Re: [O] [babel] [bug] inline src_R breaks downstream src block
Eric Schulte schulte.e...@gmail.com writes: It will probably be a couple of days before I have sufficient time to address these issues, but rest assured it is only my TODO list. Thanks for your persistence in fixing this! -- Bastien
Re: [O] [babel] [bug] inline src_R breaks downstream src block
Hi Chuck,
I just pushed up another fix, after which your example exports cleanly
on my system. Please give this another try and let me know if it is now
working for you as well.
Thanks -- Eric
Charles C. Berry ccbe...@ucsd.edu writes:
On Sun, 21 Aug 2011, Eric Schulte wrote:
I've just pushed up a change to org-exp-blocks which should fix Charles'
original problem related to conflict between inline and regular code
blocks. Please let me know if this problem persists in the latest git
HEAD.
Just updated to
Org-mode version 7.7 (release_7.7.167.gfceb.dirty)
And I get
[...]
Code block evaluation complete.
if: Args out of range: -1, -1
after typing C-c C-e A RET y
:-(
Chuck
Thanks -- Eric
Eric Schulte schulte.e...@gmail.com writes:
Bastien b...@altern.org writes:
Hi Charles,
yes, there are some problems with parsing inline source blocks.
Stephen also reported that these colon lines
: were $\beta_2$ = src_R{round(out3$coef[3], 4)}
: and $\beta_3$ = src_R{round(out3$coef[4], 4)}
where not exporting correctly... Eric, can you have a look at
these problems?
Thanks!
It will probably be a couple of days before I have sufficient time to
address these issues, but rest assured it is only my TODO list.
Thanks -- Eric
Charles C. Berry ccbe...@ucsd.edu writes:
,
| | * inline code block example
| | | AAA
| blah blah src_R[:results output]{cat(rnorm(2))}
| CC
| #+begin_src R :eval never :exports none
| 1+2
| a - b + c
| xyz
| #+end_src
|
`
When I run C-c C-e A y, I get a buffer that misses the 'DDD...' line.
When I run C-c C-e L y, I get a buffer that ends like this:
| AAA
| blah blah \texttt{-1.172165 -0.5324113}
| CC
| \begin{src}R DDD
| | \end{document}
`
More complicated examples exhibit other problems, I speculate that
parsing the inline src_R and setting up to find the next
#+begin_src...#+end_src instance is what has gone wrong.
FWIW, changing the :exports header to 'code' seems to give correct
results
Also, placing a dummy example like this:
,
| #+begin_example
| #+end_example
`
after the src_R line produces correct results.
Chuck
Charles C. BerryDept of Family/Preventive
Medicine
cbe...@tajo.ucsd.edu UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
--
Eric Schulte
http://cs.unm.edu/~eschulte/
Charles C. BerryDept of Family/Preventive Medicine
cbe...@tajo.ucsd.edu UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
--
Eric Schulte
http://cs.unm.edu/~eschulte/
Re: [O] [babel] [bug] inline src_R breaks downstream src block
On Mon, 22 Aug 2011, Eric Schulte wrote:
Hi Chuck,
I just pushed up another fix, after which your example exports cleanly
on my system. Please give this another try and let me know if it is now
working for you as well.
Org-mode version 7.7 (release_7.7.170.gcaaad.dirty) works fine on the
example.
Thanks,
Chuck
Thanks -- Eric
Charles C. Berry ccbe...@ucsd.edu writes:
On Sun, 21 Aug 2011, Eric Schulte wrote:
I've just pushed up a change to org-exp-blocks which should fix Charles'
original problem related to conflict between inline and regular code
blocks. Please let me know if this problem persists in the latest git
HEAD.
Just updated to
Org-mode version 7.7 (release_7.7.167.gfceb.dirty)
And I get
[...]
Code block evaluation complete.
if: Args out of range: -1, -1
after typing C-c C-e A RET y
:-(
Chuck
Thanks -- Eric
Eric Schulte schulte.e...@gmail.com writes:
Bastien b...@altern.org writes:
Hi Charles,
yes, there are some problems with parsing inline source blocks.
Stephen also reported that these colon lines
: were $\beta_2$ = src_R{round(out3$coef[3], 4)}
: and $\beta_3$ = src_R{round(out3$coef[4], 4)}
where not exporting correctly... Eric, can you have a look at
these problems?
Thanks!
It will probably be a couple of days before I have sufficient time to
address these issues, but rest assured it is only my TODO list.
Thanks -- Eric
Charles C. Berry ccbe...@ucsd.edu writes:
,
| | * inline code block example
| | | AAA
| blah blah src_R[:results output]{cat(rnorm(2))}
| CC
| #+begin_src R :eval never :exports none
| 1+2
| a - b + c
| xyz
| #+end_src
|
`
When I run C-c C-e A y, I get a buffer that misses the 'DDD...' line.
When I run C-c C-e L y, I get a buffer that ends like this:
| AAA
| blah blah \texttt{-1.172165 -0.5324113}
| CC
| \begin{src}R DDD
| | \end{document}
`
More complicated examples exhibit other problems, I speculate that
parsing the inline src_R and setting up to find the next
#+begin_src...#+end_src instance is what has gone wrong.
FWIW, changing the :exports header to 'code' seems to give correct
results
Also, placing a dummy example like this:
,
| #+begin_example
| #+end_example
`
after the src_R line produces correct results.
Chuck
Charles C. BerryDept of Family/Preventive Medicine
cbe...@tajo.ucsd.eduUC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
--
Eric Schulte
http://cs.unm.edu/~eschulte/
Charles C. BerryDept of Family/Preventive Medicine
cbe...@tajo.ucsd.eduUC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
--
Eric Schulte
http://cs.unm.edu/~eschulte/
Charles C. BerryDept of Family/Preventive Medicine
cbe...@tajo.ucsd.eduUC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
Re: [O] [babel] [bug] inline src_R breaks downstream src block
Charles C. Berry ccbe...@ucsd.edu writes:
And I get
[...]
Code block evaluation complete.
if: Args out of range: -1, -1
I have updated to latest Emacs bzr and org-git. Starting emacs with the
-q flag and trying the simple example src_R{1+1} I get the above error
when I use org-babel-exp-inline-src-blocks. Eval via C-c C-c works as
expected but when I export it halts due to
org-babel-exp-inline-src-blocks errors.
—Rasmus
--
Sent from my Emacs
Re: [O] [babel] [bug] inline src_R breaks downstream src block
Rasmus ras...@gmx.us writes:
Charles C. Berry ccbe...@ucsd.edu writes:
And I get
[...]
Code block evaluation complete.
if: Args out of range: -1, -1
I have updated to latest Emacs bzr and org-git. Starting emacs with the
-q flag and trying the simple example src_R{1+1} I get the above error
when I use org-babel-exp-inline-src-blocks. Eval via C-c C-c works as
expected but when I export it halts due to
org-babel-exp-inline-src-blocks errors.
I just tried the following with the latest Org-mode...
1. emacs -Q
2. evaluated the following elisp
#+begin_src emacs-lisp
(add-to-list 'load-path ~/.emacs.d/src/org/lisp)
(load-file ~/.emacs.d/src/org/lisp/org-install.el)
(load-file ~/.emacs.d/src/org/lisp/ob-sh.el)
#+end_src
3. exported the attached file to both html and ASCII, and everything
worked as expected
#+Title: something
#+OPTIONS: num:nil ^:nil
* inline code block example
Here is one src_sh{echo eric} and another src_sh{echo schulte} and
maybe even on more src_sh{echo patton}.
AAA
blah blah src_R[:results output]{cat(rnorm(2))}
CC
#+begin_src R :eval never :exports none
1+2
a - b + c
xyz
#+end_src
Perhaps the problem is specific to your system?
Cheers -- Eric
—Rasmus
--
Eric Schulte
http://cs.unm.edu/~eschulte/
Re: [O] [babel] [bug] inline src_R breaks downstream src block
Bastien b...@altern.org writes:
Hi Charles,
yes, there are some problems with parsing inline source blocks.
Stephen also reported that these colon lines
: were $\beta_2$ = src_R{round(out3$coef[3], 4)}
: and $\beta_3$ = src_R{round(out3$coef[4], 4)}
where not exporting correctly... Eric, can you have a look at
these problems?
Thanks!
It will probably be a couple of days before I have sufficient time to
address these issues, but rest assured it is only my TODO list.
Thanks -- Eric
Charles C. Berry ccbe...@ucsd.edu writes:
,
| | * inline code block example
| | | AAA
| blah blah src_R[:results output]{cat(rnorm(2))}
| CC
| #+begin_src R :eval never :exports none
| 1+2
| a - b + c
| xyz
| #+end_src
|
`
When I run C-c C-e A y, I get a buffer that misses the 'DDD...' line.
When I run C-c C-e L y, I get a buffer that ends like this:
| AAA
| blah blah \texttt{-1.172165 -0.5324113}
| CC
| \begin{src}R DDD
| | \end{document}
`
More complicated examples exhibit other problems, I speculate that
parsing the inline src_R and setting up to find the next
#+begin_src...#+end_src instance is what has gone wrong.
FWIW, changing the :exports header to 'code' seems to give correct
results
Also, placing a dummy example like this:
,
| #+begin_example
| #+end_example
`
after the src_R line produces correct results.
Chuck
Charles C. BerryDept of Family/Preventive
Medicine
cbe...@tajo.ucsd.edu UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
--
Eric Schulte
http://cs.unm.edu/~eschulte/
Re: [O] [babel] [bug] inline src_R breaks downstream src block
I've just pushed up a change to org-exp-blocks which should fix Charles'
original problem related to conflict between inline and regular code
blocks. Please let me know if this problem persists in the latest git
HEAD.
Thanks -- Eric
Eric Schulte schulte.e...@gmail.com writes:
Bastien b...@altern.org writes:
Hi Charles,
yes, there are some problems with parsing inline source blocks.
Stephen also reported that these colon lines
: were $\beta_2$ = src_R{round(out3$coef[3], 4)}
: and $\beta_3$ = src_R{round(out3$coef[4], 4)}
where not exporting correctly... Eric, can you have a look at
these problems?
Thanks!
It will probably be a couple of days before I have sufficient time to
address these issues, but rest assured it is only my TODO list.
Thanks -- Eric
Charles C. Berry ccbe...@ucsd.edu writes:
,
| | * inline code block example
| | | AAA
| blah blah src_R[:results output]{cat(rnorm(2))}
| CC
| #+begin_src R :eval never :exports none
| 1+2
| a - b + c
| xyz
| #+end_src
|
`
When I run C-c C-e A y, I get a buffer that misses the 'DDD...' line.
When I run C-c C-e L y, I get a buffer that ends like this:
| AAA
| blah blah \texttt{-1.172165 -0.5324113}
| CC
| \begin{src}R DDD
| | \end{document}
`
More complicated examples exhibit other problems, I speculate that
parsing the inline src_R and setting up to find the next
#+begin_src...#+end_src instance is what has gone wrong.
FWIW, changing the :exports header to 'code' seems to give correct
results
Also, placing a dummy example like this:
,
| #+begin_example
| #+end_example
`
after the src_R line produces correct results.
Chuck
Charles C. BerryDept of Family/Preventive
Medicine
cbe...@tajo.ucsd.eduUC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
--
Eric Schulte
http://cs.unm.edu/~eschulte/
Re: [O] [babel] [bug] inline src_R breaks downstream src block
Eric Schulte schulte.e...@gmail.com writes:
I've just pushed up a change to org-exp-blocks which should fix Charles'
original problem related to conflict between inline and regular code
blocks. Please let me know if this problem persists in the latest git
HEAD.
Thanks -- Eric
Eric Schulte schulte.e...@gmail.com writes:
Bastien b...@altern.org writes:
Hi Charles,
yes, there are some problems with parsing inline source blocks.
Stephen also reported that these colon lines
: were $\beta_2$ = src_R{round(out3$coef[3], 4)}
: and $\beta_3$ = src_R{round(out3$coef[4], 4)}
Inline source blocks like those above should now also be exporting as
expected.
Cheers -- Eric
--
Eric Schulte
http://cs.unm.edu/~eschulte/
Re: [O] [babel] [bug] inline src_R breaks downstream src block
On Sun, 21 Aug 2011, Eric Schulte wrote:
I've just pushed up a change to org-exp-blocks which should fix Charles'
original problem related to conflict between inline and regular code
blocks. Please let me know if this problem persists in the latest git
HEAD.
Just updated to
Org-mode version 7.7 (release_7.7.167.gfceb.dirty)
And I get
[...]
Code block evaluation complete.
if: Args out of range: -1, -1
after typing C-c C-e A RET y
:-(
Chuck
Thanks -- Eric
Eric Schulte schulte.e...@gmail.com writes:
Bastien b...@altern.org writes:
Hi Charles,
yes, there are some problems with parsing inline source blocks.
Stephen also reported that these colon lines
: were $\beta_2$ = src_R{round(out3$coef[3], 4)}
: and $\beta_3$ = src_R{round(out3$coef[4], 4)}
where not exporting correctly... Eric, can you have a look at
these problems?
Thanks!
It will probably be a couple of days before I have sufficient time to
address these issues, but rest assured it is only my TODO list.
Thanks -- Eric
Charles C. Berry ccbe...@ucsd.edu writes:
,
| | * inline code block example
| | | AAA
| blah blah src_R[:results output]{cat(rnorm(2))}
| CC
| #+begin_src R :eval never :exports none
| 1+2
| a - b + c
| xyz
| #+end_src
|
`
When I run C-c C-e A y, I get a buffer that misses the 'DDD...' line.
When I run C-c C-e L y, I get a buffer that ends like this:
| AAA
| blah blah \texttt{-1.172165 -0.5324113}
| CC
| \begin{src}R DDD
| | \end{document}
`
More complicated examples exhibit other problems, I speculate that
parsing the inline src_R and setting up to find the next
#+begin_src...#+end_src instance is what has gone wrong.
FWIW, changing the :exports header to 'code' seems to give correct
results
Also, placing a dummy example like this:
,
| #+begin_example
| #+end_example
`
after the src_R line produces correct results.
Chuck
Charles C. BerryDept of Family/Preventive Medicine
cbe...@tajo.ucsd.eduUC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
--
Eric Schulte
http://cs.unm.edu/~eschulte/
Charles C. BerryDept of Family/Preventive Medicine
cbe...@tajo.ucsd.eduUC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
Re: [O] [babel] [bug] inline src_R breaks downstream src block
Hi Charles,
yes, there are some problems with parsing inline source blocks.
Stephen also reported that these colon lines
: were $\beta_2$ = src_R{round(out3$coef[3], 4)}
: and $\beta_3$ = src_R{round(out3$coef[4], 4)}
where not exporting correctly... Eric, can you have a look at
these problems?
Thanks!
Charles C. Berry ccbe...@ucsd.edu writes:
,
| | * inline code block example
| | | AAA
| blah blah src_R[:results output]{cat(rnorm(2))}
| CC
| #+begin_src R :eval never :exports none
| 1+2
| a - b + c
| xyz
| #+end_src
|
`
When I run C-c C-e A y, I get a buffer that misses the 'DDD...' line.
When I run C-c C-e L y, I get a buffer that ends like this:
| AAA
| blah blah \texttt{-1.172165 -0.5324113}
| CC
| \begin{src}R DDD
| | \end{document}
`
More complicated examples exhibit other problems, I speculate that
parsing the inline src_R and setting up to find the next
#+begin_src...#+end_src instance is what has gone wrong.
FWIW, changing the :exports header to 'code' seems to give correct
results
Also, placing a dummy example like this:
,
| #+begin_example
| #+end_example
`
after the src_R line produces correct results.
Chuck
Charles C. BerryDept of Family/Preventive Medicine
cbe...@tajo.ucsd.edu UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
--
Bastien
[O] [babel] [bug] inline src_R breaks downstream src block
,
|
| * inline code block example
|
|
| AAA
| blah blah src_R[:results output]{cat(rnorm(2))}
| CC
| #+begin_src R :eval never :exports none
| 1+2
| a - b + c
| xyz
| #+end_src
|
`
When I run C-c C-e A y, I get a buffer that misses the 'DDD...' line.
When I run C-c C-e L y, I get a buffer that ends like this:
| AAA
| blah blah \texttt{-1.172165 -0.5324113}
| CC
| \begin{src}R DDD
|
| \end{document}
`
More complicated examples exhibit other problems, I speculate that
parsing the inline src_R and setting up to find the next
#+begin_src...#+end_src instance is what has gone wrong.
FWIW, changing the :exports header to 'code' seems to give correct
results
Also, placing a dummy example like this:
,
| #+begin_example
| #+end_example
`
after the src_R line produces correct results.
Chuck
Charles C. BerryDept of Family/Preventive Medicine
cbe...@tajo.ucsd.eduUC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
