Re: [O] Implementing Reproducible Research
Aloha Christophe, Chapter 8, Reproducible Research for Large-Scale Data Analysis, by Holger Hoefling and Anthony Rossini uses Org mode for literate programming and for reproducible research. The article focuses on the challenges faced by a large-scale data analysis, where the full R code base might run hours or days to produce a final result. The working solution involves a program, makepp, that implements make based on hash codes of files, rather than timestamps, which change with every tangling. Org mode was clearly central to the work. It is favorably compared to the tools sweave and knitr familiar to R programmers. Thanks for pointing this out. All the best, Tom Christophe Pouzat christophe.pou...@gmail.com writes: Hi All, The book Implementing Reproducible Research edited by V. Stodden, F. Leisch and R. D. Peng came out last month (I don't have a copy) and I just found out that you can get the chapters (in PDF) from the editors' site: https://osf.io/s9tya/ I did not have enough time to go trhough all of it but org is mentioned a couple of times! Christophe -- A Master Carpenter has many tools and is expert with most of them. If you only know how to use a hammer, every problem starts to look like a nail. Stay away from that trap. Richard B Johnson. -- Christophe Pouzat MAP5 - Mathématiques Appliquées à Paris 5 CNRS UMR 8145 45, rue des Saints-Pères 75006 PARIS France tel: +33142863828 mobile: +33662941034 web: http://xtof.disque.math.cnrs.fr Hi All, The book Implementing Reproducible Research edited by V. Stodden, F. Leisch and R. D. Peng came out last month (I don't have a copy) and I just found out that you can get the chapters (in PDF) from the editors' site: https://osf.io/s9tya/ I did not have enough time to go trhough all of it but org is mentioned a couple of times! Christophe -- Thomas S. Dye http://www.tsdye.com
[O] Implementing Reproducible Research
Hi All, The book Implementing Reproducible Research edited by V. Stodden, F. Leisch and R. D. Peng came out last month (I don't have a copy) and I just found out that you can get the chapters (in PDF) from the editors' site: https://osf.io/s9tya/ I did not have enough time to go trhough all of it but org is mentioned a couple of times! Christophe -- A Master Carpenter has many tools and is expert with most of them. If you only know how to use a hammer, every problem starts to look like a nail. Stay away from that trap. Richard B Johnson. -- Christophe Pouzat MAP5 - Mathématiques Appliquées à Paris 5 CNRS UMR 8145 45, rue des Saints-Pères 75006 PARIS France tel: +33142863828 mobile: +33662941034 web: http://xtof.disque.math.cnrs.fr
[O] Implementing Reproducible Research
Hi all, I've just seen that a book, Implementing Reproducible Researchhttp://www.amazon.com/Implementing-Reproducible-Research-Chapman-Series/dp/1466561599, edited by V. Stodden, F. Leisch and R. Peng is coming out next year from CRC. I was wondering if anyone has written a chapter presenting org for it. Any clue? Christophe -- A Master Carpenter has many tools and is expert with most of them. If you only know how to use a hammer, every problem starts to look like a nail. Stay away from that trap. Richard B Johnson. -- Christophe Pouzat MAP5 - Mathématiques Appliquées à Paris 5 CNRS UMR 8145 45, rue des Saints-Pères 75006 PARIS France tel: +33142863828 mobile: +33662941034 web: http://xtof.disque.math.cnrs.fr
Re: [O] Implementing Reproducible Research
Aloha Christophe, Thanks for spotting this. I don't know if anyone has written a chapter presenting org. I haven't seen anything on the ML. All the best, Tom Christophe Pouzat christophe.pou...@gmail.com writes: Hi all, I've just seen that a book, Implementing Reproducible Researchhttp://www.amazon.com/Implementing-Reproducible-Research-Chapman-Series/dp/1466561599, edited by V. Stodden, F. Leisch and R. Peng is coming out next year from CRC. I was wondering if anyone has written a chapter presenting org for it. Any clue? Christophe -- A Master Carpenter has many tools and is expert with most of them. If you only know how to use a hammer, every problem starts to look like a nail. Stay away from that trap. Richard B Johnson. -- Christophe Pouzat MAP5 - Mathématiques Appliquées à Paris 5 CNRS UMR 8145 45, rue des Saints-Pères 75006 PARIS France tel: +33142863828 mobile: +33662941034 web: http://xtof.disque.math.cnrs.fr Hi all, I've just seen that a book, Implementing Reproducible Research, edited by V. Stodden, F. Leisch and R. Peng is coming out next year from CRC. I was wondering if anyone has written a chapter presenting org for it. Any clue? Christophe -- Thomas S. Dye http://www.tsdye.com
