Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
OK back at the office computer . . .
In org version 7.9.3f on Windows XP, my C-c C-e is bound to org-export.
I guess that's the old exporter.
The org-related parts of my .eamcs are below. Clearly not the most
elegant .emacs file--I'm still pretty new at this!
--
;; Load org-mode
(add-to-list 'load-path c:/Org/org-7.9.3f/lisp)
(add-to-list 'load-path c:/Org/org-7.9.3f/contrib/lisp)
(require 'org)
;; The following lines are always needed. Choose your own keys.
(add-to-list 'auto-mode-alist '(\\.org\\' . org-mode))
(add-hook 'org-mode-hook 'turn-on-font-lock) ; not needed when
global-font-lock-mode is on
(global-set-key \C-cl 'org-store-link)
(global-set-key \C-ca 'org-agenda)
(global-set-key \C-cb 'org-iswitchb)
;; Capture
(global-set-key (kbd C-c r) 'org-capture)
(setq org-default-notes-file (concat org-directory /junknotes.org))
(setq org-capture-templates
'((t Agenda Todo entry
(file+headline c:/Org/junk1.org Agenda)
\n\n** TODO %?\n%T\n\n%i\n%a\n\n\n
:empty-lines 1)
(n Agenda Notes entry
(file c:/Org/junk1.org)
\n\n** %?\n%T\n%i\n%a\n\n\n
:empty-lines 1)
(a admission entry
(file c:/DATA/MedicalShelterAdmissions.org)
\n\n* IN %^{LAST NAME, first name}
%^{IDnumber}p %^{Birthdate}p %^{Age}p %^{Doctor1}p
%^{Adress1}p %^{Address2}p %^{City}p
%U
:empty-lines 1)
))
;;
;; set-up for use as a medical shelter record
;;
;; I've attempted to remove redundancies with capture settings that
appear above this point
'(org-agenda-files (quote (~/Shelter/ShelterAdmissions.org
~/DATA/BookIdeas.org ~/orgjunk.org)))
(setq org-default-notes-file (concat ~/notes.org))
(defun prompt-for-lastname-and-upcase ()
(upcase (read-string Last name: )))
(defun prompt-and-upcase (prompt-str)
(upcase (read-string prompt-str)))
(setq org-capture-templates
'((a Admit entry
(file ~/Shelter/ShelterAdmissions.org)
* admit %(prompt-for-lastname-and-upcase), %^{firstname} %U
:PROPERTIES:
%^{IDnumber}p
%^{Birthdate}p
%^{Age}p
%^{Sex}p
%^{Address1}p
%^{Address2}p
%^{City}p
%^{State}p
%^{Zipcode}p
%^{Doctor1}p
%^{Doctor2}p
%^{Pharmacy1}p
%^{Pharmacy2}p
:empty-lines: 1)
)
)
;; Insert immediate timestamp
(setq org-agenda-skip-additional-timestamps nil)
(define-key global-map (kbd f8)
'(lambda () (interactive)
(when (eq major-mode 'org-mode)
(org-insert-time-stamp nil t t)
(insert \n
;;; This was installed by package-install.el.
;;; This provides support for the package system and
;;; interfacing with ELPA, the package archive.
;;; Move this code earlier if you want to reference
;;; packages in your .emacs.
(when
(load
(expand-file-name ~/.emacs.d/elpa/package.el))
(package-initialize))
(custom-set-variables
;; custom-set-variables was added by Custom.
;; If you edit it by hand, you could mess it up, so be careful.
;; Your init file should contain only one such instance.
;; If there is more than one, they won't work right.
'(load-home-init-file t t)
'(org-agenda-files (quote (c:/DATA/MedicalShelterAdmissions.org
c:/DATA/SCHOLAR/HeatWaves/HeatWaves1.org)))
'(org-inlinetask-export nil)
'(sentence-end-double-space nil)
'(show-paren-mode t)
'(text-mode-hook (quote (text-mode-hook-identify)))
'(transient-mark-mode t))
(custom-set-faces
;; custom-set-faces was added by Custom.
;; If you edit it by hand, you could mess it up, so be careful.
;; Your init file should contain only one such instance.
;; If there is more than one, they won't work right.
)
; bunch of cosmetic stuff in here: font, background color, etc
;; make ESS use the correct version of R
;; (setq inferior-R-program-name c:/progra~1/R/R-2.14.1/bin/Rterm.exe)
;; active Babel languages
(org-babel-do-load-languages
'org-babel-load-languages
'((R . t)
(python . t)
(perl . t)
))
;; turn off auto-fill-mode
(auto-fill-mode 0)
(global-visual-line-mode -1)
(cd C:/DATA/)
;; activate RefTex mode with org-mode
;; insert a citation with C-c )
(defun org-mode-reftex-setup ()
(load-library reftex)
(and (buffer-file-name)
(file-exists-p (buffer-file-name))
(reftex-parse-all))
(define-key org-mode-map (kbd C-c )) 'reftex-citation))
(add-hook 'org-mode-hook 'org-mode-reftex-setup)
;; in org-mode, by default, long lines disappear into the right window
edge. If you prefer them wrapped, you can add this to your init file:
(add-hook 'org-mode-hook 'soft-wrap-lines)
(defun soft-wrap-lines ()
Make lines wrap at window edge and on word boundary,
in current buffer.
(interactive)
(setq truncate-lines nil)
(setq word-wrap t)
)
;;
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
Achim Gratz strom...@nexgo.de writes: Bastien writes: 8dd2bfc291 release_8.0-alpha (move the new exporter into core) ee3b3eb421 release_8.0-beta (remove /contrib/oldexp/) Okay, please go ahead. Done. Thanks! -- Bastien
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
Bastien writes: Bastien, I think it would make sense to clear up this confusion by tagging 8dd2bfc291 with version 7.9.9 or 8.0-pre or something like that (must be an annotated tag, of course). That'll help to easier determine who's using the new and the old exporter. I used 8.0-pre -- thanks for the suggestion! Thanks, but you tagged a different commit. The commit I named is the one that moved the new exporter into core which I consider an important milestone. I suggest to add two extra annotated tags to account correctly (in the way version-to-list numbers things) for the history leading up to the 8.0 release: 8dd2bfc291 release_8.0-alpha (move the new exporter into core) ee3b3eb421 release_8.0-beta (remove /contrib/oldexp/) Regards, Achim. -- +[Q+ Matrix-12 WAVE#46+305 Neuron microQkb Andromeda XTk Blofeld]+ Samples for the Waldorf Blofeld: http://Synth.Stromeko.net/Downloads.html#BlofeldSamplesExtra
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
Hi Achim, Achim Gratz strom...@nexgo.de writes: Thanks, but you tagged a different commit. The commit I named is the one that moved the new exporter into core which I consider an important milestone. I suggest to add two extra annotated tags to account correctly (in the way version-to-list numbers things) for the history leading up to the 8.0 release: 8dd2bfc291 release_8.0-alpha (move the new exporter into core) ee3b3eb421 release_8.0-beta (remove /contrib/oldexp/) Okay, please go ahead. Thanks, -- Bastien
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
Bastien writes: 8dd2bfc291 release_8.0-alpha (move the new exporter into core) ee3b3eb421 release_8.0-beta (remove /contrib/oldexp/) Okay, please go ahead. Done. Regards, Achim. -- +[Q+ Matrix-12 WAVE#46+305 Neuron microQkb Andromeda XTk Blofeld]+ SD adaptations for KORG EX-800 and Poly-800MkII V0.9: http://Synth.Stromeko.net/Downloads.html#KorgSDada
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
Achim Gratz strom...@nexgo.de writes: Bastien, I think it would make sense to clear up this confusion by tagging 8dd2bfc291 with version 7.9.9 or 8.0-pre or something like that (must be an annotated tag, of course). That'll help to easier determine who's using the new and the old exporter. I used 8.0-pre -- thanks for the suggestion! -- Bastien
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
Christopher W. Ryan cr...@binghamton.edu writes: Well, with the little test file I initially posted, things worked OK with org version 7.9.3f. But things are bit more complicated: [...] Put cursor on * Hello above and then C-c C-e 1 d Are you sure you are using the new exporter? This binding doesn't work for me but did work for the old exporter. The equivalent in the new exporter would be C-c C-e C-s l o, I believe. Your configuration must be mixing up old and new exporters and, believe me, you're not the only one in this situation. -- : Eric S Fraga, GnuPG: 0xC89193D8FFFCF67D : in Emacs 24.3.50.1 and Org release_7.9.3f-1199-g3a0e55
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
I have to admit I'm not yet experienced enough with org mode to know about the new exporter versus the old. I've been trying to ignore the conversations on the list about the new exporter, since, at least until now, whatever org mode was doing was what I needed it to do. I have org mode 7.9.3f. Does that mean I am using any particular exporter? How do I tell which exporter I am using with C-c C-e d ? I will try C-c C-e C-s l o with my little test file next time I am on the Windows system where I am having the problem. Thanks. --Chris On Thu, Mar 7, 2013 at 3:42 AM, Eric S Fraga e.fr...@ucl.ac.uk wrote: Christopher W. Ryan cr...@binghamton.edu writes: Well, with the little test file I initially posted, things worked OK with org version 7.9.3f. But things are bit more complicated: [...] Put cursor on * Hello above and then C-c C-e 1 d Are you sure you are using the new exporter? This binding doesn't work for me but did work for the old exporter. The equivalent in the new exporter would be C-c C-e C-s l o, I believe. Your configuration must be mixing up old and new exporters and, believe me, you're not the only one in this situation. -- : Eric S Fraga, GnuPG: 0xC89193D8FFFCF67D : in Emacs 24.3.50.1 and Org release_7.9.3f-1199-g3a0e55
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
Christopher W Ryan cr...@binghamton.edu writes: I have to admit I'm not yet experienced enough with org mode to know about the new exporter versus the old. I've been trying to ignore the conversations on the list about the new exporter, since, at least until now, whatever org mode was doing was what I needed it to do. I have org mode 7.9.3f. Does that mean I am using any particular exporter? How do I tell which exporter I am using with C-c C-e d ? I believe that, if you are using 7.9.3f, you should be using the new exporter. However, the key bindings you mentioned in the previous posting indicated that you were accessing the old exporter. This may mean that you have a confused configuration (easy to do at the moment due to the transition taking place between old and new exporters). One way to find out what you are using is to check what C-c C-e is bound to: C-h c C-c C-e. If this says org-export-dispatch, it is the new one. The old one, I believe, was bound to org-export alone. The former gives a two level selection mechanism (e.g. you choose l for LaTeX first and then another letter for actual target for the export, e.g. tex vs pdf). The latter uses only one letter to accomplish both selections. I hope this makes sense. -- : Eric S Fraga, GnuPG: 0xC89193D8FFFCF67D : in Emacs 24.3.50.1 and Org release_7.9.3f-1199-g3a0e55
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
Thanks John. I will post the babel-related part of my .emacs when I am back at the office, on the computer in question. Could you try exporting just the * Hello subtree with C-c C-e 1 p ? That's where I am experiencing the trouble, rather than with exporting the whole document with C-c C-e p. --Chris On Thu, Mar 7, 2013 at 10:00 AM, John Hendy jw.he...@gmail.com wrote: On Thu, Mar 7, 2013 at 7:13 AM, Christopher W Ryan cr...@binghamton.edu wrote: I have to admit I'm not yet experienced enough with org mode to know about the new exporter versus the old. I've been trying to ignore the conversations on the list about the new exporter, since, at least until now, whatever org mode was doing was what I needed it to do. I have org mode 7.9.3f. Does that mean I am using any particular exporter? How do I tell which exporter I am using with C-c C-e d ? I will try C-c C-e C-s l o with my little test file next time I am on the Windows system where I am having the problem. Cursor on * Hello, C-c C-e p and I get the attached (seems to work). Have not removed ** Big foo. I'm using the old exporter. Can you post your babel-related .emacs section? John Thanks. --Chris On Thu, Mar 7, 2013 at 3:42 AM, Eric S Fraga e.fr...@ucl.ac.uk wrote: Christopher W. Ryan cr...@binghamton.edu writes: Well, with the little test file I initially posted, things worked OK with org version 7.9.3f. But things are bit more complicated: [...] Put cursor on * Hello above and then C-c C-e 1 d Are you sure you are using the new exporter? This binding doesn't work for me but did work for the old exporter. The equivalent in the new exporter would be C-c C-e C-s l o, I believe. Your configuration must be mixing up old and new exporters and, believe me, you're not the only one in this situation. -- : Eric S Fraga, GnuPG: 0xC89193D8FFFCF67D : in Emacs 24.3.50.1 and Org release_7.9.3f-1199-g3a0e55
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
On Thu, Mar 7, 2013 at 9:54 AM, Christopher W Ryan cr...@binghamton.edu wrote: Thanks John. I will post the babel-related part of my .emacs when I am back at the office, on the computer in question. Could you try exporting just the * Hello subtree with C-c C-e 1 p ? That's where I am experiencing the trouble, rather than with exporting the whole document with C-c C-e p. Yikes, and duh. I completely forgot the whole point. I do *not* get the right behavior! Odd, as I thought I had been with your original post. I'm on 7.9.3e. C-c C-e is bound to =org-export= for me (old exporter). John --Chris On Thu, Mar 7, 2013 at 10:00 AM, John Hendy jw.he...@gmail.com wrote: On Thu, Mar 7, 2013 at 7:13 AM, Christopher W Ryan cr...@binghamton.edu wrote: I have to admit I'm not yet experienced enough with org mode to know about the new exporter versus the old. I've been trying to ignore the conversations on the list about the new exporter, since, at least until now, whatever org mode was doing was what I needed it to do. I have org mode 7.9.3f. Does that mean I am using any particular exporter? How do I tell which exporter I am using with C-c C-e d ? I will try C-c C-e C-s l o with my little test file next time I am on the Windows system where I am having the problem. Cursor on * Hello, C-c C-e p and I get the attached (seems to work). Have not removed ** Big foo. I'm using the old exporter. Can you post your babel-related .emacs section? John Thanks. --Chris On Thu, Mar 7, 2013 at 3:42 AM, Eric S Fraga e.fr...@ucl.ac.uk wrote: Christopher W. Ryan cr...@binghamton.edu writes: Well, with the little test file I initially posted, things worked OK with org version 7.9.3f. But things are bit more complicated: [...] Put cursor on * Hello above and then C-c C-e 1 d Are you sure you are using the new exporter? This binding doesn't work for me but did work for the old exporter. The equivalent in the new exporter would be C-c C-e C-s l o, I believe. Your configuration must be mixing up old and new exporters and, believe me, you're not the only one in this situation. -- : Eric S Fraga, GnuPG: 0xC89193D8FFFCF67D : in Emacs 24.3.50.1 and Org release_7.9.3f-1199-g3a0e55
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
Eric S Fraga writes: I believe that, if you are using 7.9.3f, you should be using the new exporter. The question to answer is whether he's using the maint or the master branch. I'd think the Op is using the 7.9.3f release, i.e. maint. Bastien, I think it would make sense to clear up this confusion by tagging 8dd2bfc291 with version 7.9.9 or 8.0-pre or something like that (must be an annotated tag, of course). That'll help to easier determine who's using the new and the old exporter. Regards, Achim. -- +[Q+ Matrix-12 WAVE#46+305 Neuron microQkb Andromeda XTk Blofeld]+ Factory and User Sound Singles for Waldorf Blofeld: http://Synth.Stromeko.net/Downloads.html#WaldorfSounds
Re: [O] trouble exporting just one subtree while using babel and R code blocks
Thanks John. I was a little nervous about upgrading org version. I use Vince Goulet's version of emacs with ESS built-in, and he removed org-mode from his latest release (24.2.1) http://vgoulet.act.ulaval.ca/pub/emacs/NEWS-windows But I downloaded and installed the newer emacs anyway, and got org-mode version 7.9.3f from the org website, and that solved my problem. So far, so good . . . . --Chris Christopher W. Ryan, MD, MS SUNY Upstate Medical University Clinical Campus at Binghamton 425 Robinson Street, Binghamton, NY 13904 cryanatbinghamtondotedu Once we recognize that we do not err out of laziness, stupidity, or evil intent, we can liberate ourselves from the impossible burden of trying to be permanently right. We can take seriously the proposition that we could be in error, without deeming ourselves idiotic or unworthy. [Karen Schulz, in Being Wrong: Adventures in the Margin of Error] John Hendy wrote: On Mon, Feb 18, 2013 at 3:10 PM, Christopher W. Ryan cr...@binghamton.edu wrote: I have a long cumulative org file that contains work related to a series of studies. Each first-level subtree (*) is a new study. I need to be able to export any given first-level tree on its own, with an output pdf file name different from the main org filename, and with a title perhaps different from the * headline. And I need to execute R code as it exports. I am running org-mode 7.7 on Windows XP A sample org file to illustrate the problem looks like this: -- * goodbye foo foo * Hello :PROPERTIES: :EXPORT_FILE_NAME: TestMyBabelSetup :EXPORT_TITLE: foobar :EXPORT_AUTHOR: Christopher W. Ryan, MD MS :RESULTS: output :EXPORTS: both :END: foo #+begin_src R rnorm(3) #+end_src When I export the whole file to pdf, everything works fine. But if I try to export just the * Hello tree, then I get an error: Args out of range: , -1, 0 I can't reproduce. =M-x org-version= is Org-mode version 7.9.3e (7.9.3e-910-g33c4f6) Can you try updating your orgmode version? I attached the results of =C-c C-e 1 p= (export subtree) with the cursor within the * Hello headline contents. Best regards, John If I remove anything relating to R and babel from the * Hello tree, leaving just this: --- * goodbye foo foo * Hello :PROPERTIES: :EXPORT_FILE_NAME: TestMyBabelSetup :EXPORT_TITLE: foobar :EXPORT_AUTHOR: Christopher W. Ryan, MD MS :END: foo - then exporting just the * Hello treee works as expected. I'm stumped. What am I doing wrong? Thanks. --Chris -- Christopher W. Ryan, MD, MS SUNY Upstate Medical University Clinical Campus at Binghamton 425 Robinson Street, Binghamton, NY 13904 cryanatbinghamtondotedu
Re: [O] trouble exporting just one subtree while using babel and R code blocks--spoke too soon
Well, with the little test file I initially posted, things worked OK with org version 7.9.3f. But things are bit more complicated: --- * goodbye foo foo * Hello :PROPERTIES: :EXPORT_FILE_NAME: TestMyBabelSetup :EXPORT_TITLE: foobar :EXPORT_AUTHOR: Christopher W. Ryan, MD MS :RESULTS: output :EXPORTS: both :END: ** Big foo foo #+begin_src R rnorm(3) #+end_src --- Put cursor on * Hello above and then C-c C-e 1 d The resulting pdf file does not show the results of the R code, only the verbatim code itself. Remove the line ** Big foo Then put cursor on * Hello above and then C-c C-e 1 d org/babel then asks if I want to execute the R code. Answer yes. A pdf file will open showing the R code and the results. I don't understand. --Chris Christopher W. Ryan, MD, MS SUNY Upstate Medical University Clinical Campus at Binghamton 425 Robinson Street, Binghamton, NY 13904 cryanatbinghamtondotedu Once we recognize that we do not err out of laziness, stupidity, or evil intent, we can liberate ourselves from the impossible burden of trying to be permanently right. We can take seriously the proposition that we could be in error, without deeming ourselves idiotic or unworthy. [Karen Schulz, in Being Wrong: Adventures in the Margin of Error] John Hendy wrote: On Mon, Feb 18, 2013 at 3:10 PM, Christopher W. Ryan cr...@binghamton.edu wrote: I have a long cumulative org file that contains work related to a series of studies. Each first-level subtree (*) is a new study. I need to be able to export any given first-level tree on its own, with an output pdf file name different from the main org filename, and with a title perhaps different from the * headline. And I need to execute R code as it exports. I am running org-mode 7.7 on Windows XP A sample org file to illustrate the problem looks like this: -- * goodbye foo foo * Hello :PROPERTIES: :EXPORT_FILE_NAME: TestMyBabelSetup :EXPORT_TITLE: foobar :EXPORT_AUTHOR: Christopher W. Ryan, MD MS :RESULTS: output :EXPORTS: both :END: foo #+begin_src R rnorm(3) #+end_src When I export the whole file to pdf, everything works fine. But if I try to export just the * Hello tree, then I get an error: Args out of range: , -1, 0 I can't reproduce. =M-x org-version= is Org-mode version 7.9.3e (7.9.3e-910-g33c4f6) Can you try updating your orgmode version? I attached the results of =C-c C-e 1 p= (export subtree) with the cursor within the * Hello headline contents. Best regards, John If I remove anything relating to R and babel from the * Hello tree, leaving just this: --- * goodbye foo foo * Hello :PROPERTIES: :EXPORT_FILE_NAME: TestMyBabelSetup :EXPORT_TITLE: foobar :EXPORT_AUTHOR: Christopher W. Ryan, MD MS :END: foo - then exporting just the * Hello treee works as expected. I'm stumped. What am I doing wrong? Thanks. --Chris -- Christopher W. Ryan, MD, MS SUNY Upstate Medical University Clinical Campus at Binghamton 425 Robinson Street, Binghamton, NY 13904 cryanatbinghamtondotedu Once we recognize that we do not err out of laziness, stupidity, or evil intent, we can liberate ourselves from the impossible burden of trying to be permanently right. We can take seriously the proposition that we could be in error, without deeming ourselves idiotic or unworthy. [Karen Schulz, in Being Wrong: Adventures in the Margin of Error]
Re: [O] trouble exporting just one subtree while using babel and R code blocks
On Wed, Mar 6, 2013 at 1:33 PM, Christopher W. Ryan cr...@binghamton.edu wrote: Thanks John. I was a little nervous about upgrading org version. I use Vince Goulet's version of emacs with ESS built-in, and he removed org-mode from his latest release (24.2.1) http://vgoulet.act.ulaval.ca/pub/emacs/NEWS-windows But I downloaded and installed the newer emacs anyway, and got org-mode version 7.9.3f from the org website, and that solved my problem. So far, so good . . . . Yay! Glad things worked for you. John --Chris Christopher W. Ryan, MD, MS SUNY Upstate Medical University Clinical Campus at Binghamton 425 Robinson Street, Binghamton, NY 13904 cryanatbinghamtondotedu Once we recognize that we do not err out of laziness, stupidity, or evil intent, we can liberate ourselves from the impossible burden of trying to be permanently right. We can take seriously the proposition that we could be in error, without deeming ourselves idiotic or unworthy. [Karen Schulz, in Being Wrong: Adventures in the Margin of Error] John Hendy wrote: On Mon, Feb 18, 2013 at 3:10 PM, Christopher W. Ryan cr...@binghamton.edu wrote: I have a long cumulative org file that contains work related to a series of studies. Each first-level subtree (*) is a new study. I need to be able to export any given first-level tree on its own, with an output pdf file name different from the main org filename, and with a title perhaps different from the * headline. And I need to execute R code as it exports. I am running org-mode 7.7 on Windows XP A sample org file to illustrate the problem looks like this: -- * goodbye foo foo * Hello :PROPERTIES: :EXPORT_FILE_NAME: TestMyBabelSetup :EXPORT_TITLE: foobar :EXPORT_AUTHOR: Christopher W. Ryan, MD MS :RESULTS: output :EXPORTS: both :END: foo #+begin_src R rnorm(3) #+end_src When I export the whole file to pdf, everything works fine. But if I try to export just the * Hello tree, then I get an error: Args out of range: , -1, 0 I can't reproduce. =M-x org-version= is Org-mode version 7.9.3e (7.9.3e-910-g33c4f6) Can you try updating your orgmode version? I attached the results of =C-c C-e 1 p= (export subtree) with the cursor within the * Hello headline contents. Best regards, John If I remove anything relating to R and babel from the * Hello tree, leaving just this: --- * goodbye foo foo * Hello :PROPERTIES: :EXPORT_FILE_NAME: TestMyBabelSetup :EXPORT_TITLE: foobar :EXPORT_AUTHOR: Christopher W. Ryan, MD MS :END: foo - then exporting just the * Hello treee works as expected. I'm stumped. What am I doing wrong? Thanks. --Chris -- Christopher W. Ryan, MD, MS SUNY Upstate Medical University Clinical Campus at Binghamton 425 Robinson Street, Binghamton, NY 13904 cryanatbinghamtondotedu
[O] trouble exporting just one subtree while using babel and R code blocks
I have a long cumulative org file that contains work related to a series of studies. Each first-level subtree (*) is a new study. I need to be able to export any given first-level tree on its own, with an output pdf file name different from the main org filename, and with a title perhaps different from the * headline. And I need to execute R code as it exports. I am running org-mode 7.7 on Windows XP A sample org file to illustrate the problem looks like this: -- * goodbye foo foo * Hello :PROPERTIES: :EXPORT_FILE_NAME: TestMyBabelSetup :EXPORT_TITLE: foobar :EXPORT_AUTHOR: Christopher W. Ryan, MD MS :RESULTS: output :EXPORTS: both :END: foo #+begin_src R rnorm(3) #+end_src When I export the whole file to pdf, everything works fine. But if I try to export just the * Hello tree, then I get an error: Args out of range: , -1, 0 If I remove anything relating to R and babel from the * Hello tree, leaving just this: --- * goodbye foo foo * Hello :PROPERTIES: :EXPORT_FILE_NAME: TestMyBabelSetup :EXPORT_TITLE: foobar :EXPORT_AUTHOR: Christopher W. Ryan, MD MS :END: foo - then exporting just the * Hello treee works as expected. I'm stumped. What am I doing wrong? Thanks. --Chris -- Christopher W. Ryan, MD, MS SUNY Upstate Medical University Clinical Campus at Binghamton 425 Robinson Street, Binghamton, NY 13904 cryanatbinghamtondotedu Once we recognize that we do not err out of laziness, stupidity, or evil intent, we can liberate ourselves from the impossible burden of trying to be permanently right. We can take seriously the proposition that we could be in error, without deeming ourselves idiotic or unworthy. [Karen Schulz, in Being Wrong: Adventures in the Margin of Error]
