Re: org-edit-src-exit randomizes / mixes up code in source-buffer on exit
Hello, thank you very much! Update to 27 solved the problem. All the best, Michael Am 22.06.2021 um 15:33 schrieb Sébastien Miquel: Hi, This has been reported before. There's a patch that fixes this here : https://lists.gnu.org/archive/html/emacs-orgmode/2021-06/msg7.html To fix this bug, you can can either apply this patch, downgrade org, or update emacs to 27. Could anyone with commit access have a look and apply this patch to master ? Regards,
org-edit-src-exit randomizes / mixes up code in source-buffer on exit
Hello, org-edit-src-exit suddenly completely destroys my code after coming back from vacation. No known recent changes in configuration. Very strange error! EXAMPLE: here a simple code before editing #+BEGIN_SRC R mtcars sum(mtcars$mpg, na.rm = TRUE) mean(mtcars$disp) #+END_SRC I enter to edit (org-edit-special), change the order of two lines and add a number: Result I should get in source buffer after exiting: #+BEGIN_SRC R mtcars mean(mtcars$disp) 123456789 sum(mtcars$mpg, na.rm = TRUE) #+END_SRC What I get in source buffer on org-edit-src-exit: (no joke!) #+BEGIN_SRC R rmtcars s ean(m sums$di(p)mt123456789 cars$mpg, na.rm = TRUE) mean #+END_SRC Came back from vacation and suddenly this happens. Only updates to server, elpa / melpa has not been updated the last three weeks. Emacs reinstallation did not help, launching without Emacs 26.1 build 2 (2021-01-31) modified by debian org version 9.4.6
[O] tangling files on export not working properly
Hello, When exporting my document to latex I want org-mode to tangle a few code blocks. #+NAME: tangle_files #+BEGIN_SRC emacs-lisp :exports results :eval query-export (org-babel-tangle-file "~/thesis/chapter/NH.org") #+END_SRC When I run the code block manually it works fine *Messages*: "Tangled 2 code blocks from NH.org" However, even though the is run on export, nothing gets tangled: "Tangled 0 code blocks from 04.NH.org" Is there any explanation for this? Anything I'm overlooking?
[O] org-mode latex export - Links in multi-document files
Hello, I have my PhD thesis divided into several documents (Intro, M&M, Results, Discussion...). The document setup and the #+INCLUDE: commands are in my master file. I sometimes make references to other sections which are in another section and document. In order to not compile all the document (3 minutes +) every time I just comment out all the documents I do not need to. If table and figure links are missing it exports fine (getting question marks in the pdf). However, the section links cause the compilation to stop entirely. Is there any workaround for that? Can I tell the exporter to ignore such minor missing crossreferences?
[O] Org-mode 9.0 : set tangle file in document PROPERTY
Hello, I noticed that in sections it is necessary to set :header-args: :tangle ~/filepath.R in the new org-mode version What is the syntax to set tangling for the whole file? #+PROPERTY: tangle ~/filepath.R does not work anymore... Thanks in advance for any help
[O] org-mode - export as folder structure possible?
Hello, I need to create a rather complex folder structure. It is OK to create that in dired but I think even nicer and faster it would be to create an org-mode outline which then exports this folder structure to the org document's directory. This could even be extended to create blank files with file extension within the directory - maybe communicated to the exporter with list items. Can the org-mode exporter be used or easily programmed for this kind of application? * Folder - Registry.xls - document.doc ** Subfolder *** Subsubfolder - some_document.txt ** Subfolder 2 * Another folder ** another one - document.file_extension - ListB.xlsx With that functionality I could really thoroughly create a decent folder structure. With many people working on the windows server it becomes quite chaotic. Thanks in advance for any answer.
[O] Bug: code block export [9.0 (9.0-elpaplus @ /home/mcg/.emacs.d/elpa/org-plus-contrib-20161102/)]
Hello,
I recently (max 3 weeks) noticed that latex code blocks are not exported
correctly anymore:
#+BEGIN_LaTeX
#+END_LaTeX
Export is:
\begin{LaTeX}
\end{LaTeX}
I do not recall having changed any setup.
Remember to cover the basics, that is, what you expected to happen and
what in fact did happen. You don't know how to make a good report? See
http://orgmode.org/manual/Feedback.html#Feedback
Your bug report will be posted to the Org mailing list.
Emacs : GNU Emacs 24.4.1 (x86_64-pc-linux-gnu, GTK+ Version 3.14.5)
of 2015-03-07 on trouble, modified by Debian
Package: Org mode version 9.0 (9.0-elpaplus @
/home/mcg/.emacs.d/elpa/org-plus-contrib-20161102/)
current state:
==
(setq
org-export-with-todo-keywords nil
org-export-backends '(ascii html icalendar latex freemind koma-letter)
org-latex-tables-booktabs t
org-latex-default-figure-position "!htbp"
org-ref-get-pdf-filename-function 'org-ref-get-pdf-filename
org-footnote-auto-adjust t
org-tab-first-hook '(org-babel-hide-result-toggle-maybe
org-babel-header-arg-expand)
org-adapt-indentation nil
org-latex-classes '(("article"
"\\documentclass[11pt,twoside,pointlessnumbers,headsepline]{scrartcl}\n[DEFAULT-PACKAGES]\n[PACKAGES]\n\n\\hypersetup{%\ncolorlinks
= false, %Colours links instead of ugly boxes\nlinkbordercolor=blue,
%hyperlink borders will be blue\nurlcolor = blue, %Colour for
external hyperlinks\nlinkcolor= red, %Colour of internal
links\ncitecolor = brown, %Colour of citations\ncitebordercolor =
brown, %Colour of citations\npdfborderstyle={/S/U/W 0.5} %border style
will be underline of width 0.5pt\n}\n\n\n[EXTRA] \n"
("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}"
. "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}")
("\\paragraph{%s}" . "\\paragraph*{%s}")
("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
("default-koma-letter" "\\documentclass[11pt]{scrlttr2}")
("letter"
"\\documentclass{scrlttr2}\n [DEFAULT-PACKAGES]\n
[NO-PACKAGES]")
("minimalRnw"
"\\documentclass{scrartcl}\n[NO-DEFAULT-PACKAGES]\n\\usepackage{hyperref}"
("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}"
. "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}")
("\\paragraph{%s}" . "\\paragraph*{%s}")
("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
("beamer" "\\documentclass[presentation]{beamer}"
("\\section{%s}" . "\\section*{%s}")
("\\subsection{%s}" . "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}"))
("report" "\\documentclass[11pt]{scrreprt}" ("\\part{%s}"
. "\\part*{%s}")
("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" .
"\\section*{%s}")
("\\subsection{%s}" . "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}"))
("book" "\\documentclass[11pt]{scrbook}" ("\\part{%s}" .
"\\part*{%s}")
("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" .
"\\section*{%s}")
("\\subsection{%s}" . "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}"))
)
org-footnote-section nil
org-calc-default-modes '(calc-internal-prec 12 calc-float-format
(float 5) calc-angle-mode deg calc-prefer-frac
nil calc-symbolic-mode nil calc-date-format ( "-" MM
"-" DD " " Www (" " hh ":" mm))
calc-display-working-message t)
org-speed-command-hook '(org-speed-command-default-hook
org-babel-speed-command-hook)
org-export-with-timestamps nil
org-agenda-diary-file "~/org/diary.org"
org-ref-pdf-directory "~/library/link/"
org-occur-hook '(org-first-headline-recenter)
org-src-tab-acts-natively t
org-metaup-hook '(org-babel-load-in-session-maybe)
org-agenda-start-on-weekday nil
org-html-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME
CONTENTS)"]
org-format-latex-options '(:foreground default :background "White"
:scale 1.2 :html-foreground "Black"
:html-ba
[O] Bug: Figure caption highlighting [8.3.6 (8.3.6-7-g4d7d52-elpaplus @ /home/mcg/.emacs.d/elpa/org-plus-contrib-20161017/)]
I am not sure if this qualifies as a bug:
When I use figure captions in org-mode I get:
#+CAPTION: Caption text is highlighted
#+CAPTION[Figure with short caption for LaTeX TOC export]: Caption text
is not highlighted
I know that the short-caption brackets are probably only intended for
LaTeX export. Is there an easy fix to get code highlighting for figures
with short captions?.
Emacs : GNU Emacs 24.4.1 (x86_64-pc-linux-gnu, GTK+ Version 3.14.5)
of 2015-03-07 on trouble, modified by Debian
Package: Org-mode version 8.3.6 (8.3.6-7-g4d7d52-elpaplus @
/home/mcg/.emacs.d/elpa/org-plus-contrib-20161017/)
current state:
==
(setq
org-export-with-todo-keywords nil
org-export-backends '(ascii html icalendar latex freemind koma-letter)
org-latex-tables-booktabs t
org-latex-default-figure-position "!htbp"
org-ref-get-pdf-filename-function 'org-ref-get-pdf-filename
org-tab-first-hook '(org-hide-block-toggle-maybe
org-babel-hide-result-toggle-maybe org-babel-header-arg-expand)
org-adapt-indentation nil
org-latex-classes '(("article"
"\\documentclass[11pt,twoside,pointlessnumbers,headsepline]{scrartcl}\n[DEFAULT-PACKAGES]\n[PACKAGES]\n\n\\hypersetup{%\ncolorlinks
= false, %Colours links instead of ugly boxes\nlinkbordercolor=blue,
%hyperlink borders will be blue\nurlcolor = blue, %Colour for
external hyperlinks\nlinkcolor= red, %Colour of internal
links\ncitecolor = brown, %Colour of citations\ncitebordercolor =
brown, %Colour of citations\npdfborderstyle={/S/U/W 0.5} %border style
will be underline of width 0.5pt\n}\n\n\n[EXTRA] \n"
("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}"
. "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}")
("\\paragraph{%s}" . "\\paragraph*{%s}")
("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
("default-koma-letter" "\\documentclass[11pt]{scrlttr2}")
("letter" "\\documentclass{scrlttr2}\n
[DEFAULT-PACKAGES]\n[NO-PACKAGES]")
("minimalRnw"
"\\documentclass{scrartcl}\n[NO-DEFAULT-PACKAGES]\n\\usepackage{hyperref}"
("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}"
. "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}")
("\\paragraph{%s}" . "\\paragraph*{%s}")
("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
("beamer" "\\documentclass[presentation]{beamer}"
("\\section{%s}" . "\\section*{%s}")
("\\subsection{%s}" . "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}"))
("report" "\\documentclass[11pt]{scrreprt}" ("\\part{%s}"
. "\\part*{%s}")
("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" .
"\\section*{%s}")
("\\subsection{%s}" . "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}"))
("book" "\\documentclass[11pt]{scrbook}" ("\\part{%s}" .
"\\part*{%s}") ("\\chapter{%s}" . "\\chapter*{%s}")
("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}"
. "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}"))
)
org-calc-default-modes '(calc-internal-prec 12 calc-float-format
(float 5) calc-angle-mode deg calc-prefer-frac nil
calc-symbolic-mode nil calc-date-format ( "-" MM "-"
DD " " Www (" " hh ":" mm))
calc-display-working-message t)
org-speed-command-hook '(org-speed-command-default-hook
org-babel-speed-command-hook)
org-export-with-timestamps nil
org-agenda-diary-file "~/org/diary.org"
org-ref-pdf-directory "~/library/link/"
org-occur-hook '(org-first-headline-recenter)
org-src-tab-acts-natively t
org-metaup-hook '(org-babel-load-in-session-maybe)
org-agenda-start-on-weekday nil
org-html-format-drawer-function '(lambda (name contents) contents)
org-format-latex-options '(:foreground default :background "White"
:scale 1.2 :html-foreground "Black" :html-background
"Transparent" :html-scale 1.0 :matchers ("begin" "$1"
"$" "$$" "\\(" "\\["))
org-src-window-setup 'current-window
org-latex-format-inli
Re: [O] Help with fixing an org-mode multicolumn implementation - LaTeX special characters
Hello Aaron,
[I noticed I did not answer to the list; just writing again to add it to
the list]
this fix works perfect! Thank you very much.
Never mind about multirow...
Michael
On 22/02/16 16:48, Aaron Ecay wrote:
Hi mcg,
2016ko otsailak 21an, mcg-ek idatzi zuen:
I found a very nice implementation of LaTeX multicolumn functionality in
this thread:
https://lists.gnu.org/archive/html/emacs-orgmode/2013-02/msg00736.html
[...]
However, using any of the characters of the left column of my example
table in the merged <2colc> column, I get:
"setq: Invalid use of `\' in replacement text"
I think the function should be written (untested):
(defun my-latex-multicolumn-filter (row backend info)
(when (org-export-derived-backend-p backend 'latex)
(while (string-match
"\\(<\\([0-9]+\\)col\\([lrc]\\)?>[[:blank:]]*\\([^&]+\\)\\)" row)
(let ((columns (string-to-number (match-string 2 row)))
(start (match-end 0))
(contents (replace-regexp-in-string "[[:blank:]]*$" ""
(match-string 4 row)))
(algn (or (match-string 3 row) "l")))
(setq row (replace-match
(format "\\multicolumn{%d}{%s}{%s}" columns algn contents)
nil t row 1))
(while (and (> columns 1) (string-match "&" row start))
(setq row (replace-match "" nil nil row))
(decf columns
row))
The change is setting the third argument (‘literal’) to ‘replace-match’
to t, and deleting an extra backslash in the "\\multicolumn..." string.
Questions:
- How to escape the special characters in the left column properly to be
able to use them? (tried everything I could think of)
or
- How to modify the code above so that it allows for such characters.
- If anyone likes the implementation and is more capable than I am, then
the same for multirow would be really nice...
Unfortunately I think that’s more complicated, since it would necessitate
examining/modifying the whole table in one go, rather than operating one
row at a time.
[O] Help with fixing an org-mode multicolumn implementation - LaTeX special characters
I found a very nice implementation of LaTeX multicolumn functionality in
this thread:
https://lists.gnu.org/archive/html/emacs-orgmode/2013-02/msg00736.html
("using export filters to emulate multi-column table cells?")
#+begin_src emacs-lisp :exports none
(defun my-latex-multicolumn-filter (row backend info)
(when (org-export-derived-backend-p backend 'latex)
(while (string-match
"\\(<\\([0-9]+\\)col\\([lrc]\\)?>[[:blank:]]*\\([^&]+\\)\\)" row)
(let ((columns (string-to-number (match-string 2 row)))
(start (match-end 0))
(contents (replace-regexp-in-string "[[:blank:]]*$" ""
(match-string 4 row)))
(algn (or (match-string 3 row) "l")))
(setq row (replace-match
(format "multicolumn{%d}{%s}{%s}" columns algn
contents)
nil nil row 1))
(while (and (> columns 1) (string-match "&" row start))
(setq row (replace-match "" nil nil row))
(decf columns
row))
(add-to-list 'org-export-filter-table-row-functions
'my-latex-multicolumn-filter)
#+end_src
#+LATEX_HEADER: \usepackage{multirow}
You have to put the number of columns to span and a r / l / c option for
column alignment (<2colc>) and the column contents afterwards. Nice!
#+CAPTION: Example table
| Characters not working| <2colc> Characters working: ! " § . ,
* + ? % | |
|---+---+--|
| ^ % _ { } $ | The header above is
merged| over two columns |
| /italics/ *bold* _underline_
| | |
| any, \LaTeX special character
| | |
| or expression requiring \
| | |
However, using any of the characters of the left column of my example
table in the merged <2colc> column, I get:
"setq: Invalid use of `\' in replacement text"
Questions:
- How to escape the special characters in the left column properly to be
able to use them? (tried everything I could think of)
or
- How to modify the code above so that it allows for such characters.
- If anyone likes the implementation and is more capable than I am, then
the same for multirow would be really nice...
Comment: whoever read some of my questions recently will notice that I
excessively use org-mode as a LaTeX frontend. I am aware that this is
not what it is supposed to be in the first place - but it works so
perfect 99 % of the time, so I cannot keep from asking...
[O] Inline code :results replace not working
Hello,
I use inline code for simple calculations to insert numeric results into
text apart from "normal" code blocks for more complex calculations and
graphics (all in R).
The :results replace option is not working for inline code, even if I
explicitly set it in the code block. So I get
#+PROPERTY: session *R*
#+begin_src R :results replace value
2+3
#+end_src
#+RESULTS:
: 5
src_R[:results replace value]{2+3} =5= =5= =5= =5= =5= =5=
I would really like to have numeric outcome in the buffer (not only
minibuffer upon evaluation) but also evaluate the whole buffer when
exporting to have everything updated.
What is the problem here? For now I would have to
- evaluate only on export and keep :results silent
- evaluate all manually - meaning I get repeated results if I call
org-evaluate buffer
Cheers,
Michael
System:
LMDE Update Pack 8 (jessie)
GNU Emacs 24.3.1 (x86_64-pc-linux-gnu, GTK+ Version 3.8.4) of 2013-09-27
on trouble, modified by Debian
Org version 8.2.10 (release_8.2.10-5-g20dcd0).
