Re: [Orgmode] source code block export no expansion

2010-12-09 Thread Thomas S. Dye

Hi Andreas,

I've put a bug report on Eric and Dan's stack.  Thanks again for  
pointing this out.


All the best,
Tom

On Dec 7, 2010, at 8:55 PM, Andreas Leha wrote:


Hi Tom,

thanks a lot for looking into it!  Fixing this is unfortunately off  
my limits.


But for me the unnamed session is a valid work-around for me, since  
I do not need several sessions right now.  Thanks for this hint.


Cheers,
Andreas



Am 07.12.2010 21:14, schrieb Thomas S. Dye:


Aloha Andreas,

Thanks for your patience and persistence.  I think this might  
qualify as a bug.  Using your code, if I don't run R in a session,  
or if I run R in a session but don't name the session, everything  
works as expected.  The behavior changes for me when the session  
gets a name.


All the best,
Tom


On Dec 7, 2010, at 9:46 AM, Andreas Leha wrote:


Hi Tom,

thanks for the answer and thanks for spotting the typo.  But even  
with the typo corrected during export the noweb links are still  
exported.

  #+srcname: mod1
  #+begin_src R :tangle no :export code
print(mod1)
  #+end_src

  #+srcname: mod2
  #+begin_src R :tangle no :export code
print(mod2)
  #+end_src

  #+srcname: part1
  #+begin_src R :noweb tangle :tangle yes :exports code :session *R*
mod1
mod2
  #+end_src

Result:
...
\lstset{language=R}
\begin{lstlisting}
print(mod1)
print(mod2)
\end{lstlisting}
...



Am 07.12.2010 20:33, schrieb Thomas S. Dye:


Aloha Andreas,

On Dec 7, 2010, at 8:49 AM, Andreas Leha wrote:


Hi Tom,

thanks for this answer.  This indeed comes closer to what I want.

But, some comments:

(1) There seems to be an error in the manual:
In the manual the :noweb tangle header argument is given  
as :noweb yes,

which is why I missed that option.


I believe this is fixed at the source now, but am not sure how  
long it will take to propagate to the distributed documentation.



(2) The noweb link are expanded *always* (i.e. execution, export,
tangle) even with the :noweb tangle option:
 #+srcname: mod1
 #+begin_src R :tangle no :export code
   print(mod1)
 #+end_src

 #+srcname: mod2
 #+begin_src R :tangle no :export code
   print(mod2)
 #+end_src

 #+srcname: part1
 #+begin_src R :noweb tangle :tangle yes :export code :session *R*
   mod1
   mod2
 #+end_src




Perhaps this has to do with using :export instead of the correct  
header argument, :exports?



(3) I am looking for an option to disable the noweb link expansion
during *export* only.  However, as I understand it, the :noweb  
tangle
header option is supposed to disable the expansion also for  
*execution*.


This isn't how it works for me.  :noweb tangle inhibits noweb  
expansion during export only.




So, is this not possible right now?



It is possible now.  If the :exports header argument doesn't fix  
your problem, come back to the list.


All the best,
Tom


Cheers,
Andreas



Am 07.12.2010 19:37, schrieb Thomas S. Dye:

Aloha Andreas,

Perhaps :noweb tangle will do what you want.

hth,
Tom

On Dec 7, 2010, at 7:38 AM, Andreas Leha wrote:


Hi all,

I have a question about exporting source code blocks.  Say, I  
have
several modules (mod1, mod2), that build a bigger part (part1)  
of my

program, e.g.:


#+srcname: mod1
#+begin_src R :tangle no :export code
  print(mod1)
#+end_src

#+srcname: mod2
#+begin_src R :tangle no :export code
  print(mod2)
#+end_src

#+srcname: part1
#+begin_src R :noweb yes :tangle yes :export code :session *R*
  mod1
  mod2
#+end_src


Now during the tangling I would like to tangle just the full  
part1 -
with noweb links being expanded.  Also during execution the  
noweb links

should be expanded.  This is not a problem.

But at the same time, during the export I'd like to export all  
three
code snippets, but I'd prefer the noweb links not to be  
expanded.  Is

that possible?

Thanks in advance,
Andreas

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Universitätsmedizin Göttingen
Abteilung Medizinische Statistik
Humboldtallee 32
37073 Göttingen

Tel: +49 (0)551 39-10710
Fax: +49 (0)551 39-4995

http://www.ams.med.uni-goettingen.de/amsneu/leha.html



University Medical Center Göttingen
Department for Medical Statistics
Humboldtallee 32
37073 Göttingen
Germany

Phone: +49 (0) 551 39-10710
Fax: +49 (0) 551 39-4995

http://www.ams.med.uni-goettingen.de/amsneu/leha-en.html


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Abteilung Medizinische Statistik
Humboldtallee 32

[Orgmode] source code block export no expansion

2010-12-07 Thread Andreas Leha
Hi all,

I have a question about exporting source code blocks.  Say, I have
several modules (mod1, mod2), that build a bigger part (part1) of my
program, e.g.:


  #+srcname: mod1
  #+begin_src R :tangle no :export code
print(mod1)
  #+end_src

  #+srcname: mod2
  #+begin_src R :tangle no :export code
print(mod2)
  #+end_src

  #+srcname: part1
  #+begin_src R :noweb yes :tangle yes :export code :session *R*
mod1
mod2
  #+end_src

 
Now during the tangling I would like to tangle just the full part1 -
with noweb links being expanded.  Also during execution the noweb links
should be expanded.  This is not a problem.

But at the same time, during the export I'd like to export all three
code snippets, but I'd prefer the noweb links not to be expanded.  Is
that possible?

Thanks in advance,
Andreas



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Re: [Orgmode] source code block export no expansion

2010-12-07 Thread Thomas S. Dye

Aloha Andreas,

Perhaps :noweb tangle will do what you want.

hth,
Tom

On Dec 7, 2010, at 7:38 AM, Andreas Leha wrote:


Hi all,

I have a question about exporting source code blocks.  Say, I have
several modules (mod1, mod2), that build a bigger part (part1) of my
program, e.g.:


 #+srcname: mod1
 #+begin_src R :tangle no :export code
   print(mod1)
 #+end_src

 #+srcname: mod2
 #+begin_src R :tangle no :export code
   print(mod2)
 #+end_src

 #+srcname: part1
 #+begin_src R :noweb yes :tangle yes :export code :session *R*
   mod1
   mod2
 #+end_src


Now during the tangling I would like to tangle just the full part1 -
with noweb links being expanded.  Also during execution the noweb  
links

should be expanded.  This is not a problem.

But at the same time, during the export I'd like to export all three
code snippets, but I'd prefer the noweb links not to be expanded.  Is
that possible?

Thanks in advance,
Andreas

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Re: [Orgmode] source code block export no expansion

2010-12-07 Thread Andreas Leha
Hi Tom,

thanks for this answer.  This indeed comes closer to what I want.

But, some comments:

(1) There seems to be an error in the manual:
In the manual the :noweb tangle header argument is given as :noweb yes,
which is why I missed that option.

(2) The noweb link are expanded *always* (i.e. execution, export,
tangle) even with the :noweb tangle option:
  #+srcname: mod1
  #+begin_src R :tangle no :export code
print(mod1)
  #+end_src

  #+srcname: mod2
  #+begin_src R :tangle no :export code
print(mod2)
  #+end_src

  #+srcname: part1
  #+begin_src R :noweb tangle :tangle yes :export code :session *R*
mod1
mod2
  #+end_src


(3) I am looking for an option to disable the noweb link expansion
during *export* only.  However, as I understand it, the :noweb tangle
header option is supposed to disable the expansion also for *execution*.


So, is this not possible right now?

Cheers,
Andreas



Am 07.12.2010 19:37, schrieb Thomas S. Dye:
 Aloha Andreas,

 Perhaps :noweb tangle will do what you want.

 hth,
 Tom

 On Dec 7, 2010, at 7:38 AM, Andreas Leha wrote:

 Hi all,

 I have a question about exporting source code blocks.  Say, I have
 several modules (mod1, mod2), that build a bigger part (part1) of my
 program, e.g.:


  #+srcname: mod1
  #+begin_src R :tangle no :export code
print(mod1)
  #+end_src

  #+srcname: mod2
  #+begin_src R :tangle no :export code
print(mod2)
  #+end_src

  #+srcname: part1
  #+begin_src R :noweb yes :tangle yes :export code :session *R*
mod1
mod2
  #+end_src


 Now during the tangling I would like to tangle just the full part1 -
 with noweb links being expanded.  Also during execution the noweb links
 should be expanded.  This is not a problem.

 But at the same time, during the export I'd like to export all three
 code snippets, but I'd prefer the noweb links not to be expanded.  Is
 that possible?

 Thanks in advance,
 Andreas

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-- 
Andreas Leha

Universitätsmedizin Göttingen
Abteilung Medizinische Statistik
Humboldtallee 32
37073 Göttingen

Tel: +49 (0)551 39-10710
Fax: +49 (0)551 39-4995

http://www.ams.med.uni-goettingen.de/amsneu/leha.html



University Medical Center Göttingen
Department for Medical Statistics
Humboldtallee 32
37073 Göttingen
Germany

Phone: +49 (0) 551 39-10710
Fax: +49 (0) 551 39-4995

http://www.ams.med.uni-goettingen.de/amsneu/leha-en.html




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Re: [Orgmode] source code block export no expansion

2010-12-07 Thread Andreas Leha
Hi Tom,

thanks for the answer and thanks for spotting the typo.  But even with
the typo corrected during export the noweb links are still exported.
  #+srcname: mod1
  #+begin_src R :tangle no :export code
print(mod1)
  #+end_src

  #+srcname: mod2
  #+begin_src R :tangle no :export code
print(mod2)
  #+end_src

  #+srcname: part1
  #+begin_src R :noweb tangle :tangle yes :exports code :session *R*
mod1
mod2
  #+end_src

Result:
...
\lstset{language=R}
\begin{lstlisting}
print(mod1)
print(mod2)
\end{lstlisting}
...



Am 07.12.2010 20:33, schrieb Thomas S. Dye:
 Aloha Andreas,

 On Dec 7, 2010, at 8:49 AM, Andreas Leha wrote:

 Hi Tom,

 thanks for this answer.  This indeed comes closer to what I want.

 But, some comments:

 (1) There seems to be an error in the manual:
 In the manual the :noweb tangle header argument is given as :noweb yes,
 which is why I missed that option.

 I believe this is fixed at the
 source now, but am not sure how long it will take to propagate to the
 distributed documentation.

 (2) The noweb link are expanded *always* (i.e. execution, export,
 tangle) even with the :noweb tangle option:
  #+srcname: mod1
  #+begin_src R :tangle no :export code
print(mod1)
  #+end_src

  #+srcname: mod2
  #+begin_src R :tangle no :export code
print(mod2)
  #+end_src

  #+srcname: part1
  #+begin_src R :noweb tangle :tangle yes :export code :session *R*
mod1
mod2
  #+end_src



 Perhaps this has to do with using :export instead of the correct
 header argument, :exports?

 (3) I am looking for an option to disable the noweb link expansion
 during *export* only.  However, as I understand it, the :noweb tangle
 header option is supposed to disable the expansion also for *execution*.

 This isn't how it works for me.  :noweb tangle inhibits noweb expansion 
 during export only.


 So, is this not possible right now?


 It is possible now.  If the :exports header argument doesn't fix your
 problem, come back to the list.

 All the best,
 Tom

 Cheers,
 Andreas



 Am 07.12.2010 19:37, schrieb Thomas S. Dye:
 Aloha Andreas,

 Perhaps :noweb tangle will do what you want.

 hth,
 Tom

 On Dec 7, 2010, at 7:38 AM, Andreas Leha wrote:

 Hi all,

 I have a question about exporting source code blocks.  Say, I have
 several modules (mod1, mod2), that build a bigger part (part1) of my
 program, e.g.:


 #+srcname: mod1
 #+begin_src R :tangle no :export code
   print(mod1)
 #+end_src

 #+srcname: mod2
 #+begin_src R :tangle no :export code
   print(mod2)
 #+end_src

 #+srcname: part1
 #+begin_src R :noweb yes :tangle yes :export code :session *R*
   mod1
   mod2
 #+end_src


 Now during the tangling I would like to tangle just the full part1 -
 with noweb links being expanded.  Also during execution the noweb links
 should be expanded.  This is not a problem.

 But at the same time, during the export I'd like to export all three
 code snippets, but I'd prefer the noweb links not to be expanded.  Is
 that possible?

 Thanks in advance,
 Andreas

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 -- 
 Andreas Leha

 Universitätsmedizin Göttingen
 Abteilung Medizinische Statistik
 Humboldtallee 32
 37073 Göttingen

 Tel: +49 (0)551 39-10710
 Fax: +49 (0)551 39-4995

 http://www.ams.med.uni-goettingen.de/amsneu/leha.html



 University Medical Center Göttingen
 Department for Medical Statistics
 Humboldtallee 32
 37073 Göttingen
 Germany

 Phone: +49 (0) 551 39-10710
 Fax: +49 (0) 551 39-4995

 http://www.ams.med.uni-goettingen.de/amsneu/leha-en.html


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-- 
Andreas Leha

Universitätsmedizin Göttingen
Abteilung Medizinische Statistik
Humboldtallee 32
37073 Göttingen

Tel: +49 (0)551 39-10710
Fax: +49 (0)551 39-4995

http://www.ams.med.uni-goettingen.de/amsneu/leha.html



University Medical Center Göttingen
Department for Medical Statistics
Humboldtallee 32
37073 Göttingen
Germany

Phone: +49 (0) 551 39-10710
Fax: +49 (0) 551 39-4995

http://www.ams.med.uni-goettingen.de/amsneu/leha-en.html



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Re: [Orgmode] source code block export no expansion

2010-12-07 Thread Thomas S. Dye

Aloha Andreas,

Thanks for your patience and persistence.  I think this might qualify  
as a bug.  Using your code, if I don't run R in a session, or if I run  
R in a session but don't name the session, everything works as  
expected.  The behavior changes for me when the session gets a name.


All the best,
Tom


On Dec 7, 2010, at 9:46 AM, Andreas Leha wrote:


Hi Tom,

thanks for the answer and thanks for spotting the typo.  But even  
with the typo corrected during export the noweb links are still  
exported.

  #+srcname: mod1
  #+begin_src R :tangle no :export code
print(mod1)
  #+end_src

  #+srcname: mod2
  #+begin_src R :tangle no :export code
print(mod2)
  #+end_src

  #+srcname: part1
  #+begin_src R :noweb tangle :tangle yes :exports code :session *R*
mod1
mod2
  #+end_src

Result:
...
\lstset{language=R}
\begin{lstlisting}
print(mod1)
print(mod2)
\end{lstlisting}
...



Am 07.12.2010 20:33, schrieb Thomas S. Dye:


Aloha Andreas,

On Dec 7, 2010, at 8:49 AM, Andreas Leha wrote:


Hi Tom,

thanks for this answer.  This indeed comes closer to what I want.

But, some comments:

(1) There seems to be an error in the manual:
In the manual the :noweb tangle header argument is given as :noweb  
yes,

which is why I missed that option.


I believe this is fixed at the source now, but am not sure how long  
it will take to propagate to the distributed documentation.



(2) The noweb link are expanded *always* (i.e. execution, export,
tangle) even with the :noweb tangle option:
 #+srcname: mod1
 #+begin_src R :tangle no :export code
   print(mod1)
 #+end_src

 #+srcname: mod2
 #+begin_src R :tangle no :export code
   print(mod2)
 #+end_src

 #+srcname: part1
 #+begin_src R :noweb tangle :tangle yes :export code :session *R*
   mod1
   mod2
 #+end_src




Perhaps this has to do with using :export instead of the correct  
header argument, :exports?



(3) I am looking for an option to disable the noweb link expansion
during *export* only.  However, as I understand it, the :noweb  
tangle
header option is supposed to disable the expansion also for  
*execution*.


This isn't how it works for me.  :noweb tangle inhibits noweb  
expansion during export only.




So, is this not possible right now?



It is possible now.  If the :exports header argument doesn't fix  
your problem, come back to the list.


All the best,
Tom


Cheers,
Andreas



Am 07.12.2010 19:37, schrieb Thomas S. Dye:

Aloha Andreas,

Perhaps :noweb tangle will do what you want.

hth,
Tom

On Dec 7, 2010, at 7:38 AM, Andreas Leha wrote:


Hi all,

I have a question about exporting source code blocks.  Say, I have
several modules (mod1, mod2), that build a bigger part (part1)  
of my

program, e.g.:


#+srcname: mod1
#+begin_src R :tangle no :export code
  print(mod1)
#+end_src

#+srcname: mod2
#+begin_src R :tangle no :export code
  print(mod2)
#+end_src

#+srcname: part1
#+begin_src R :noweb yes :tangle yes :export code :session *R*
  mod1
  mod2
#+end_src


Now during the tangling I would like to tangle just the full  
part1 -
with noweb links being expanded.  Also during execution the  
noweb links

should be expanded.  This is not a problem.

But at the same time, during the export I'd like to export all  
three
code snippets, but I'd prefer the noweb links not to be  
expanded.  Is

that possible?

Thanks in advance,
Andreas

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--
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Universitätsmedizin Göttingen
Abteilung Medizinische Statistik
Humboldtallee 32
37073 Göttingen

Tel: +49 (0)551 39-10710
Fax: +49 (0)551 39-4995

http://www.ams.med.uni-goettingen.de/amsneu/leha.html



University Medical Center Göttingen
Department for Medical Statistics
Humboldtallee 32
37073 Göttingen
Germany

Phone: +49 (0) 551 39-10710
Fax: +49 (0) 551 39-4995

http://www.ams.med.uni-goettingen.de/amsneu/leha-en.html


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Universitätsmedizin Göttingen
Abteilung Medizinische Statistik
Humboldtallee 32
37073 Göttingen

Tel: +49 (0)551 39-10710
Fax: +49 (0)551 39-4995

http://www.ams.med.uni-goettingen.de/amsneu/leha.html



University Medical Center Göttingen
Department for Medical Statistics
Humboldtallee 32
37073 Göttingen
Germany

Phone: +49 (0) 551 39-10710
Fax: +49 (0) 551 39-4995

http://www.ams.med.uni-goettingen.de/amsneu/leha-en.html


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Re: [Orgmode] source code block export no expansion

2010-12-07 Thread Andreas Leha
Hi Tom,

thanks a lot for looking into it!  Fixing this is unfortunately off my
limits.

But for me the unnamed session is a valid work-around for me, since I do
not need several sessions right now.  Thanks for this hint.

Cheers,
Andreas



Am 07.12.2010 21:14, schrieb Thomas S. Dye:
 Aloha Andreas,

 Thanks for your patience and persistence.  I think this might qualify
 as a bug.  Using your code, if I don't run R in a session, or if I run
 R in a session but don't name the session,
 everything works as expected.  The behavior changes for me when the
 session gets a name.

 All the best,
 Tom


 On Dec 7, 2010, at 9:46 AM, Andreas Leha wrote:

 Hi Tom,

 thanks for the answer and thanks for spotting the typo.  But even
 with the typo corrected during export the noweb links are still exported.
   #+srcname: mod1
   #+begin_src R :tangle no :export code
 print(mod1)
   #+end_src

   #+srcname: mod2
   #+begin_src R :tangle no :export code
 print(mod2)
   #+end_src

   #+srcname: part1
   #+begin_src R :noweb tangle :tangle yes :exports code :session *R*
 mod1
 mod2
   #+end_src

 Result:
 ...
 \lstset{language=R}
 \begin{lstlisting}
 print(mod1)
 print(mod2)
 \end{lstlisting}
 ...



 Am 07.12.2010 20:33, schrieb Thomas S. Dye:
 Aloha Andreas,

 On Dec 7, 2010, at 8:49 AM, Andreas Leha wrote:

 Hi Tom,

 thanks for this answer.  This indeed comes closer to what I want.

 But, some comments:

 (1) There seems to be an error in the manual:
 In the manual the :noweb tangle header argument is given as :noweb yes,
 which is why I missed that option.

 I believe this is fixed at the
 source now, but am not sure how long it will take to propagate to
 the distributed documentation.

 (2) The noweb link are expanded *always* (i.e. execution, export,
 tangle) even with the :noweb tangle option:
  #+srcname: mod1
  #+begin_src R :tangle no :export code
print(mod1)
  #+end_src

  #+srcname: mod2
  #+begin_src R :tangle no :export code
print(mod2)
  #+end_src

  #+srcname: part1
  #+begin_src R :noweb tangle :tangle yes :export code :session *R*
mod1
mod2
  #+end_src



 Perhaps this has to do with using :export instead of the correct
 header argument, :exports?

 (3) I am looking for an option to disable the noweb link expansion
 during *export* only.  However, as I understand it, the :noweb tangle
 header option is supposed to disable the expansion also for
 *execution*.

 This isn't how it works for me.  :noweb tangle inhibits noweb expansion 
 during export only.


 So, is this not possible right now?


 It is possible now.  If the :exports header argument doesn't fix
 your problem, come back to the list.

 All the best,
 Tom

 Cheers,
 Andreas



 Am 07.12.2010 19:37, schrieb Thomas S. Dye:
 Aloha Andreas,

 Perhaps :noweb tangle will do what you want.

 hth,
 Tom

 On Dec 7, 2010, at 7:38 AM, Andreas Leha wrote:

 Hi all,

 I have a question about exporting source code blocks.  Say, I have
 several modules (mod1, mod2), that build a bigger part (part1) of my
 program, e.g.:


 #+srcname: mod1
 #+begin_src R :tangle no :export code
   print(mod1)
 #+end_src

 #+srcname: mod2
 #+begin_src R :tangle no :export code
   print(mod2)
 #+end_src

 #+srcname: part1
 #+begin_src R :noweb yes :tangle yes :export code :session *R*
   mod1
   mod2
 #+end_src


 Now during the tangling I would like to tangle just the full part1 -
 with noweb links being expanded.  Also during execution the noweb
 links
 should be expanded.  This is not a problem.

 But at the same time, during the export I'd like to export all three
 code snippets, but I'd prefer the noweb links not to be expanded.  Is
 that possible?

 Thanks in advance,
 Andreas

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 -- 
 Andreas Leha

 Universitätsmedizin Göttingen
 Abteilung Medizinische Statistik
 Humboldtallee 32
 37073 Göttingen

 Tel: +49 (0)551 39-10710
 Fax: +49 (0)551 39-4995

 http://www.ams.med.uni-goettingen.de/amsneu/leha.html



 University Medical Center Göttingen
 Department for Medical Statistics
 Humboldtallee 32
 37073 Göttingen
 Germany

 Phone: +49 (0) 551 39-10710
 Fax: +49 (0) 551 39-4995

 http://www.ams.med.uni-goettingen.de/amsneu/leha-en.html


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 -- 
 Andreas Leha

 Universitätsmedizin Göttingen
 Abteilung Medizinische Statistik
 Humboldtallee 32
 37073 Göttingen

 Tel: +49 (0)551