Re: [O] Bug: [babel] Order of definition of :var makes or breaks the results [8.2.5f (release_8.2.5f-545-g630096 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)]

2014-01-22 Thread Rainer M Krug 
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Any confirmation of this bug?

Rainer

On 01/21/14, 15:17 , Rainer M Krug wrote:
> Depending on the order in which variables are declared, the
> definitions are correct or wrong.
> 
> In the example below, if DUMMY is declared first and SPECIES and 
> SPECIES2 are declared via :var+ there are missing rownames and /
> or colnames as well as mixups (see below).
> 
> If DUMMY is declared *after the first* table (SPECIES) everything
> works as expected.
> 
> I don't know if it is the same in other languages.
> 
> Example:
> 
> #+PROPERTY: rownames yes #+PROPERTY: colnames yes #+PROPERTY: var
> DUMMY="dummy"
> 
> * Species names and iespece codes #+NAME: SPECIES | |
> fullName| shortName | iespece | IFNName | color | 
> |-+-+---+-+-+---|
>
> 
| fagus   | Fagus sylvatica | fagus |   3 | fagus_sylvatica |
red   |
> | quercus | Quercus robur   | quercus   |   4 | quercus_robur
> | green | #+PROPERTY: var+ SPECIES=SPECIES
> 
> 
> * And some more #+NAME: SPECIES2 | | fullName  |
> shortName | iespece | IFNName   | color | 
> |-+---+---+-+---+---|
>
> 
| no idea |   |   | |   |   |
> | quercus | Quercus robur | quercus   |   4 | quercus_robur |
> green | #+PROPERTY: var+ SPECIES2=SPECIES2
> 
> 
> * The code #+begin_src R :exports both :results output SPECIES 
> #+end_src
> 
> #+RESULTS: :fullName shortName iespece
> IFNName color : no idea Fagus sylvatica fagus   3
> fagus_sylvatica   red : quercus   Quercus robur   quercus   4
> quercus_robur green
> 
> 
> #+begin_src R :exports both :results output SPECIES2 #+end_src
> 
> #+RESULTS: : X X.1   X.2   X.3 :
> Quercus robur quercus   4 quercus_robur green
> 
> 
> 
> Remember to cover the basics, that is, what you expected to happen
> and what in fact did happen.  You don't know how to make a good
> report?  See
> 
> http://orgmode.org/manual/Feedback.html#Feedback
> 
> Your bug report will be posted to the Org-mode mailing list. 
> 
>
> 
> 
> 
> Emacs  : GNU Emacs 24.3.1 (x86_64-apple-darwin13.0.0, NS
> apple-appkit-1265.00) of 2013-12-13 on Rainers-MacBook-Pro-2.local 
> Package: Org-mode version 8.2.5f (release_8.2.5f-545-g630096 @
> /Users/rainerkrug/.emacs.d/org-mode/lisp/)
> 
> current state: == (setq org-src-lang-modes
> '(("plantuml" . plantuml) ("ocaml" . tuareg) ("elisp" . emacs-lisp)
> ("ditaa" . artist) ("asymptote" . asy) ("dot" . fundamental)
> ("sqlite" . sql) ("calc" . fundamental) ("C" . c) ("cpp" . c++)
> ("C++" . c++) ("screen" . shell-script)) org-hide-leading-stars t 
> org-tab-first-hook '(org-hide-block-toggle-maybe
> org-src-native-tab-command-maybe
> org-babel-hide-result-toggle-maybe org-babel-header-arg-expand) 
> org-speed-command-hook '(org-speed-command-default-hook
> org-babel-speed-command-hook) org-ellipsis "〖 ✎ 〗" org-occur-hook
> '(org-first-headline-recenter) org-src-tab-acts-natively t 
> org-metaup-hook '(org-babel-load-in-session-maybe) 
> org-html-format-drawer-function '(lambda (name contents) contents) 
> org-src-window-setup 'current-window 
> org-latex-format-inlinetask-function 'ignore 
> org-confirm-shell-link-function 'y-or-n-p 
> org-ascii-format-inlinetask-function
> 'org-ascii-format-inlinetask-default 
> org-latex-format-headline-function
> 'org-latex-format-headline-default-function org-startup-indented t 
> org-after-todo-state-change-hook '(org-clock-out-if-current) 
> org-latex-format-drawer-function '(lambda (name contents)
> contents) org-odt-format-headline-function 'ignore 
> org-from-is-user-regexp "\\" org-src-mode-hook
> '(org-src-babel-configure-edit-buffer
> org-src-mode-configure-edit-buffer) org-agenda-before-write-hook
> '(org-agenda-add-entry-text) org-babel-pre-tangle-hook
> '(save-buffer) org-mode-hook '(#[nil "\300\301\302\303\304$\207"
> [org-add-hook change-major-mode-hook org-show-block-all append
> local] 5] #[nil "\300\301\302\303\304$\207" [org-add-hook
> change-major-mode-hook org-babel-show-result-all append local] 5] 
> org-babel-result-hide-spec org-babel-hide-all-hashes) 
> org-ascii-format-drawer-function '(lambda (name contents width)
> contents) org-odt-format-inlinetask-function 'ignore 
> org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point
> org-babel-execute-safely-maybe) org-cycle-hook
> '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
> org-cycle-hide-inline-tasks org-cycle-show-empty-lines 
> org-optimize-window-after-visibility-change) org-plantuml-jar-path
> "/Users/rainerkrug/jar/plantuml.jar" org-latex-packages-alist '((""
> "color") ("" "listings")) org-ctrl-k-protect-subtree "ask" 
> org-babel-tangle-lang-exts '(("latex" . "tex") ("emacs-lisp" .
> "el")) org-confirm-elisp-link-

[O] Bug: [babel] Order of definition of :var makes or breaks the results [8.2.5f (release_8.2.5f-545-g630096 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)]

2014-01-21 Thread Rainer M Krug 
Depending on the order in which variables are declared, the definitions
are correct or wrong.

In the example below, if DUMMY is declared first and SPECIES and
SPECIES2 are declared via :var+ there are missing rownames and / or
colnames as well as mixups (see below).

If DUMMY is declared *after the first* table (SPECIES) everything works
as expected.

I don't know if it is the same in other languages.

Example:

#+PROPERTY: rownames yes
#+PROPERTY: colnames yes
#+PROPERTY: var DUMMY="dummy"

* Species names and iespece codes
#+NAME: SPECIES
| | fullName| shortName | iespece | IFNName | color |
|-+-+---+-+-+---|
| fagus   | Fagus sylvatica | fagus |   3 | fagus_sylvatica | red   |
| quercus | Quercus robur   | quercus   |   4 | quercus_robur   | green |
#+PROPERTY: var+ SPECIES=SPECIES


* And some more
#+NAME: SPECIES2
| | fullName  | shortName | iespece | IFNName   | color |
|-+---+---+-+---+---|
| no idea |   |   | |   |   |
| quercus | Quercus robur | quercus   |   4 | quercus_robur | green |
#+PROPERTY: var+ SPECIES2=SPECIES2


* The code
#+begin_src R :exports both :results output
SPECIES
#+end_src

#+RESULTS:
:fullName shortName iespece IFNName color
: no idea Fagus sylvatica fagus   3 fagus_sylvatica   red
: quercus   Quercus robur   quercus   4   quercus_robur green


#+begin_src R :exports both :results output
SPECIES2
#+end_src

#+RESULTS:
: X X.1   X.2   X.3
: Quercus robur quercus   4 quercus_robur green



Remember to cover the basics, that is, what you expected to happen and
what in fact did happen.  You don't know how to make a good report?  See

 http://orgmode.org/manual/Feedback.html#Feedback

Your bug report will be posted to the Org-mode mailing list.




Emacs  : GNU Emacs 24.3.1 (x86_64-apple-darwin13.0.0, NS apple-appkit-1265.00)
 of 2013-12-13 on Rainers-MacBook-Pro-2.local
Package: Org-mode version 8.2.5f (release_8.2.5f-545-g630096 @ 
/Users/rainerkrug/.emacs.d/org-mode/lisp/)

current state:
==
(setq
 org-src-lang-modes '(("plantuml" . plantuml) ("ocaml" . tuareg) ("elisp" . 
emacs-lisp) ("ditaa" . artist) ("asymptote" . asy)
  ("dot" . fundamental) ("sqlite" . sql) ("calc" . 
fundamental) ("C" . c) ("cpp" . c++) ("C++" . c++)
  ("screen" . shell-script))
 org-hide-leading-stars t
 org-tab-first-hook '(org-hide-block-toggle-maybe 
org-src-native-tab-command-maybe org-babel-hide-result-toggle-maybe
  org-babel-header-arg-expand)
 org-speed-command-hook '(org-speed-command-default-hook 
org-babel-speed-command-hook)
 org-ellipsis "〖 ✎ 〗"
 org-occur-hook '(org-first-headline-recenter)
 org-src-tab-acts-natively t
 org-metaup-hook '(org-babel-load-in-session-maybe)
 org-html-format-drawer-function '(lambda (name contents) contents)
 org-src-window-setup 'current-window
 org-latex-format-inlinetask-function 'ignore
 org-confirm-shell-link-function 'y-or-n-p
 org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask-default
 org-latex-format-headline-function 'org-latex-format-headline-default-function
 org-startup-indented t
 org-after-todo-state-change-hook '(org-clock-out-if-current)
 org-latex-format-drawer-function '(lambda (name contents) contents)
 org-odt-format-headline-function 'ignore
 org-from-is-user-regexp "\\"
 org-src-mode-hook '(org-src-babel-configure-edit-buffer 
org-src-mode-configure-edit-buffer)
 org-agenda-before-write-hook '(org-agenda-add-entry-text)
 org-babel-pre-tangle-hook '(save-buffer)
 org-mode-hook '(#[nil "\300\301\302\303\304$\207" [org-add-hook 
change-major-mode-hook org-show-block-all append local] 5]
 #[nil "\300\301\302\303\304$\207" [org-add-hook 
change-major-mode-hook org-babel-show-result-all append local] 5]
 org-babel-result-hide-spec org-babel-hide-all-hashes)
 org-ascii-format-drawer-function '(lambda (name contents width) contents)
 org-odt-format-inlinetask-function 'ignore
 org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point 
org-babel-execute-safely-maybe)
 org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers 
org-cycle-hide-inline-tasks org-cycle-show-empty-lines
  org-optimize-window-after-visibility-change)
 org-plantuml-jar-path "/Users/rainerkrug/jar/plantuml.jar"
 org-latex-packages-alist '(("" "color") ("" "listings"))
 org-ctrl-k-protect-subtree "ask"
 org-babel-tangle-lang-exts '(("latex" . "tex") ("emacs-lisp" . "el"))
 org-confirm-elisp-link-function 'yes-or-no-p
 org-metadown-hook '(org-babel-pop-to-session-maybe)
 org-odt-format-drawer-function '(lambda (name contents) contents)
 org-latex-listings t
 org-show-siblings '((default) (i