[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Suvayu Ali fatkasuvayu+li...@gmail.com writes: Hi Eric, On Tue, 01 Mar 2011 20:41:20 + Eric S Fraga e.fr...@ucl.ac.uk wrote: Ah, very interesting. What I don't understand is why this is affecting you. I can see it affecting you if the aux file cannot be found but not if the first pdflatex step worked okay. Do you still have the problem if the first step worked? Before the first pdflatex run the working directory seems correct: Invoked in dir /home/jallad/org/masters-thesis In the output for this run I see some lines like these: [6] No file msthesis.bbl. [7] (./msthesis.aux) I guess that means the .aux files are created? Well, actually, this indicates that the aux file is being read by pdflatex. But obviously it must exist therefore... If so, and if you still have the sh file I sent to the list yesterday, can you add the following line to the top: echo 'Invoked in dir ' $PWD and post the output (the first few lines only) of the export to PDF when you get the error with bibtex? Despite the above, for bibtex I get the following: - running bibtex next Invoked in dir /home/jallad/org/masters-thesis bibtex: Not writing to /home/jallad/org/masters-thesis/msthesis.blg (openout_any = p). I couldn't open file name `/home/jallad/org/masters-thesis/msthesis.blg' Oh well, there goes that theory. The web link you gave yesterday would seem to indicate that the problem is present if you invoke the bibtex command from another directory and this does not appear to be the case here. Very strange. Explicitly calling the texlive 2007 bibtex resolves the problem. Well, at least you can get this working for now but obviously there is a problem we are going to have to sort out as more users move to 2010. I am using texlive 2009 on Debian and that version doesn't have this problem. Texlive 2010 isn't available (yet) for Debian even in unstable so I cannot easily test this out unfortunately. I'll have a look to see if it's in Debian's experimental distribution when I get a chance. -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1 : using Org-mode version 7.4 (release_7.4.576.g99675) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Suvayu Ali fatkasuvayu+li...@gmail.com writes: On Mon, 28 Feb 2011 12:45:36 -0800 Suvayu Ali fatkasuvayu+li...@gmail.com wrote: Thank you for this nice idea. I tried it, but every time I (without the -interaction nonstopmode option) the pdflatex process stops at this: Strangely, with -interaction nonstopmode using the shell script trick gives me perfect results! I guess I can keep using this until the real issue is resolved. Well, not so strange: if the error (iint redefined) is not one that actually affects your latex code, then telling latex to not stop on errors allows it to create your pdf file. more importantly, it is able to generate the information that bibtex subsequently needs to generate the bibliography. Anyway, I'm glad I could help! See my other email on how to solve the original problem. -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1 : using Org-mode version 7.4 (release_7.4.555.gfcf66) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Thomas S. Dye t...@tsdye.com writes: Aloha Suvayu, I haven't looked into this in depth, but I think your problem might come from loading amssymb and amsmath. LaTeX is complaining that something is already defined; the AMS packages are a prime suspect here. Perhaps you could inhibit amssymb? All the best, Tom Suvayu, I think this is indeed the problem. I had this problem a month or so ago (search the mailing list!). My solution is to add this to my .emacs: --8---cut here---start-8--- ;; to fix problems with amsmath conflicting with wasysym: ;; ;; From: Lawrence Mitchell we...@gmx.li ;; Subject: [Orgmode] Re: [bug] latex export ignores org-export-latex-default-packages-alist? ;; To: emacs-orgmode@gnu.org ;; Date: Wed, 26 Jan 2011 16:01:52 + (add-to-list 'org-export-latex-packages-alist '( amsmath t)) (setcar (rassoc '(wasysym t) org-export-latex-default-packages-alist) integrals) --8---cut here---end---8--- -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1 : using Org-mode version 7.4 (release_7.4.555.gfcf66) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Hi Tom and Eric, On Tue, 01 Mar 2011 08:52:44 + Eric S Fraga e.fr...@ucl.ac.uk wrote: Thomas S. Dye t...@tsdye.com writes: Aloha Suvayu, I haven't looked into this in depth, but I think your problem might come from loading amssymb and amsmath. LaTeX is complaining that something is already defined; the AMS packages are a prime suspect here. Perhaps you could inhibit amssymb? All the best, Tom Suvayu, I think this is indeed the problem. I had this problem a month or so ago (search the mailing list!). My solution is to add this to my .emacs: --8---cut here---start-8--- (add-to-list 'org-export-latex-packages-alist '( amsmath t)) (setcar (rassoc '(wasysym t) org-export-latex-default-packages-alist) integrals) --8---cut here---end---8--- Thanks a lot, that worked like a charm. :) Although I get perfect results using the Fedora 13 provided texlive (2007), I noticed I get that old error again (quoted below) when I use the texlive 2010 install from CTAN. Maybe some problem in my setup. I will use my distribution provided texlive for now. Thanks again for being so patient and helping with my issues. :) bibtex: Not writing to /home/jallad/org/masters-thesis/msthesis.blg (openout_any = p). I couldn't open file name `/home/jallad/org/masters-thesis/msthesis.blg' -- Suvayu Open source is the future. It sets us free. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Hi Eric, Thomas, is there a problem in the default setup of LaTeX export that needs to be addressed? - Carsten On Mar 1, 2011, at 9:52 AM, Eric S Fraga wrote: Thomas S. Dye t...@tsdye.com writes: Aloha Suvayu, I haven't looked into this in depth, but I think your problem might come from loading amssymb and amsmath. LaTeX is complaining that something is already defined; the AMS packages are a prime suspect here. Perhaps you could inhibit amssymb? All the best, Tom Suvayu, I think this is indeed the problem. I had this problem a month or so ago (search the mailing list!). My solution is to add this to my .emacs: --8---cut here---start-8--- ;; to fix problems with amsmath conflicting with wasysym: ;; ;; From: Lawrence Mitchell we...@gmx.li ;; Subject: [Orgmode] Re: [bug] latex export ignores org-export-latex-default-packages-alist? ;; To: emacs-orgmode@gnu.org ;; Date: Wed, 26 Jan 2011 16:01:52 + (add-to-list 'org-export-latex-packages-alist '( amsmath t)) (setcar (rassoc '(wasysym t) org-export-latex-default-packages-alist) integrals) --8---cut here---end---8--- -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1 : using Org-mode version 7.4 (release_7.4.555.gfcf66) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode - Carsten ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Suvayu Ali fatkasuvayu+li...@gmail.com writes: [...] Although I get perfect results using the Fedora 13 provided texlive (2007), I noticed I get that old error again (quoted below) when I use the texlive 2010 install from CTAN. Maybe some problem in my setup. I will use my distribution provided texlive for now. Thanks again for being so patient and helping with my issues. :) bibtex: Not writing to /home/jallad/org/masters-thesis/msthesis.blg (openout_any = p). I couldn't open file name `/home/jallad/org/masters-thesis/msthesis.blg' Sorry; this I cannot help with much as I'm not sure what is happening here and I've never run into this before. Are there any problems with that file (e.g. read only mode)? Is the file there? If so, what happens if you remove it? It should be created automatically by bibtex. Have you tried searching the web with that error message (e.g. google bibtex openout_any)? -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1 : using Org-mode version 7.4 (release_7.4.562.gc895) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Carsten Dominik carsten.domi...@gmail.com writes: Hi Eric, Thomas, is there a problem in the default setup of LaTeX export that needs to be addressed? - Carsten Not as such in the default. The issue arises when one wants to extend the defaults to include the amsmath package. This conflicts with the wasysym package included by default by org. Both packages define the =\iint= symbol and latex doesn't allow for such clashes nicely. The suggested fix is to use this magic (to me) code suggested by Lawrence Mitchell earlier this year: --8---cut here---start-8--- ;; to fix problems with amsmath conflicting with wasysym: ;; ;; From: Lawrence Mitchell we...@gmx.li ;; Subject: [Orgmode] Re: [bug] latex export ignores org-export-latex-default-packages-alist? ;; To: emacs-orgmode@gnu.org ;; Date: Wed, 26 Jan 2011 16:01:52 + (add-to-list 'org-export-latex-packages-alist '( amsmath t)) (setcar (rassoc '(wasysym t) org-export-latex-default-packages-alist) integrals) --8---cut here---end---8--- modifying, I guess, what is actually loaded from wasysym. I've not delved more into this but Lawrence may be able to help here? Thanks, eric -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1 : using Org-mode version 7.4 (release_7.4.562.gc895) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Aloha Carsten,
Does Org-mode use the wasysym package for its integral symbols? If
not, potential clashes with the amsmath package could be avoided by
loading it with the nointegrals option: \loadpackage[nointegrals]
{wasysym}. This is a fairly standard way to load wasysym (which I
should have recalled for Suvayu's recent problem, thanks Eric for
remembering).
All the best,
Tom
Hi Eric, Thomas,
is there a problem in the default setup of LaTeX export that needs
to be
addressed?
- Carsten
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[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Hi Eric and others, On Tue, 01 Mar 2011 12:51:22 + Eric S Fraga e.fr...@ucl.ac.uk wrote: Suvayu Ali fatkasuvayu+li...@gmail.com writes: [...] Although I get perfect results using the Fedora 13 provided texlive (2007), I noticed I get that old error again (quoted below) when I use the texlive 2010 install from CTAN. Maybe some problem in my setup. I will use my distribution provided texlive for now. Thanks again for being so patient and helping with my issues. :) bibtex: Not writing to /home/jallad/org/masters-thesis/msthesis.blg (openout_any = p). I couldn't open file name `/home/jallad/org/masters-thesis/msthesis.blg' Sorry; this I cannot help with much as I'm not sure what is happening here and I've never run into this before. Are there any problems with that file (e.g. read only mode)? Is the file there? If so, what happens if you remove it? It should be created automatically by bibtex. This happens with a clean working directory. Have you tried searching the web with that error message (e.g. google bibtex openout_any)? I found a recent (Jan 2010) discussion about this. There was a change in behaviour for bibtex in the latest texlive build which leads to this behaviour. You can follow the discussion in this thread[1]. The TeX developers expect external tools like org and other editor plugins to adapt to this change. I think this is why I was having problems in the first place, not sure how this can be resolved though. If we find a solution it would be worth a mention on Worg. [1] http://web.archiveorange.com/archive/v/VBuN9l7WNXs4SXOn6Kxh -- Suvayu Open source is the future. It sets us free. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Thomas S. Dye t...@tsdye.com wrote:
Does Org-mode use the wasysym package for its integral symbols? If
not, potential clashes with the amsmath package could be avoided by
loading it with the nointegrals option: \loadpackage
[nointegrals]{wasysym}. This is a fairly standard way to load wasysym
(which I should have recalled for Suvayu's recent problem, thanks Eric
for remembering).
That's very nice - thanks! I believe wasysym was introduced for its misc
symbols, not the integrals - if one needs integrals, then presumably
amsmath is the way to go, so [nointegrals] looks indeed like the right
way to go.
Nick
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[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Suvayu Ali fatkasuvayu+li...@gmail.com writes: [...] Have you tried searching the web with that error message (e.g. google bibtex openout_any)? I found a recent (Jan 2010) discussion about this. There was a change in behaviour for bibtex in the latest texlive build which leads to this behaviour. You can follow the discussion in this thread[1]. The TeX developers expect external tools like org and other editor plugins to adapt to this change. I think this is why I was having problems in the first place, not sure how this can be resolved though. If we find a solution it would be worth a mention on Worg. [1] http://web.archiveorange.com/archive/v/VBuN9l7WNXs4SXOn6Kxh Ah, very interesting. What I don't understand is why this is affecting you. I can see it affecting you if the aux file cannot be found but not if the first pdflatex step worked okay. Do you still have the problem if the first step worked? If so, and if you still have the sh file I sent to the list yesterday, can you add the following line to the top: echo 'Invoked in dir ' $PWD and post the output (the first few lines only) of the export to PDF when you get the error with bibtex? -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1 : using Org-mode version 7.4 (release_7.4.576.g99675.dirty) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Hi Eric, On Tue, 01 Mar 2011 20:41:20 + Eric S Fraga e.fr...@ucl.ac.uk wrote: Ah, very interesting. What I don't understand is why this is affecting you. I can see it affecting you if the aux file cannot be found but not if the first pdflatex step worked okay. Do you still have the problem if the first step worked? Before the first pdflatex run the working directory seems correct: Invoked in dir /home/jallad/org/masters-thesis In the output for this run I see some lines like these: [6] No file msthesis.bbl. [7] (./msthesis.aux) I guess that means the .aux files are created? If so, and if you still have the sh file I sent to the list yesterday, can you add the following line to the top: echo 'Invoked in dir ' $PWD and post the output (the first few lines only) of the export to PDF when you get the error with bibtex? Despite the above, for bibtex I get the following: - running bibtex next Invoked in dir /home/jallad/org/masters-thesis bibtex: Not writing to /home/jallad/org/masters-thesis/msthesis.blg (openout_any = p). I couldn't open file name `/home/jallad/org/masters-thesis/msthesis.blg' Explicitly calling the texlive 2007 bibtex resolves the problem. As per one of Tom's suggestions earlier in the thread, if I set (setq org-export-pdf-remove-logfiles nil) I can see the .aux files present after the final pdflatex run. Not sure why bibtex overlooks that since the working directory seems correct. -- Suvayu Open source is the future. It sets us free. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Suvayu Ali fatkasuvayu+li...@gmail.com writes: Hi Eric, On Sat, 26 Feb 2011 00:23:15 + Eric S Fraga e.fr...@ucl.ac.uk wrote: suvayu ali fatkasuvayu+li...@gmail.com writes: Hi everyone, I am trying to use bibtex with pdf export for my thesis. So I tried customising =org-latex-to-pdf-process= so that bibtex is run before pdflatex. So from the customise buffer I set it to something like this: I have #+begin_src emacs-lisp (setq org-latex-to-pdf-process '(pdflatex %f bibtex %b pdflatex %f pdflatex %f)) #+end_src I tried that, no luck. It gets stuck at some line and fails. I think there is some problem with one of the packages I am using for equations. Putting back -interactionmode nonstop makes the pdflatex process continue to the end and produce the pdf. I think you should try to sort this out first. What happens if you export to latex and then invoke pdflatex directly yourself? Which package is causing the error? In any case, once you have the latex, you can try the individual steps directly. I would recommend using auctex mode within Emacs. You should be able to mimic the behaviour of org's pdf export by repeated use of C-c C-c in auctex mode. -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1 : using Org-mode version 7.4 (release_7.4.529.gb23d.dirty) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Suvayu Ali fatkasuvayu+li...@gmail.com writes: [...] Does that say anything to you? How do I capture the output from bibtex? I presumed it is being overwritten by subsequent pdflatex runs. So I removed the later pdflatex runs from the variable and that gives me this output in the *Org PDF LaTeX Output* buffer. [...] You could try creating a shell script (such as attached) which invokes both pdflatex and bibtex and tell org to use that command for exporting to pdf instead. Then all the output should come out to the screen. I've tried this and all the output (3 pdflatex and 1 bibtex invocations) comes out into the =*Org PDF Latex Output*= buffer. #!/bin/sh -f # first argument should be base latex file name F=$1 echo 'Using ' $F echo '- running pdflatex first' pdflatex $F echo '- running bibtex next' bibtex $F echo '- running pdflatex again (and again)' pdflatex $F pdflatex $F -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1 : using Org-mode version 7.4 (release_7.4.529.gb23d.dirty) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Hi Eric,
On Mon, 28 Feb 2011 16:06:06 +
Eric S Fraga e.fr...@ucl.ac.uk wrote:
You could try creating a shell script (such as attached) which invokes
both pdflatex and bibtex and tell org to use that command for
exporting to pdf instead. Then all the output should come out to the
screen.
I've tried this and all the output (3 pdflatex and 1 bibtex
invocations) comes out into the =*Org PDF Latex Output*= buffer.
Thank you for this nice idea. I tried it, but every time I (without the
-interaction nonstopmode option) the pdflatex process stops at this:
! LaTeX Error: Command \iint already defined.
Or name \end... illegal, see p.192 of the manual.
See the LaTeX manual or LaTeX Companion for explanation.
Type H return for immediate help.
...
l.506 ...d{\iint}{\DOTSI\protect\MultiIntegral{2}}
?
! Emergency stop.
...
l.506 ...d{\iint}{\DOTSI\protect\MultiIntegral{2}}
! == Fatal error occurred, no output PDF file produced!
Transcript written on msthesis.log.
The amsmath package is loaded before this.
In my preamble in the org file I have the following LaTeX options:
#+LaTeX_HEADER: \usepackage{cancel}
#+LaTeX_HEADER: \usepackage{amsmath}
#+LaTeX_HEADER: \usepackage{mathtools}
#+LaTeX_HEADER: \numberwithin{equation}{section}
#+LaTeX_CLASS_OPTIONS: [colorlinks]
# #+LaTeX_HEADER: \definecolor{myblue}{rgb}{0.235,0.263,0.867}
# #+LaTeX_HEADER: \definecolor{mygreen}{rgb}{0.012,0.467,0.059}
In the tex file this exports to:
% Created 2011-02-28 Mon 12:34
\documentclass[colorlinks]{article}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{fixltx2e}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{float}
\usepackage{wrapfig}
\usepackage{soul}
\usepackage{textcomp}
\usepackage{marvosym}
\usepackage{wasysym}
\usepackage{latexsym}
\usepackage{amssymb}
\usepackage{hyperref}
\tolerance=1000
\usepackage{cancel}
\usepackage{amsmath}
\usepackage{mathtools}
\numberwithin{equation}{section}
\providecommand{\alert}[1]{\textbf{#1}}
At first I thought its a problem with the mathtools package, but
removing it doesn't help either.
Is this a problem with my Latex installation? I tried both my
distribution provided texlive-2007 and texlive-2010 from the CTAN
archives with the same result. If its a problem with my texlive
installation, do you have any ideas where I can seek help? I'm rather
pressed for time.
Thanks a lot for being so patient. :)
--
Suvayu
Open source is the future. It sets us free.
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[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
On Mon, 28 Feb 2011 12:45:36 -0800 Suvayu Ali fatkasuvayu+li...@gmail.com wrote: Thank you for this nice idea. I tried it, but every time I (without the -interaction nonstopmode option) the pdflatex process stops at this: Strangely, with -interaction nonstopmode using the shell script trick gives me perfect results! I guess I can keep using this until the real issue is resolved. -- Suvayu Open source is the future. It sets us free. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[O] Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Aloha Suvayu,
I haven't looked into this in depth, but I think your problem might
come from loading amssymb and amsmath. LaTeX is complaining that
something is already defined; the AMS packages are a prime suspect
here. Perhaps you could inhibit amssymb?
All the best,
Tom
On Feb 28, 2011, at 10:45 AM, Suvayu Ali wrote:
Hi Eric,
On Mon, 28 Feb 2011 16:06:06 +
Eric S Fraga e.fr...@ucl.ac.uk wrote:
You could try creating a shell script (such as attached) which
invokes
both pdflatex and bibtex and tell org to use that command for
exporting to pdf instead. Then all the output should come out to the
screen.
I've tried this and all the output (3 pdflatex and 1 bibtex
invocations) comes out into the =*Org PDF Latex Output*= buffer.
Thank you for this nice idea. I tried it, but every time I (without
the
-interaction nonstopmode option) the pdflatex process stops at this:
! LaTeX Error: Command \iint already defined.
Or name \end... illegal, see p.192 of the manual.
See the LaTeX manual or LaTeX Companion for explanation.
Type H return for immediate help.
...
l.506 ...d{\iint}{\DOTSI\protect\MultiIntegral{2}}
?
! Emergency stop.
...
l.506 ...d{\iint}{\DOTSI\protect\MultiIntegral{2}}
! == Fatal error occurred, no output PDF file produced!
Transcript written on msthesis.log.
The amsmath package is loaded before this.
In my preamble in the org file I have the following LaTeX options:
#+LaTeX_HEADER: \usepackage{cancel}
#+LaTeX_HEADER: \usepackage{amsmath}
#+LaTeX_HEADER: \usepackage{mathtools}
#+LaTeX_HEADER: \numberwithin{equation}{section}
#+LaTeX_CLASS_OPTIONS: [colorlinks]
# #+LaTeX_HEADER: \definecolor{myblue}{rgb}{0.235,0.263,0.867}
# #+LaTeX_HEADER: \definecolor{mygreen}{rgb}{0.012,0.467,0.059}
In the tex file this exports to:
% Created 2011-02-28 Mon 12:34
\documentclass[colorlinks]{article}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{fixltx2e}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{float}
\usepackage{wrapfig}
\usepackage{soul}
\usepackage{textcomp}
\usepackage{marvosym}
\usepackage{wasysym}
\usepackage{latexsym}
\usepackage{amssymb}
\usepackage{hyperref}
\tolerance=1000
\usepackage{cancel}
\usepackage{amsmath}
\usepackage{mathtools}
\numberwithin{equation}{section}
\providecommand{\alert}[1]{\textbf{#1}}
At first I thought its a problem with the mathtools package, but
removing it doesn't help either.
Is this a problem with my Latex installation? I tried both my
distribution provided texlive-2007 and texlive-2010 from the CTAN
archives with the same result. If its a problem with my texlive
installation, do you have any ideas where I can seek help? I'm rather
pressed for time.
Thanks a lot for being so patient. :)
--
Suvayu
Open source is the future. It sets us free.
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[Orgmode] customising org-latex-to-pdf-process for bibtex
Hi everyone, I am trying to use bibtex with pdf export for my thesis. So I tried customising =org-latex-to-pdf-process= so that bibtex is run before pdflatex. So from the customise buffer I set it to something like this: pdflatex -interaction nonstopmode -output-directory %o %f bibtex %b pdflatex -interaction nonstopmode -output-directory %o %f pdflatex -interaction nonstopmode -output-directory %o %f I also tried these, pdflatex -interaction nonstopmode -output-directory %o %b bibtex %b pdflatex -interaction nonstopmode -output-directory %o %b pdflatex -interaction nonstopmode -output-directory %o %b But none of these run bibtex properly. For now I am exporting to latex everytime I change the bibliography and run bibtex from the terminal. For subsequent pdf exports the default values then give me a proper pdf with all the citations displayed correctly. Any thoughts on what I am doing wrong? -- Suvayu Open source is the future. It sets us free. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
suvayu ali fatkasuvayu+li...@gmail.com writes: Hi everyone, I am trying to use bibtex with pdf export for my thesis. So I tried customising =org-latex-to-pdf-process= so that bibtex is run before pdflatex. So from the customise buffer I set it to something like this: I have #+begin_src emacs-lisp (setq org-latex-to-pdf-process '(pdflatex %f bibtex %b pdflatex %f pdflatex %f)) #+end_src which seems to work just fine for me. You may wish (for security) to add the fully qualified paths for these executables, of course. -- : Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1 : using Org-mode version 7.4 (release_7.4.532.g7b21.dirty) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Hey Thomas, Thanks for your response. I have outlined what I tried and found below. On Fri, 25 Feb 2011 14:08:31 -1000 Thomas S. Dye t...@tsdye.com wrote: Aloha Suvayu, I had what sounds like a similar problem. You don't say why bibtex fails, but in my case it wasn't able to find the .aux file. When I do this: (setq org-export-pdf-remove-logfiles nil) then I'm able to run bibtex without problems. I tried that after your post, didn't seem to make a difference. I don't know how to find how bibtex fails. All I see are these lines in the *Org PDF LaTeX Output* buffer: No file msthesis.bbl. [5] (/home/jallad/org/masters-thesis//msthesis.aux) LaTeX Warning: There were undefined references. Does that say anything to you? How do I capture the output from bibtex? I presumed it is being overwritten by subsequent pdflatex runs. So I removed the later pdflatex runs from the variable and that gives me this output in the *Org PDF LaTeX Output* buffer. bibtex: Not writing to /home/user/org/masters-thesis/msthesis.blg (openout_any = p). I couldn't open file name `/home/user/org/masters-thesis/msthesis.blg' However with the same tex file, after I run bibtex msthesis from the terminal everything is fine! I even tried specifying the %b.aux in the org-latex-to-pdf-process variable with no luck. I haven't tested your org-latex-to-pdf-process setups, so can't say whether or not there is a problem with them. I use the TeXLive distributed by CTAN in isos. I setup my path so it finds the right binaries whenever I'm working with latex. I am sure my setup is fine as things are as expected when run from the teminal. -- Suvayu Open source is the future. It sets us free. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Hi Eric, On Sat, 26 Feb 2011 00:23:15 + Eric S Fraga e.fr...@ucl.ac.uk wrote: suvayu ali fatkasuvayu+li...@gmail.com writes: Hi everyone, I am trying to use bibtex with pdf export for my thesis. So I tried customising =org-latex-to-pdf-process= so that bibtex is run before pdflatex. So from the customise buffer I set it to something like this: I have #+begin_src emacs-lisp (setq org-latex-to-pdf-process '(pdflatex %f bibtex %b pdflatex %f pdflatex %f)) #+end_src I tried that, no luck. It gets stuck at some line and fails. I think there is some problem with one of the packages I am using for equations. Putting back -interactionmode nonstop makes the pdflatex process continue to the end and produce the pdf. which seems to work just fine for me. You may wish (for security) to add the fully qualified paths for these executables, of course. Its my private desktop and laptop, and I can be quite paranoid about security usually so that part is somewhat covered. :) Maybe I'll consider it later. If you are otherwise worried about whether I'm picking up the correct version of pdflatex, I see the following version information in the *Org PDF LaTeX output* buffer: This is pdfTeX, Version 3.1415926-1.40.11 (TeX Live 2010) So its as expected. Thank you for your thoughts about my issue, appreciate it. -- Suvayu Open source is the future. It sets us free. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] customising org-latex-to-pdf-process for bibtex
Hi Tom, On Fri, 25 Feb 2011 16:39:35 -1000 Thomas S. Dye t...@tsdye.com wrote: Aloha Suvayu, it sounds like you have a different problem than the one I experienced. Your error message seems to indicate the the .aux file is present, but that it points to a missing .bbl file. I am not very familiar with pdflatex/bibtex. I don't know when bibtex looks for that particular file. I noticed that the output you sent has different paths: /home/jallad/ vs. /home/user/ Not sure if that is an issue or not, but it might explain why the .aux file would point to an absent file. Sorry that was a typo on my part. They are the same. Is there anything else I could try to better understand what is going wrong? All the best, Tom Thanks a lot. -- Suvayu Open source is the future. It sets us free. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
