awe-org-latex-filter-section-links)
#+END_SRC
Hope this helps,
Hi Aaron,
I'm adding the reply to the list.
It helps immensely. I'll give the filter a try later this weekend.
Thanks for your help!
Alan
--
Aaron Ecay
--
Alan L Tyreehttp://www2.austlii.edu.au/~alan
Tel: 04 2748 6206 sip:typh...@iptel.org
Re: [O] FILE special property?
Thanks for your help, Alex. The backslashes do get the string to evaluate correctly (now the value of org-stuck-projects is indeed set to what you’d think it would be set to, where the first element is a string), but this does not yield the right output — C-c # still yields no output, and I do know there are projects I define as unfinished in the relevant file. When I crop out the +FILE=… part of the string, I get the output I’m expecting, so I’m pretty sure my problem is with the syntax of the FILE selector. Thanks! -- Boyan Penkov www.boyanpenkov.com On May 16, 2014, at 5:10 PM, Alexander Baier alexander.ba...@mailbox.org wrote: On 2014-05-16 22:12 Boyan Penkov wrote: (setq org-stuck-projects ‘(“+FILE=~/todos/myTodos.org+LEVEL=1 (NEXT TODO) nil ”)) I have never used this feature, but this first element look odd to me. I would try this: “+FILE=\~/todos/myTodos.org\+LEVEL=1. HTH, -- Alexander Baier
Re: [O] FILE special property?
Boyan Penkov boyan.pen...@gmail.com writes: Thanks for your help, Alex. The backslashes do get the string to evaluate correctly (now the value of org-stuck-projects is indeed set to what you’d think it would be set to, where the first element is a string), but this does not yield the right output — C-c # still yields no output, and I do know there are projects I define as unfinished in the relevant file. When I crop out the +FILE=… part of the string, I get the output I’m expecting, so I’m pretty sure my problem is with the syntax of the FILE selector. ~ is bash syntax. Try replacing it with the full path of your home directory. Thanks! -- Boyan Penkov www.boyanpenkov.com On May 16, 2014, at 5:10 PM, Alexander Baier alexander.ba...@mailbox.org wrote: On 2014-05-16 22:12 Boyan Penkov wrote: (setq org-stuck-projects ‘(“+FILE=~/todos/myTodos.org+LEVEL=1 (NEXT TODO) nil ”)) I have never used this feature, but this first element look odd to me. I would try this: “+FILE=\~/todos/myTodos.org\+LEVEL=1. HTH, -- Alexander Baier -- Nick
Re: [O] Preview tikz in org-mode (reduce margins of produced images)
Hi ndokos, Thanks for you advice. I added a attachment which matches my problem. Best regards! test.org Description: Binary data
