Re: [O] Namespace problem org-mode / Clojure
A belated, but very big thanks to both of you! It works perfectly now :) Best, Volker On Thu, Mar 13, 2014 at 4:18 PM, Bastien b...@gnu.org wrote: Hi, Soapy Smith soapy-sm...@comcast.net writes: I installed the update and ran Volker's test code. It works! The namespace is preserved from block-to-block. Thank you Bastien! You're welcome! I experimented with the :session option, however, I am now not sure I understand how it is supposed to work. Me neither :) I see there are discussions on the cider-emacs mailing list about session-handling for cider -- let makes sure someone there can test sessions in Org Babel and report any problem or possible enhancement. Thanks in advance, -- Bastien
Re: [O] Namespace problem org-mode / Clojure
That's great! A big thanks to Bastien for fixing the elisp, and keeping Clojure code blocks working smoothly. Speaking of org-mode and Clojure... You may be interested in the recent Clojure org-mode postings at the Google group: https://groups.google.com/forum/#!topic/clojure/hWqPXn1_pK4 https://groups.google.com/forum/#!topic/clojure/V8p3Q9UaNYw I'm planning to look at this later. It looks like quite a body of work using org-mode + Clojure. Regards, Greg On Wed, 2014-03-19 at 15:30 +0100, Volker Strobel wrote: A belated, but very big thanks to both of you! It works perfectly now :) Best, Volker
Re: [O] Namespace problem org-mode / Clojure
Hi, Soapy Smith soapy-sm...@comcast.net writes: I installed the update and ran Volker's test code. It works! The namespace is preserved from block-to-block. Thank you Bastien! You're welcome! I experimented with the :session option, however, I am now not sure I understand how it is supposed to work. Me neither :) I see there are discussions on the cider-emacs mailing list about session-handling for cider -- let makes sure someone there can test sessions in Org Babel and report any problem or possible enhancement. Thanks in advance, -- Bastien
Re: [O] Namespace problem org-mode / Clojure
I installed the update and ran Volker's test code. It works! The namespace is preserved from block-to-block. Thank you Bastien! I experimented with the :session option, however, I am now not sure I understand how it is supposed to work. I believed it would cause the code block to switch namespaces with a unique session name, however, it does not do this. My older system (7.9 org) behaves the same. Regards, Greg On Mon, 2014-03-03 at 21:35 -0500, Soapy Smith wrote: Hi Bastien- I will check it tomorrow and report. Thank you! Regarding TODOs related to Clojure code blocks; where is the best place for them? Greg
Re: [O] Namespace problem org-mode / Clojure
Hi Volker and Greg, I hopefully fixed this in master. Can you pull and test? Thanks, -- Bastien
Re: [O] Namespace problem org-mode / Clojure
Hi Bastien- I will check it tomorrow and report. Thank you! Regarding TODOs related to Clojure code blocks; where is the best place for them? Greg On Mon, 2014-03-03 at 13:54 +0100, Bastien wrote: Hi Volker and Greg, I hopefully fixed this in master. Can you pull and test? Thanks,
Re: [O] Namespace problem org-mode / Clojure
On Tue, 2014-02-25 at 06:20 -0500, Soapy Smith wrote: I will add this issue to the list of TODOs for Clojure code blocks. One thing I can do quickly is see if the problem exists in version 7.9 org with nrepl (prior to CIDER). I have a machine which still has the old configuration. I will try later today and report. Regards, Greg (alias Soapy Smith) The namespaces worked perfectly on the older machine with org 7.9 and nrepl. The problem is apparently isolated to the newest configuration using CIDER with org 8. Regards, Greg
Re: [O] Namespace problem org-mode / Clojure
Hi Soapy, thank you! I feel at ease knowing that you could replicate the behavior, as I was trying to find the error in my settings for a long, long time (and as mentioned before, it did work for some time, and I've no clue why - I've played around with some settings in the init file). And yes, adding an explicit namespace declaration (ns, in-ns) to every code block works, but that's a rather roundabout way (I've many small snippets in the same namespace) and it produces a bit 'unsightly', tangled code. So, I'd be really glad, if this issue could be processed. Best, Volker Soapy Smith soapy-sm...@comcast.net writes: Hi Volker- I tried the your example code blocks on my system, and I concur with most of the behavior you described. org-babel-execute-buffer does not work, as it comes back with error repl not connected. It did not cause a crash. However, if I add explicit namespace declaration to the 2nd block, it works! This is true even thought the 3rd block does not(???). I was thinking back to why I never encountered this problem, and it is because I have almost always used an explicit namespace declaration at the top of the block. Fortunately, after the first block, you don't have to use the optional parameters, includes etc. In your example (ns environment.my-test) added to subsequent code blocks you wish to execute in the same namespace should be sufficient. I think this should be considered the work-around until someone can explain what is going on, or, even better, can fix this. I'm the person who updated the worg documentation for Clojure code blocks. I'm thinking about adding a list of TODOs at the bottom, as there have been some other requests recently to the function behavior. This issue definitely will go on the list. Hopefully Bastien is monitoring and can comment if this is appropriate to add to the Clojure specific worg page (or should it go somewhere else). Regards, Greg -- Sent with my mu4e
Re: [O] Namespace problem org-mode / Clojure
I will add this issue to the list of TODOs for Clojure code blocks. One thing I can do quickly is see if the problem exists in version 7.9 org with nrepl (prior to CIDER). I have a machine which still has the old configuration. I will try later today and report. Regards, Greg (alias Soapy Smith) On Tue, 2014-02-25 at 10:22 +0100, Volker Strobel wrote: Hi Soapy, thank you! I feel at ease knowing that you could replicate the behavior, as I was trying to find the error in my settings for a long, long time (and as mentioned before, it did work for some time, and I've no clue why - I've played around with some settings in the init file). And yes, adding an explicit namespace declaration (ns, in-ns) to every code block works, but that's a rather roundabout way (I've many small snippets in the same namespace) and it produces a bit 'unsightly', tangled code. So, I'd be really glad, if this issue could be processed. Best, Volker
Re: [O] Namespace problem org-mode / Clojure
Hi Tom- I'm not yet good at elisp, but looking at the ob-clojure.el file, the header option :package is only associated with slime, not cider? Regards, Greg On Fri, 2014-02-21 at 12:36 -1000, Thomas S. Dye wrote: Aloha Volker, I don't use Clojure, but ob-clojure.el defines a header argument :package. You should be able to do something like: #+header: :package org-works.core to execute code in that name space. hth, Tom
Re: [O] Namespace problem org-mode / Clojure
Hi Volker- I tried the your example code blocks on my system, and I concur with most of the behavior you described. org-babel-execute-buffer does not work, as it comes back with error repl not connected. It did not cause a crash. However, if I add explicit namespace declaration to the 2nd block, it works! This is true even thought the 3rd block does not(???). I was thinking back to why I never encountered this problem, and it is because I have almost always used an explicit namespace declaration at the top of the block. Fortunately, after the first block, you don't have to use the optional parameters, includes etc. In your example (ns environment.my-test) added to subsequent code blocks you wish to execute in the same namespace should be sufficient. I think this should be considered the work-around until someone can explain what is going on, or, even better, can fix this. I'm the person who updated the worg documentation for Clojure code blocks. I'm thinking about adding a list of TODOs at the bottom, as there have been some other requests recently to the function behavior. This issue definitely will go on the list. Hopefully Bastien is monitoring and can comment if this is appropriate to add to the Clojure specific worg page (or should it go somewhere else). Regards, Greg
Re: [O] Namespace problem org-mode / Clojure
Soapy Smith soapy-sm...@comcast.net writes: Hi Tom- I'm not yet good at elisp, but looking at the ob-clojure.el file, the header option :package is only associated with slime, not cider? Regards, Greg I think so. It looks like cider and nrepl use a different variable, ns, which isn't exposed as a header argument. Tom -- Thomas S. Dye http://www.tsdye.com
Re: [O] Namespace problem org-mode / Clojure
Aloha Volker, I don't use Clojure, but ob-clojure.el defines a header argument :package. You should be able to do something like: #+header: :package org-works.core to execute code in that name space. hth, Tom Volker Strobel volker.strobe...@gmail.com writes: Hi, I'm trying to use org-mode with Clojure and already posted my problem at https://groups.google.com/forum/#!topic/clojure/lnZWUH4XxJM All my code blocks get evaluated in the namespace user, even if I evaluate the (ns ...) code block first. EXAMPLE (core.org in src/org-works of Leiningen project): --- #+BEGIN_SRC clojure :tangle core.clj (ns org-works.core (:gen-class)) #+END_SRC #+RESULTS: : nil #+BEGIN_SRC clojure :tangle core.clj (in-ns 'org-works.core) (def a 5) #+END_SRC #+RESULTS: : #'org-works.core/a #+BEGIN_SRC clojure :tangle core.clj (def b 5) #+END_SRC #+RESULTS: : #'user/b -- Funnily enough, it did work once for a few hours (i.e. the vars were declared in the namespace org-works.core), but then it stopped working. Now I tried to reinstall emacs 24.3 and follow all the instructions on http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-clojure.html Here are some further details of my system configuration: (M-x org-version: *Org-mode version 8.2.5h (release_8.2.5h-643-gd0ae56 @ /home/pold/org-mode/lisp/*). I also tried to copy the content of the ob-clojure.el file directly to my .emacs. My .emacs only has a minimal content: (require 'package) (add-to-list 'package-archives '(marmalade . http://marmalade-repo.org/packages/;)) (package-initialize) (defvar my-packages '(starter-kit starter-kit-lisp starter-kit-bindings starter-kit-eshell clojure-mode clojure-test-mode cider)) (dolist (p my-packages) (when (not (package-installed-p p)) (package-install p))) (add-to-list 'load-path /home/pold/org-mode/lisp) (require 'org) (require 'ob-clojure) (setq org-babel-clojure-backend 'cider) (require 'cider) My installed packages are: (clojure-test-mode cider clojure-mode pkg-info epl dash starter-kit-bindings starter-kit-eshell starter-kit-lisp elisp-slime-nav starter-kit magit ido-ubiquitous smex find-file-in-project idle-highlight-mode paredit). Any ideas what's going wrong here? Thanks! Best, Volker Hi, I'm trying to use org-mode with Clojure and already posted my problem at https://groups.google.com/forum/#!topic/clojure/lnZWUH4XxJM All my code blocks get evaluated in the namespace user, even if I evaluate the (ns ...) code block first. EXAMPLE (core.org in src/org-works of Leiningen project): --- #+BEGIN_SRC clojure :tangle core.clj (ns org-works.core (:gen-class)) #+END_SRC #+RESULTS: : nil #+BEGIN_SRC clojure :tangle core.clj (in-ns 'org-works.core) (def a 5) #+END_SRC #+RESULTS: : #'org-works.core/a #+BEGIN_SRC clojure :tangle core.clj (def b 5) #+END_SRC #+RESULTS: : #'user/b -- Funnily enough, it did work once for a few hours (i.e. the vars were declared in the namespace org-works.core), but then it stopped working. Now I tried to reinstall emacs 24.3 and follow all the instructions on http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-clojure.html Here are some further details of my system configuration: (M-x org-version: Org-mode version 8.2.5h (release_8.2.5h-643-gd0ae56 @ /home/pold/org-mode/lisp/). I also tried to copy the content of the ob-clojure.el file directly to my .emacs. My .emacs only has a minimal content: (require 'package) (add-to-list 'package-archives '(marmalade . http://marmalade-repo.org/packages/;)) (package-initialize) (defvar my-packages '(starter-kit starter-kit-lisp starter-kit-bindings starter-kit-eshell clojure-mode clojure-test-mode cider)) (dolist (p my-packages) (when (not (package-installed-p p)) (package-install p))) (add-to-list 'load-path /home/pold/org-mode/lisp) (require 'org) (require 'ob-clojure) (setq org-babel-clojure-backend 'cider) (require 'cider) My installed packages are: (clojure-test-mode cider clojure-mode pkg-info epl dash starter-kit-bindings starter-kit-eshell starter-kit-lisp elisp-slime-nav starter-kit magit ido-ubiquitous smex find-file-in-project idle-highlight-mode paredit). Any ideas what's going wrong here? Thanks! Best, Volker -- Thomas S. Dye http://www.tsdye.com
Re: [O] Namespace problem org-mode / Clojure
Thanks for your answer, Tom! I tried to modify my org file like this: - #+header: :package org-works.core #+BEGIN_SRC clojure :tangle core.clj (ns org-works.core (:gen-class)) #+END_SRC #+header: :package org-works.core #+BEGIN_SRC clojure :tangle core.clj (def a 5) #+END_SRC --- But then, 'M-x org-babel-execute-buffer' results in a emacs crash (can't edit anything anymore, nor close the frame). Best, Volker 2014-02-21 23:36 GMT+01:00 Thomas S. Dye t...@tsdye.com: Aloha Volker, I don't use Clojure, but ob-clojure.el defines a header argument :package. You should be able to do something like: #+header: :package org-works.core to execute code in that name space. hth, Tom Volker Strobel volker.strobe...@gmail.com writes: Hi, I'm trying to use org-mode with Clojure and already posted my problem at https://groups.google.com/forum/#!topic/clojure/lnZWUH4XxJM All my code blocks get evaluated in the namespace user, even if I evaluate the (ns ...) code block first. EXAMPLE (core.org in src/org-works of Leiningen project): --- #+BEGIN_SRC clojure :tangle core.clj (ns org-works.core (:gen-class)) #+END_SRC #+RESULTS: : nil #+BEGIN_SRC clojure :tangle core.clj (in-ns 'org-works.core) (def a 5) #+END_SRC #+RESULTS: : #'org-works.core/a #+BEGIN_SRC clojure :tangle core.clj (def b 5) #+END_SRC #+RESULTS: : #'user/b -- Funnily enough, it did work once for a few hours (i.e. the vars were declared in the namespace org-works.core), but then it stopped working. Now I tried to reinstall emacs 24.3 and follow all the instructions on http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-clojure.html Here are some further details of my system configuration: (M-x org-version: *Org-mode version 8.2.5h (release_8.2.5h-643-gd0ae56 @ /home/pold/org-mode/lisp/*). I also tried to copy the content of the ob-clojure.el file directly to my .emacs. My .emacs only has a minimal content: (require 'package) (add-to-list 'package-archives '(marmalade . http://marmalade-repo.org/packages/;)) (package-initialize) (defvar my-packages '(starter-kit starter-kit-lisp starter-kit-bindings starter-kit-eshell clojure-mode clojure-test-mode cider)) (dolist (p my-packages) (when (not (package-installed-p p)) (package-install p))) (add-to-list 'load-path /home/pold/org-mode/lisp) (require 'org) (require 'ob-clojure) (setq org-babel-clojure-backend 'cider) (require 'cider) My installed packages are: (clojure-test-mode cider clojure-mode pkg-info epl dash starter-kit-bindings starter-kit-eshell starter-kit-lisp elisp-slime-nav starter-kit magit ido-ubiquitous smex find-file-in-project idle-highlight-mode paredit). Any ideas what's going wrong here? Thanks! Best, Volker Hi, I'm trying to use org-mode with Clojure and already posted my problem at https://groups.google.com/forum/#!topic/clojure/lnZWUH4XxJM All my code blocks get evaluated in the namespace user, even if I evaluate the (ns ...) code block first. EXAMPLE (core.org in src/org-works of Leiningen project): --- #+BEGIN_SRC clojure :tangle core.clj (ns org-works.core (:gen-class)) #+END_SRC #+RESULTS: : nil #+BEGIN_SRC clojure :tangle core.clj (in-ns 'org-works.core) (def a 5) #+END_SRC #+RESULTS: : #'org-works.core/a #+BEGIN_SRC clojure :tangle core.clj (def b 5) #+END_SRC #+RESULTS: : #'user/b -- Funnily enough, it did work once for a few hours (i.e. the vars were declared in the namespace org-works.core), but then it stopped working. Now I tried to reinstall emacs 24.3 and follow all the instructions on http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-clojure.html Here are some further details of my system configuration: (M-x org-version: Org-mode version 8.2.5h (release_8.2.5h-643-gd0ae56 @ /home/pold/org-mode/lisp/). I also tried to copy the content of the ob-clojure.el file directly to my .emacs. My .emacs only has a minimal content: (require 'package) (add-to-list 'package-archives '(marmalade . http://marmalade-repo.org/packages/;)) (package-initialize) (defvar my-packages '(starter-kit starter-kit-lisp starter-kit-bindings starter-kit-eshell clojure-mode clojure-test-mode cider)) (dolist (p my-packages) (when (not (package-installed-p p)) (package-install p))) (add-to-list 'load-path /home/pold/org-mode/lisp) (require 'org) (require 'ob-clojure) (setq org-babel-clojure-backend 'cider) (require 'cider) My installed packages are: (clojure-test-mode cider clojure-mode pkg-info epl dash starter-kit-bindings
Re: [O] Namespace problem org-mode / Clojure
Ouch! You'll want advice from an expert then. All the best, Tom Volker Strobel volker.strobe...@gmail.com writes: Thanks for your answer, Tom! I tried to modify my org file like this: - #+header: :package org-works.core #+BEGIN_SRC clojure :tangle core.clj (ns org-works.core (:gen-class)) #+END_SRC #+header: :package org-works.core #+BEGIN_SRC clojure :tangle core.clj (def a 5) #+END_SRC --- But then, 'M-x org-babel-execute-buffer' results in a emacs crash (can't edit anything anymore, nor close the frame). Best, Volker 2014-02-21 23:36 GMT+01:00 Thomas S. Dye t...@tsdye.com: Aloha Volker, I don't use Clojure, but ob-clojure.el defines a header argument :package. You should be able to do something like: #+header: :package org-works.core to execute code in that name space. hth, Tom Volker Strobel volker.strobe...@gmail.com writes: Hi, I'm trying to use org-mode with Clojure and already posted my problem at https://groups.google.com/forum/#!topic/clojure/lnZWUH4XxJM All my code blocks get evaluated in the namespace user, even if I evaluate the (ns ...) code block first. EXAMPLE (core.org in src/org-works of Leiningen project): --- #+BEGIN_SRC clojure :tangle core.clj (ns org-works.core (:gen-class)) #+END_SRC #+RESULTS: : nil #+BEGIN_SRC clojure :tangle core.clj (in-ns 'org-works.core) (def a 5) #+END_SRC #+RESULTS: : #'org-works.core/a #+BEGIN_SRC clojure :tangle core.clj (def b 5) #+END_SRC #+RESULTS: : #'user/b -- Funnily enough, it did work once for a few hours (i.e. the vars were declared in the namespace org-works.core), but then it stopped working. Now I tried to reinstall emacs 24.3 and follow all the instructions on http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-clojure.html Here are some further details of my system configuration: (M-x org-version: *Org-mode version 8.2.5h (release_8.2.5h-643-gd0ae56 @ /home/pold/org-mode/lisp/*). I also tried to copy the content of the ob-clojure.el file directly to my .emacs. My .emacs only has a minimal content: (require 'package) (add-to-list 'package-archives '(marmalade . http://marmalade-repo.org/packages/;)) (package-initialize) (defvar my-packages '(starter-kit starter-kit-lisp starter-kit-bindings starter-kit-eshell clojure-mode clojure-test-mode cider)) (dolist (p my-packages) (when (not (package-installed-p p)) (package-install p))) (add-to-list 'load-path /home/pold/org-mode/lisp) (require 'org) (require 'ob-clojure) (setq org-babel-clojure-backend 'cider) (require 'cider) My installed packages are: (clojure-test-mode cider clojure-mode pkg-info epl dash starter-kit-bindings starter-kit-eshell starter-kit-lisp elisp-slime-nav starter-kit magit ido-ubiquitous smex find-file-in-project idle-highlight-mode paredit). Any ideas what's going wrong here? Thanks! Best, Volker Hi, I'm trying to use org-mode with Clojure and already posted my problem at https://groups.google.com/forum/#!topic/clojure/lnZWUH4XxJM All my code blocks get evaluated in the namespace user, even if I evaluate the (ns ...) code block first. EXAMPLE (core.org in src/org-works of Leiningen project): --- #+BEGIN_SRC clojure :tangle core.clj (ns org-works.core (:gen-class)) #+END_SRC #+RESULTS: : nil #+BEGIN_SRC clojure :tangle core.clj (in-ns 'org-works.core) (def a 5) #+END_SRC #+RESULTS: : #'org-works.core/a #+BEGIN_SRC clojure :tangle core.clj (def b 5) #+END_SRC #+RESULTS: : #'user/b -- Funnily enough, it did work once for a few hours (i.e. the vars were declared in the namespace org-works.core), but then it stopped working. Now I tried to reinstall emacs 24.3 and follow all the instructions on http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-clojure.html Here are some further details of my system configuration: (M-x org-version: Org-mode version 8.2.5h (release_8.2.5h-643-gd0ae56 @ /home/pold/org-mode/lisp/). I also tried to copy the content of the ob-clojure.el file directly to my .emacs. My .emacs only has a minimal content: (require 'package) (add-to-list 'package-archives '(marmalade . http://marmalade-repo.org/packages/;)) (package-initialize) (defvar my-packages '(starter-kit starter-kit-lisp starter-kit-bindings starter-kit-eshell clojure-mode clojure-test-mode cider)) (dolist (p my-packages) (when (not (package-installed-p p)) (package-install p))) (add-to-list 'load-path /home/pold/org-mode/lisp) (require 'org) (require 'ob-clojure) (setq org-babel-clojure-backend 'cider)
