Re: A dream?
Hi Pedro, Do you mind to share those slides? I am teaching too and that will help me a lot Thanks in advance - Adolfo On Mon, Apr 17, 2023, at 23:35, Pedro Andres Aranda Gutierrez wrote: > > Jean Louis : > >> Eduardo Ochs [2023-04-16 01:45]: > >> do you have a page in https://gnu.support/ explaining in detail how > >> you teach Emacs to beginners? It would be nice to have something like > >> that... > > > >I just tell them to do Emacs Tutorial. There is no need for page when > >it is built-in. > > > >I tell them, open Emacs and do the tutorial, then let me know. Later > >we do not talk much, we just do the work. > > In addition to that, I have also collected a set of slides with suggestions > and > quick answers to some of the configuration hurdles. That helps a lot (they > say) > In addition, I have an article on org-mode. > I submitted to the (wrong) journal and never got published on paper ,-( > That was a couple of years ago and I have continued to update it for my > personal > reference. When people have specific interest in org-mode I pass > the lastest version in PDF and org for them to play around. The teaser for > this > is any of my lecture handouts. > > Best, /PA > > -- > Fragen sind nicht da, um beantwortet zu werden, > Fragen sind da um gestellt zu werden > Georg Kreisler > > Headaches with a Juju log: > unit-basic-16: 09:17:36 WARNING juju.worker.uniter.operation we should run a > leader-deposed hook here, but we can't yet
Re: Command not found when using Org + Guix + envrc.el
I am facing the same problem, hopefully some one can help us - A On Sun, Apr 16, 2023, at 08:56, Fabio Natali wrote: > Hi! > > I tend to set up my literate programming projects with: > > - Emacs and Org > - Guix, to install the dependencies and create a development environment > - direnv, to automatically load the Guix environment > - envrc.el, to use direnv from Emacs > > It's a great setup and I'm very grateful to the above projects, but > there are a few corner cases where things don't work as expected. > > For instance: > > - Define a Guix environment that includes Python (Python not being > installed on the system otherwise) > - Create an envrc file that activates the Guix environment, e.g. via > ~eval "$(guix shell --search-paths --manifest="$1")~ > - In the same folder, create an Org file with a Python block > > The block is evaluated correctly when a new Emacs instance is launched > from within the folder, and therefore from within the activated > environment. > > However, things don't work as expected when using emacsclient with an > existing Emacs server. Thanks to envrc.el the Guix environment gets > apparently activated in the buffer, as confirmed by the envrc flag in > the modeline and by the output of =(getenv "PATH")=. However, evaluating > the block results in the following error: > > #+begin_quote > /bin/bash: line 1: python: command not found > [ Babel evaluation exited with code 127 ] > #+end_quote > > Tangentially, if the block's header includes =:session=, as in > =#+begin_src python :session=, then the error is slightly different and > is displayed in the minibuffer as opposed to a separate buffer: > > #+begin_quote > make-process--with-editor-process-filter: Searching for program: No > such file or directory, python > #+end_quote > > Things work fine when manually setting =org-babel-python-command=, but > hardcoding the Guix store path is clearly inconvenient, to start with > it'd require constant update. > > #+begin_quote > (setq-local org-babel-python-command "/gnu/store/...") > #+end_quote > > Does anyone have any idea on how to investigate this further? I'm still > unsure whether this may have to do with envrc.el, Org Babel, or possibly > with some quirks in my configuration. > > Thanks, cheers, Fabio.
org-babel not finding executables when using direnv [Was: Re: ob-sql is not finding psql when using direnv+guix]
On Wed, May 12, 2021, at 08:49, Cook, Malcolm wrote:
> > > >I am using Guix with direnv.
> > >
> > > What is your shell?
> > >
> >
> > My shell is bash, originally I was using zsh and I thought that was the
> > problem, so I switched to bash and still not working.
> >
> > > How/When do you "hook direnv into your shell" (https://direnv.net/)?
> > >
> >
> > In the .profile file, at login.
> >
> > > > In an specific folder I am installing and using psql and postgresql
> > > > using direnv+guix as follows:
> > > >use guix --manifest=cdpp-manifest.scm
> > > >
> > > >export PGUSER=food_user
> > > >export PGPASSWORD=some_password
> > > >export PGDATABASE=food
> > > >
> > > >layout postgres
> > >
> > > When are you doing this?
> > >
> > > a) in the "specific folder"'s .envrc file?
> > > b) in an org-mode shell block that you execute prior to the sql block?
> > > c) ??
> >
> > Option (a)
> >
> >
> > > You seem to be following [Per\-project
> > > Postgres](https://jamey.thesharps.us/2019/05/29/per-project-postgres/)
> > > but with guix instead of nix. Nice.
> > >
> >
> > Yep, great post. direnv + guix change the way I develop software, do data
> > science and write lectures and papers.
> >
> > > If you enter the directory and then call emacs, earthing should just
> > > work, no changes neede.
> > >
> >
> > It works for almost everything (sql-buffers, python buffers, etc), except
> > for org-babel sql blocks.
> >
> > I am using EXWM, so emacs is always on.
> >
> >
> > > If you want to tell emacs to adopt the environment established by a
> > > .direnv, you probably want [direnv integration for
> > > emacs\.](https://github.com/wbolster/emacs-direnv)
> > >
> >
> > emacs-direnv was my first choice, but then I changed to envrc
> > (https://github.com/purcell/envrc) . In both I got the error.
> >
>
> I see. Envrc looks superior. Good to know.
>
> You've covered all my bases. Shooting in the dark, I would
> confirm/check the following:
>
I have news:
It fails for python too. Using the same files as before and this block:
#+begin_src python
import pandas as pd
import matplotlib.pyplot as plt
#+end_src
It finds matplotlib, but fails to find pandas. I tried the same trick as before
(but with the python executable, no psql), added the line
(org-babel-python-command . ".direnv/.guix-profile/bin/python3")
but is not working.
But if I am in shell, or in a python buffer or in a inferior-python process
Emacs is finding all the libraries and executables.
So, I am assumming that the problem lies in how org-babel searchs the path ...
Answers to your questions below:
> How do you know that envrc is working otherwise?
>
> When you switch to a direnv controlled buffer do you get any
> informative diagnostics in *Messages*?
>
Yes
> Do you get any more if you first `(setq envrc-debug t)`?
>
Didn't try, Will do later
> Is this buffer in the same directory as the .direnvrc file?
>
Yes
> Presumably TRAMP is not in the mix in any way.
>
No
> Variable sql-postgres-program is unchanged from default value of psql
>
> What is result of
>
> m-x shell-command
> which psql
>
Is empty when I am not in a direnv controlled directory, the correct path when
I enter to those directories.
> and does it change as expected/required depending on the current active
> .direnvrc?
>
> What happens if you eval (getenv 'psql) while in buffer governed by
> direnv, or alternatively
>
> m-x getenv
> psql
>
> If you `m-x shell`, does normal direnv work as expected in the created shell?
>
Yes, also works in vterm
> > > I've got to try this!
> > >
> > > Cheers
> > >
> >
> > Please tell me how that works for you
>
> Gotta get guix rolling again. Hope to do this RSN.
>
> Cheers,
>
> ~Malcolm
>
> >
> > Thanks
> >
> > - A
> >
> >
> > > >
> > > >
> > > >Where cdpp-manifest.scm contains the following:
> > > >
> > > >(specifications->manifest
> > > >'("python"
> > > > "python-pandas"
> > > > "python-numpy"
> > > > "python-flask"
> > > > "python-graphene"
> > > > "postgresql"
> > > > "jupyter"))
> > > >
> > > >I am able to use sql-mode and run queries against the database, in order
> > > >to achieve that I am using the following .dir-locals.el
> > > >
> > > >;;; Directory Local Variables
> > > >;;; For more information see (info "(emacs) Directory Variables")
> > > >
> > > >
> > > >((nil .
> > > > ((projectile-project-test-cmd . "pytest --color=no --failed-first
> > > >--maxfail=5")))
> > > >(python-mode .
> > > > ((python-shell-buffer-name . "Python
> > > >[CDPP-Inspecciones]")))
> > > >
> > > >(org-mode . (
> > > > (indent-tabs-mode . nil)
> > > > (org-src-preserve-indentation . t)
> > > > (org-footnote-auto-adjust . t)
> > > > (org-footnote-auto-label . t)
> > > > (ispell-local-dictionary . "spanish")
> > > > (org-export-allow-bind-keywords .
Re: ob-sql is not finding psql when using direnv+guix
Dear Malcom
On Mon, May 10, 2021, at 13:14, Cook, Malcolm wrote:
> >I am using Guix with direnv.
>
> What is your shell?
>
My shell is bash, originally I was using zsh and I thought that was the
problem, so I switched to bash and still not working.
> How/When do you "hook direnv into your shell" (https://direnv.net/)?
>
In the .profile file, at login.
> > In an specific folder I am installing and using psql and postgresql using
> > direnv+guix as follows:
> >use guix --manifest=cdpp-manifest.scm
> >
> >export PGUSER=food_user
> >export PGPASSWORD=some_password
> >export PGDATABASE=food
> >
> >layout postgres
>
> When are you doing this?
>
> a) in the "specific folder"'s .envrc file?
> b) in an org-mode shell block that you execute prior to the sql block?
> c) ??
>
>
Option (a)
> You seem to be following [Per\-project
> Postgres](https://jamey.thesharps.us/2019/05/29/per-project-postgres/)
> but with guix instead of nix. Nice.
>
Yep, great post. direnv + guix change the way I develop software, do data
science and write lectures and papers.
> If you enter the directory and then call emacs, earthing should just
> work, no changes neede.
>
It works for almost everything (sql-buffers, python buffers, etc), except for
org-babel sql blocks.
I am using EXWM, so emacs is always on.
> If you want to tell emacs to adopt the environment established by a
> .direnv, you probably want [direnv integration for
> emacs\.](https://github.com/wbolster/emacs-direnv)
>
emacs-direnv was my first choice, but then I changed to envrc
(https://github.com/purcell/envrc) . In both I got the error.
> I've got to try this!
>
> Cheers
>
Please tell me how that works for you
Thanks
- A
> >
> >
> >Where cdpp-manifest.scm contains the following:
> >
> >(specifications->manifest
> >'("python"
> > "python-pandas"
> > "python-numpy"
> > "python-flask"
> > "python-graphene"
> > "postgresql"
> > "jupyter"))
> >
> >I am able to use sql-mode and run queries against the database, in order to
> >achieve that I am using the following .dir-locals.el
> >
> >;;; Directory Local Variables
> >;;; For more information see (info "(emacs) Directory Variables")
> >
> >
> >((nil .
> > ((projectile-project-test-cmd . "pytest --color=no --failed-first
> >--maxfail=5")))
> >(python-mode .
> > ((python-shell-buffer-name . "Python [CDPP-Inspecciones]")))
> >
> >(org-mode . (
> > (indent-tabs-mode . nil)
> > (org-src-preserve-indentation . t)
> > (org-footnote-auto-adjust . t)
> > (org-footnote-auto-label . t)
> > (ispell-local-dictionary . "spanish")
> > (org-export-allow-bind-keywords . t)
> > (org-footnote-define-inline . nil)
> > (org-footnote-section . "Footnotes")))
> >
> >(sql-mode . ((sql-connection-alist . ((mydb
> > (sql-product 'postgres)
> > (sql-database "mydb")
> > (sql-user "db_user")
> > (sql-server (expand-file-name
> >".direnv/postgres"))
> > (sql-port 5432)
> > )
> > )
> >
> >But If I try to use an sql org-babel block
> >
> >#+begin_src sql
> >select 1;
> >#+end_src
> >
> >(I am setting the connection variables in a PROPERTY)
> >
> >I get the error: `psql is not found`
> >
> >
> >I was reading about the variable sql-postgres-program, so if I set the
> >following in dir-locals.el
> >
> >(sql-postgres-program .
> >"/gnu/store/f2v92bkx2vfzmkl14qxj3hlmby4dy9x0-profile/bin/psql")
> >
> >It works (note that psql ONLY lives inside the profile defined by
> >direnv+guix), but I don't like the idea of hardcode the path.
> >
> >Is there a better way?
> >
> >Ideally I will expect that the org block will read it from the environment,
> >but is not working.
> >
> >Thanks in advance
> >
>
ob-sql is not finding psql when using direnv+guix
Hi
I am using Guix with direnv. In an specific folder I am installing and using
psql and postgresql using direnv+guix as follows:
use guix --manifest=cdpp-manifest.scm
export PGUSER=food_user
export PGPASSWORD=some_password
export PGDATABASE=food
layout postgres
Where cdpp-manifest.scm contains the following:
(specifications->manifest
'("python"
"python-pandas"
"python-numpy"
"python-flask"
"python-graphene"
"postgresql"
"jupyter"))
I am able to use sql-mode and run queries against the database, in order to
achieve that I am using the following .dir-locals.el
;;; Directory Local Variables
;;; For more information see (info "(emacs) Directory Variables")
((nil .
((projectile-project-test-cmd . "pytest --color=no --failed-first
--maxfail=5")))
(python-mode .
((python-shell-buffer-name . "Python [CDPP-Inspecciones]")))
(org-mode . (
(indent-tabs-mode . nil)
(org-src-preserve-indentation . t)
(org-footnote-auto-adjust . t)
(org-footnote-auto-label . t)
(ispell-local-dictionary . "spanish")
(org-export-allow-bind-keywords . t)
(org-footnote-define-inline . nil)
(org-footnote-section . "Footnotes")))
(sql-mode . ((sql-connection-alist . ((mydb
(sql-product 'postgres)
(sql-database "mydb")
(sql-user "db_user")
(sql-server (expand-file-name
".direnv/postgres"))
(sql-port 5432)
)
)
But If I try to use an sql org-babel block
#+begin_src sql
select 1;
#+end_src
(I am setting the connection variables in a PROPERTY)
I get the error: `psql is not found`
I was reading about the variable sql-postgres-program, so if I set the
following in dir-locals.el
(sql-postgres-program .
"/gnu/store/f2v92bkx2vfzmkl14qxj3hlmby4dy9x0-profile/bin/psql")
It works (note that psql ONLY lives inside the profile defined by direnv+guix),
but I don't like the idea of hardcode the path.
Is there a better way?
Ideally I will expect that the org block will read it from the environment, but
is not working.
Thanks in advance
