Re: [O] Don't ask, don't run
Eric Schulte gmail.com> writes: > There is no way to customize `org-confirm-evaluate' to achieve this > behavior, however it can be accomplished through creative use of the > :eval header argument, by using the `org-export-current-backend' > variable to inhibit evaluation during export. > > #+begin_src emacs-lisp :eval (if org-export-current-backend "never" > "yes") :exports results > (message "launch missles") > #+end_src I see, thanks. Since I'm new to this, can I confirm my understanding here? It tests whether the 'org-export-current-backend' variable is set, which means we're currently exporting, and if so, we set the :eval argument to "never". Otherwise we set it to "yes", which means evaluate it without asking. Assuming that understanding is correct, I have a couple of followup questions. 1) http://orgmode.org/manual/eval.html doesn't list the "yes" option, 2) Is there a similar variable I might test to check whether it's currently doing an explicit C-c C-c action? If there were, I might prefer something like :eval (if org-export-current-backend "never" (if org-doing-c-c-c-c "yes" "query")), so that I cover some other scenario besides export or C-c C-c. 3) Finally, is there a way to add this argument fanciness implicitly to *all* the source blocks in my file? Or will it have to go on all of them? Thanks much. -Ken
Re: [O] calculating column averages
Jude DaShiell shellworld.net> writes: > > In this case I don't want to tell org-mode how many rows to calculate, and > I put a table together with an averages line in its own footer section. Since you have a header & footer, one solution is to use a formula like this: :=vmean(@I..@II) -Ken
[O] LaTeX export crashes
Hi, the following document makes a LaTeX export (C-c C-e d) crash with
"Args out of range: "", -1, 0". After that, exporting (to any format)
dies with the same error.
--
#+TITLE: Test doc
#+AUTHOR: Ken Williams
Some stuff.
#+begin_src R
5+5
#+end_src
--
Is this a known problem?
If I either omit the R source block, or add a top-level outline
element to the document, then the export succeeds. For now as a
workaround I guess I'll add a header.
Thanks,
-Ken
Emacs : GNU Emacs 23.3.1 (i386-mingw-nt6.1.7600)
of 2011-03-10 on 3249CTO
Package: Org-mode version 7.7
current state:
==
(setq
org-log-done 'time
org-export-latex-after-initial-vars-hook '(org-beamer-after-initial-vars)
org-speed-command-hook '(org-speed-command-default-hook
org-babel-speed-command-hook)
org-babel-load-languages '((emacs-lisp) (R . t))
org-metaup-hook '(org-babel-load-in-session-maybe)
org-after-todo-state-change-hook '(org-clock-out-if-current)
org-alphabetical-lists t
org-export-blocks-postblock-hook '(org-exp-res/src-name-cleanup)
org-export-html-style "\n
<!--/*--><![CDATA[/*><!--*/\n .src {
background-color: #F5FFF5; position: relative; overflow: visible;
margin-right: auto; }\n .src:before { position: absolute;
top: -15px; background: #ff; padding: 1px; border: 1px solid
#00; font-size: small; }\n .src-sh:before { content: 'sh';
}\n .src-bash:before { content: 'sh'; }\n .src-R:before{
content: 'R'; }\n .src-perl:before { content: 'Perl'; }\n
.src-sql:before { content: 'SQL'; }\n .example {
background-color: #FFF5F5; }\n/*]]>*/-->\n"
org-export-latex-format-toc-function 'org-export-latex-format-toc-default
org-export-preprocess-hook '((lambda nil
(org-set-local (quote
org-complex-heading-regexp)
"^\\(\\*+\\)[
]+\\(?:\\(TODO\\|DONE\\)\\>\\)?\\(?:[ ]*\\(\\[#.\\]\\)\\)?[
]*\\(.*?\\)\\(?:[ ]+\\(:[[:alnum:]_@#%:]+:\\)\\)?[]*$")
)
)
org-tab-first-hook '(org-hide-block-toggle-maybe
org-src-native-tab-command-maybe org-babel-hide-result-toggle-maybe)
org-src-mode-hook '(org-src-babel-configure-edit-buffer
org-src-mode-configure-edit-buffer)
org-confirm-shell-link-function 'yes-or-no-p
org-export-first-hook '(org-beamer-initialize-open-trackers)
org-agenda-before-write-hook '(org-agenda-add-entry-text)
org-babel-pre-tangle-hook '(save-buffer)
org-cycle-hook '(org-cycle-hide-archived-subtrees
org-cycle-hide-drawers org-cycle-show-empty-lines
org-optimize-window-after-visibility-change)
org-export-preprocess-before-normalizing-links-hook
'(org-remove-file-link-modifiers)
org-mode-hook '(#[nil "\300\301\302\303\304$\207" [org-add-hook
change-major-mode-hook org-show-block-all append local]
5]
#[nil "\300\301\302\303\304$\207"
[org-add-hook change-major-mode-hook
org-babel-show-result-all append local] 5]
org-babel-result-hide-spec org-babel-hide-all-hashes)
org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point
org-babel-execute-safely-maybe)
org-confirm-elisp-link-function 'yes-or-no-p
org-export-interblocks '((lob org-babel-exp-lob-one-liners) (src
org-babel-exp-inline-src-blocks))
org-clock-out-hook '(org-clock-remove-empty-clock-drawer)
org-occur-hook '(org-first-headline-recenter)
org-from-is-user-regexp nil
org-export-babel-evaluate nil
org-export-preprocess-before-selecting-backend-code-hook
'(org-beamer-select-beamer-code)
org-confirm-babel-evaluate nil
org-export-latex-final-hook '(org-beamer-amend-header
org-beamer-fix-toc org-beamer-auto-fragile-frames
org-beamer-place-default-actions-for-lists)
org-metadown-hook '(org-babel-pop-to-session-maybe)
org-export-blocks '((src org-babel-exp-src-block nil) (comment
org-export-blocks-format-comment t)
(ditaa org-export-blocks-format-ditaa nil) (dot
org-export-blocks-format-dot nil))
)
[O] LaTeX export crashes
Hi, the following document makes a LaTeX export (C-c C-e d) crash with "Args out of range: "", -1, 0". After that, -- #+TITLE: Test doc #+AUTHOR: Ken Williams Some stuff. #+begin_src R 5+5 #+end_src -- Is this a known problem? If I either omit the R source block, or add a top-level outline element to the document, then the export succeeds. For now as a workaround I guess I'll add a header. Thanks, -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] LaTeX export crashes
On Thu, Oct 13, 2011 at 4:48 PM, Ken Williams wrote:
> Hi, the following document makes a LaTeX export (C-c C-e d) crash with
> "Args out of range: "", -1, 0". After that, exporting (to any format)
> dies with the same error.
> [snip]
Then Sebastien Vauban wrote:
> Works for me, with Org-mode version 7.7 (release_7.7.381.ge8629.dirty).
Here's a full stack trace, does this make it any more evident what's going on?
-Ken
Debugger entered--Lisp error: (args-out-of-range "" -1 0)
substring("" -1)
(string= "\n" (substring body sub-length))
(if (string= "\n" (substring body sub-length)) (substring body 0
sub-length) body)
(let* ((body ...) (sub-length ...)) (if (string= "\n" ...)
(substring body 0 sub-length) body))
(org-babel-clean-text-properties (let* (... ...) (if ... ... body)))
(let* ((block-indentation ...) (lang ...) (lang-headers ...)
(switches ...) (body ...) (preserve-indentation ...)) (list lang
(with-temp-buffer ...) (org-babel-merge-params
org-babel-default-header-args ... ... ... ...) switches
block-indentation))
org-babel-parse-src-block-match()
(setq info (org-babel-parse-src-block-match))
(save-excursion (goto-char head) (setq info
(org-babel-parse-src-block-match)) (setq indent (car ...)) (setq info
(butlast info)) (while (and ... ...) (setf ... ...)) (when (looking-at
org-babel-src-name-w-name-regexp) (setq name ...) (when ... ...)))
(if (setq head (org-babel-where-is-src-block-head)) (save-excursion
(goto-char head) (setq info ...) (setq indent ...) (setq info ...)
(while ... ...) (when ... ... ...)) (when (save-excursion ... ...)
(setq info ...)))
(let ((case-fold-search t) head info name indent) (if (setq head
...) (save-excursion ... ... ... ... ... ...) (when ... ...)) (when
(and info ...) (setf ... ...)) (when info (append info ...)))
org-babel-get-src-block-info(light)
(let* ((info ...) (lang ...) (raw-params ...) hash) (when info (when
... ... ...) (setf ... ...) (org-babel-exp-do-export info ... hash)))
(save-excursion (goto-char (match-beginning 0)) (let* (... ... ...
hash) (when info ... ... ...)))
org-babel-exp-src-block("" #("R" 0 1 (font-lock-fontified t fontified nil)))
apply(org-babel-exp-src-block "" #("R" 0 1 (font-lock-fontified t
fontified nil)))
(if (memq type org-export-blocks-witheld) "" (apply func body headers))
(progn (if (memq type org-export-blocks-witheld) "" (apply func body
headers)))
(unwind-protect (progn (if ... "" ...)) (set-match-data
save-match-data-internal (quote evaporate)))
(let ((save-match-data-internal ...)) (unwind-protect (progn ...)
(set-match-data save-match-data-internal ...)))
(save-match-data (if (memq type org-export-blocks-witheld) "" (apply
func body headers)))
(let ((replacement ...)) (when replacement (delete-region
match-start match-end) (goto-char match-start) (insert replacement)
(unless preserve-indent ...)))
(progn (let (...) (when replacement ... ... ... ...)))
(if (setq func (cadr ...)) (progn (let ... ...)))
(when (setq func (cadr ...)) (let (...) (when replacement ... ... ... ...)))
(let* ((match-start ...) (body-start ...) (indentation ...)
(inner-re ...) (type ...) (headers ...) (balanced 1) (preserve-indent
...) match-end) (while (and ... ...) (if ... ... ...)) (when (not ...)
(error "unbalanced begin/end_%s blocks with %S" type ...)) (setq
match-end (match-end 0)) (unless preserve-indent (setq body ...))
(unless (memq type types) (setq types ...)) (save-match-data
(interblock start match-start)) (when (setq func ...) (let ... ...)))
(while (re-search-forward beg-re nil t) (let* (... ... ... ... ...
... ... ... match-end) (while ... ...) (when ... ...) (setq match-end
...) (unless preserve-indent ...) (unless ... ...) (save-match-data
...) (when ... ...)) (setq start (point)))
(let ((beg-re "^\\([ ]*\\)#\\+begin_\\(\\S-+\\)[ ]*\\(.*\\)?[
\n]")) (while (re-search-forward beg-re nil t) (let* ... ... ... ...
... ... ... ...) (setq start ...)))
(progn (fset (quote interblock) (function* ...)) (goto-char
(point-min)) (setq start (point)) (let (...) (while ... ... ...))
(interblock start (point-max)) (run-hooks (quote
org-export-blocks-postblock-hook)))
(unwind-protect (progn (fset ... ...) (goto-char ...) (setq start
...) (let ... ...) (interblock start ...) (run-hooks ...)) (if
--cl-letf-bound-- (fset ... --cl-letf-save--) (fmakunbound ...)))
(let* ((--cl-letf-bound-- ...) (--cl-letf-save-- ...))
(unwind-protect (progn ... ... ... ... ... ...) (if --cl-letf-bound--
... ...)))
(letf ((... ...)) (goto-char (point-min)) (setq start (point)) (let
(...) (while ... ... ...)) (interblock start (point-max)) (run-hooks
(quote org-export-blocks-postblock-hook)))
(letf* ((... ...)) (goto-char (point-min)) (setq start (point)) (let
(...) (while ... ... ...)) (interblock sta
Re: [O] LaTeX export crashes
On Mon, Oct 17, 2011 at 4:52 PM, Nick Dokos wrote: > Ken Williams wrote: > >> Here's a full stack trace, does this make it any more evident what's going >> on? >> > > Not really: you have not mentioned what version you are using. I did post my complete config, which this message was a direct reply to: http://article.gmane.org/gmane.emacs.orgmode/47841 I probably confused matters by posting first without my config, from the wrong address, so I thought it wouldn't make it to the list. > Chances are you are running an older version which has the problem, Seb is > running > a recent 7.7 which does not exhibit the problem (I tried it too: works for > me as well with Org-mode version 7.7 (release_7.7.392.g35d92)). > So upgrade to latest and see if you can reproduce the problem. Nope, I'm already running 7.7. -Ken
Re: [O] LaTeX export crashes
On Mon, Oct 17, 2011 at 8:31 PM, Nick Dokos wrote: > > As I pointed out in the subsequent message, that's not good enough: 7.7 came > out > on July 28 and the fix (at least what I *think* is the fix) did not go in > until > September 13. Ah, I see - I was thinking 7.7 came out at the end of September, not sure why I thought that. Looking at commit 597e1eb it does seem on target. I'll probably hold off upgrading until 7.8, since I'm running in a corporate environment & I can survive fine with workarounds. Thanks for your help. -Ken
Re: [O] zotero plain, org-odt, and citations in general
Jambunathan K gmail.com> writes: > > > Basically all that one can do in org-mode at the moment is insert & > > update citations, and following citation links to the entry in Zotero. > > Can you or someone provide me how such an Org file with citation > definition and reference looks like? I'd be very interested in this too. I've just started to work with Zotero and I'd assumed that to interface with org-mode I'd have to export as BiBTeX first, but if I can connect them directly that would be awesome. -Ken
[O] Hang on incomplete input
Apparently, org-mode Babel (or maybe Emacs, or ESS) will hang when given incomplete input, like the following: #+begin_src R ddply(x, #+end_src I was just tearing my hair out trying to figure out why my code was hanging, because of course it's much longer and I didn't notice the missing paren. Is this replicable on other people's platforms too? I'm using GNU Emacs on Windows, with org-mode 7.7 and ESS 5.14. There are other situations where I really wish org-mode (or Emacs, or ESS) didn't freeze up while evaluating R code - for example if I accidentally did 'debug()' on a function that's now being called, or even just on long-running calculations. Any chance evaluation could be done in a separate thread or something? Thanks. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Hang on incomplete input
Rafael wrote: > In Ubuntu 10.10, emacs 23.2 and recent org, I get an *Org-Babel Error > Output* buffer, saying: > > Error: unexpected '}' in: > "ddply(x, > }" > Execution halted I'm using: GNU Emacs 23.3 (from http://vgoulet.act.ulaval.ca/en/emacs/windows/) Windows 7 org-mode 7.7 ESS 5.14 What version of ESS do you have? Maybe that's the difference? Any suggestions for how to debug a hang like this? Is there a signal I can send it, to generate a stack trace (if signals are even possible in Windows, I'm not even sure)? -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Hang on incomplete input
> -Original Message- > From: n...@dokosmarshall.org [mailto:n...@dokosmarshall.org] On Behalf > Of Nick Dokos > Sent: Thursday, December 01, 2011 9:21 AM > > Forgive my ignorance: how do I check the ESS version? And what does ESS > have to do with R? I thought this was an R code block, but as you can > probably tell, I'm an ignoRamus. ESS is the mechanism by which org-mode interfaces with a running R process. And I think I left out a crucial piece of information in my first message: I run R in a session buffer, my full .org file looks like this: ### #+TITLE: Test doc #+AUTHOR: Ken Williams #+BABEL: :session *Rt* * My Header Some code: #+begin_src R ddply(x, #+end_src ### With that change, is the hang reproducible? > If that does not bear fruit, you can M-x toggle-debug-on-quit, run the code > block and press C-g to get a backtrace. Rinse, repeat to see whether you > always stop at the same point. It's somewhat hit-or-miss but it can be > effective sometimes. I could *SWEAR* I had tried C-g to abort the running R command (and C-c C-c, and C-c C-g, and about a dozen other things), but couldn't get it to react. Now it aborts as desired. I must have not actually tried a simple C-g. I can never remember which keys abort which aspect of operation. When I'm armed with that C-g, the hang is a much smaller issue! -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Hang on incomplete input
> -Original Message- > From: nicholas.dokos > Sent: Thursday, December 01, 2011 12:19 PM > > Note also that #+BABEL: is obsolete for versions of org more recent than Oct. > 20 or so. You seem to still be running 7.7 from late July or early August, so > you > should still be OK, but when you next upgrade, you will need to make > changes to your files. I had to change it to #+PROPERTIES: > ... for my org version. > > A good starting point on this change is Eric Schulte's message entitled > > "Standardized code block syntax and Property Accumulation merged into > Master" Thanks for the heads up, I'll make the change. But it seems like the thread you referenced might only be tangentially related to a BABEL->PROPERTIES change: http://thread.gmane.org/gmane.emacs.orgmode/49247/focus=49309 Or if it's there, I'm not seeing it. =) -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] More specific LaTeX output classes
If I export the following code to LaTeX:
--
#+begin_src R
CV.t.hat <- rowMeans(loss)[m]
CV.t.hat
#+end_src
#+results:
: [1] 1.135857
--
, then it looks like this in the *.tex file:
--
\begin{verbatim}
CV.t.hat <- rowMeans(loss)[m]
CV.t.hat
\end{verbatim}
\begin{verbatim}
[1] 1.135857
\end{verbatim}
--
So there's no distinction between input & output, nor between various types of
input (e.g. different programming languages).
Would it be possible for the export process to define various classes that
default to being exactly like 'verbatim', but could be customized? After that,
a next step might be to provide nice defaults that do things like
syntax-highlighting (through the 'minted' package, perhaps), or at least add a
visual marker distinguishing between input & output.
Or of course it's possible some of this is already implemented and I've missed
it. =)
--
Ken Williams, Senior Research Scientist
WindLogics
http://windlogics.com
CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended
recipient(s) and may contain confidential and privileged information. Any
unauthorized review, use, disclosure or distribution of any kind is strictly
prohibited. If you are not the intended recipient, please contact the sender
via reply e-mail and destroy all copies of the original message. Thank you.
[O] Subscripts in URLs
Hi, I see in http://lists.gnu.org/archive/html/emacs-orgmode/2010-08/msg01014.html that a patch was committed back in 2010 that should prevent underscores from introducing subscripts in links. However, I'm using 7.8.03 (released 2012-01-03) and when I insert a link like so: [[http://www.mmm.ucar.edu/events/ISP/presentations/JNT_forecast_evaluation_concepts.pdf]] and export to HTML, I get a link with anchor text http://www.mmm.ucar.edu/events/ISP/presentations/JNTforecastevaluationconcepts.pdf, where "forecastevaluationconcepts" is subscripted. The link *target* is correct, though. Was there a subsequent commit that changes things back, or maybe something else I'm missing? I'd like for the anchor text to just appear without org-mode's formatting stuff. Thanks. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Subscripts in URLs
From: Bastien Guerry [mailto:bastiengue...@googlemail.com] > > Ken Williams writes: > > > and export to HTML, I get a link with anchor text > > > http://www.mmm.ucar.edu/events/ISP/presentations/JNTforecastevaluati > on > > concepts.pdf, where "forecastevaluationconcepts" is subscripted. The > > link *target* is correct, though. > > Maybe you have (setq org-export-with-sub-superscripts t) or ^:t in your > buffer? Indeed, that seems to be the case. I do want to be able to use subscripts and other markup in general though, but in a URL like this it seems misplaced. Maybe we could patch the core code to only process link markup when the author has explicitly given the anchor text? Otherwise, if I'm linking to an external resource, I don't have control over whatever crazy stuff appears in the URL, and underscores are quite common. -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] Exporting inline code sections
Hi,
I noticed that exporting a document to HTML when "exports" is set to "both"
gives an error. Here's an example document:
-
#+TITLE: Example Doc
#+PROPERTY: exports both
The result is src_R{3+4} =[1] 7=.
-
The stack trace looks like this:
-
Debugger entered--Lisp error: (void-function nil)
nil("%flags")
replace-regexp-in-string("%flags" nil "#+BEGIN_SRC R%flags\n3+4\n#+END_SRC" t
t)
org-fill-template("#+BEGIN_SRC %lang%flags\n%body\n#+END_SRC" (("lang" . "R")
("flags") ("body" . "3+4")))
org-babel-exp-code(("R" "3+4" ((:comments . "") (:shebang . "") (:cache . "")
(:padline . "") (:noweb . "") (:tangle . "") (:exports . "both") (:results .
"replace") (:session . "none"
org-babel-exp-do-export(("R" "3+4" ((:comments . "") (:shebang . "") (:cache
. "") (:padline . "") (:noweb . "") (:tangle . "") (:exports . "both")
(:results . "replace") (:session . "none"))) inline)
org-babel-exp-inline-src-blocks(1 83)
#[(pair) "\211A@)\n
\"\207" [pair x start end] 4]((src org-babel-exp-inline-src-blocks))
mapcar(#[(pair) "\211A@)\n
\"\207" [pair x start end] 4] ((lob org-babel-exp-lob-one-liners) (src
org-babel-exp-inline-src-blocks)))
interblock(1 83)
byte-code("\306\307\211\211\211\211\211\211\211\211\211\211 + , - . / 0\310\311!\211 1\205)
-
I'm still at version 7.8.03, apologies if this has been addressed in a later
version already.
--
Ken Williams, Senior Research Scientist
WindLogics
http://windlogics.com
CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended
recipient(s) and may contain confidential and privileged information. Any
unauthorized review, use, disclosure or distribution of any kind is strictly
prohibited. If you are not the intended recipient, please contact the sender
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Re: [O] Exporting inline code sections
> -Original Message- > From: Ken Williams > Sent: Monday, August 13, 2012 3:37 PM > > I'm still at version 7.8.03, apologies if this has been addressed in a later > version already. FWIW, I just downloaded 7.8.11 and confirmed that the problem still exists there. I wonder if the inline-code code could use a little love in general. Another thing that would be nice to accomplish with it is to be able to control the markup - right now it forces =code= markers around the output, but it might be nice to let the result flow more naturally in whatever paragraph it's part of. That would be great for stuff like report writing, where statistics calculated dynamically could be put into the report text. -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Exporting inline code sections
> -Original Message- > From: Bastien Guerry [mailto:bastiengue...@googlemail.com] > Sent: Monday, August 13, 2012 4:56 PM > > Now fixed in git, thanks. Such service! =) > > Yes. Patch welcome! I'll have a shot at it. I'm very bad at elisp though. The other thing I just noticed was that every time I edit a table.el table with C-c ', two more spaces get inserted to the left of the table when it's reinserted into the org buffer. I tried to find where in the code that's happening (probably in org-edit-src-exit?) but I couldn't quite see it. -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Exporting inline code sections
> -Original Message- > From: Bastien Guerry [mailto:bastiengue...@googlemail.com] > Sent: Monday, August 13, 2012 4:56 PM > Ken Williams writes: > > > FWIW, I just downloaded 7.8.11 and confirmed that the problem still > > exists there. > > Now fixed in git, thanks. > Just tested it, works great, thanks. -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Exporting inline code sections
> -Original Message- > From: nicholas.do...@hp.com [mailto:nicholas.do...@hp.com] > Sent: Monday, August 13, 2012 6:34 PM > > Ken Williams wrote: > > > The other thing I just noticed was that every time I edit a table.el > > table with C-c ', two more spaces get inserted to the left of the > > table when it's reinserted into the org buffer. I tried to find where > > in the code that's happening (probably in org-edit-src-exit?) but I > > Yes. > > > couldn't quite see it. > > C-h v org-src-preserve-indentation RET Okay, I was stepping through org-edit-src-exit with the emacs debugger, getting my bearings - but now for the life of me I can't get the debugger to trigger when entering that function anymore. I do `M-x debug-on-entry org-edit-src-exit`, then put my point in a table.el table and hit `C-c '`, then hit `C-c '` again to exit the editing buffer, and no debugging happens. Can someone think of why that might be? Otherwise I have to try to simulate emacs in my head to see what this code is doing, and that's not going to be pretty. =) -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Exporting inline code sections
> -Original Message- > From: nicholas.do...@hp.com [mailto:nicholas.do...@hp.com] > Sent: Tuesday, August 14, 2012 10:20 AM > > You might want to try edebug instead of the standard debugger, MUCH better, thanks! -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] [patch] change indentation logic for edit-src
Following on a message from a few days ago, I've prepared a patch (attached) that alters the behavior of 'org-edit-src-exit' so that it no longer adds an extra 2 spaces of indentation each time a source block (or a table.el table) is edited. Previously a workaround was to set 'org-src-preserve-indentation', but without that set, you'd get the undesirable behavior. There's probably some stuff wrong with this approach - let me know. I'm new to both elisp programming and the org-mode code. I also created a little utility function 'org-prefixify', not sure whether that's kosher or not. One change that would be nice to make to it is to avoid prefixing the final line if it's blank, but I couldn't get that to work. Also - could that essentially be replaced by a call to string-insert-rectangle? -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you. From d80b7726402a39b4c8a630a86614b0ba9d7eca6a Mon Sep 17 00:00:00 2001 From: Ken Williams Date: Thu, 16 Aug 2012 13:26:44 -0500 Subject: [PATCH] Change the edit-src-save code so that it either preserves original formatting, or imposes its new indentation, but not both. --- lisp/org-src.el | 22 +++--- 1 files changed, 11 insertions(+), 11 deletions(-) diff --git a/lisp/org-src.el b/lisp/org-src.el index c110f32..61b800f 100644 --- a/lisp/org-src.el +++ b/lisp/org-src.el @@ -601,11 +601,9 @@ the language, a switch telling if the content should be in a single line." (buffer (current-buffer)) (single (org-bound-and-true-p org-edit-src-force-single-line)) (macro (eq single 'macro-definition)) -(total-nindent (+ (or org-edit-src-block-indentation 0) - org-edit-src-content-indentation)) (preserve-indentation org-src-preserve-indentation) (allow-write-back-p (org-bound-and-true-p org-edit-src-allow-write-back-p)) -(delta 0) code line col indent) +(delta 0) code line col indent total-nindent) (when allow-write-back-p (unless preserve-indentation (untabify (point-min) (point-max))) (if org-src-strip-leading-and-trailing-blank-lines @@ -640,14 +638,10 @@ the language, a switch telling if the content should be in a single line." (when (org-bound-and-true-p org-edit-src-picture) (setq preserve-indentation nil) (untabify (point-min) (point-max)) - (goto-char (point-min)) - (while (re-search-forward "^" nil t) - (replace-match ": "))) - (unless (or single preserve-indentation (= total-nindent 0)) - (setq indent (make-string total-nindent ?\ )) - (goto-char (point-min)) - (while (re-search-forward "^" nil t) - (replace-match indent))) + (org-prefixify ": ")) + (setq total-nindent (if preserve-indentation (or org-edit-src-block-indentation 0) + org-edit-src-content-indentation )) + (org-prefixify (make-string total-nindent ?\ )) (if (org-bound-and-true-p org-edit-src-picture) (setq total-nindent (+ total-nindent 2))) (setq code (buffer-string)) @@ -692,6 +686,12 @@ the language, a switch telling if the content should be in a single line." (message (or msg "" (def-edebug-spec org-src-in-org-buffer (body)) +(defun org-prefixify (s) + (unless (string= "" s) +(goto-char (point-min)) +(while (re-search-forward "^" nil t) + (replace-match s + (defun org-edit-src-save () "Save parent buffer with current state source-code buffer." (interactive) -- 1.7.9
Re: [O] [patch] change indentation logic for edit-src
Hi, I know Bastien's out of touch for a few days, but could someone say whether a patch to the mailing list is the right place to put it, or should I put it on GitHub or somewhere else? Thanks. -Ken > From: Ken Williams > Sent: Thursday, August 16, 2012 2:30 PM > To: emacs-orgmode@gnu.org > Subject: [patch] change indentation logic for edit-src > > Following on a message from a few days ago, I've prepared a patch (attached) > that alters the behavior of 'org-edit-src-exit' ... CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] Testing the git latest
I recently made some local changes to the latest git HEAD, and I wanted to run regression tests. It didn't work, though - here's the error I got: % /cygdrive/c/Program\ Files\ \(x86\)/GNU\ Emacs\ 24.1/bin/emacs -Q --batch \ -L lisp/ -L testing/ -L testing/lisp -l lisp/org.el \ -l lisp/org-id.el -l testing/org-test.el \ --eval "(progn (org-reload) (setq org-confirm-babel-evaluate nil))" \ -f org-test-run-batch-tests Searching for program: no such file or directory, /bin/zsh I'm on Cygwin, is that not a supported testing configuration maybe? -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] [patch] change indentation logic for edit-src
> -Original Message- > From: Bastien Guerry [mailto:bastiengue...@gmail.com] > Sent: Tuesday, August 21, 2012 6:14 PM > > Mh... for me there is no change. There are always 2 spaces added before > table.el tables. The prior behavior I've been seeing is that there are 2 spaces added *every time the table.el table is edited*. No matter what settings the user has, that seems like unhelpful behavior. -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] Breadcrumbs?
Has anyone ever tried implementing a "breadcrumbs"-type feature in org-mode? By that I mean something that would quickly tell you the headings up the whole path to the root, to quickly orient yourself when you're deep within a document. I was originally thinking of something always-present shown at the top of the frame, but maybe it would be better as something shown on demand in the minibuffer, possibly making it taller while shown. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Breadcrumbs?
Very nice, thanks. I like to see the top-level heading too, so I removed the (rest ...) call near the beginning. -Ken From: Anthony Lander [mailto:anth...@landerfamily.ca] Sent: Monday, September 24, 2012 7:45 PM To: Ken Williams Cc: emacs-orgmode@gnu.org Subject: Re: [O] Breadcrumbs? Hi Ken, You can bind this to a speed command. It will show you the path to the current headline (less the first heading) in the echo area, and will also copy it to the kill ring. This is the functionality I need, but it would be easy to modify to do what you want. (defun org-copy-outline-path-less-root-to-kill-ring (&optional a b) "Copy the current outline path, less the first node, to the kill ring, and echo to the echo area." (interactive "P") (let* ((bfn (buffer-file-name (buffer-base-buffer))) (case-fold-search nil) (path (rest (org-get-outline-path (setq path (append path (save-excursion (org-back-to-heading t) (if (looking-at org-complex-heading-regexp) (list (match-string 4)) (let ((formatted-path (org-format-outline-path path (1- (frame-width) (kill-new formatted-path) (message "%s" formatted-path Hope this helps, -Anthony CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] Base64 embedded images?
Has anyone ever tried embedding images directly in the HTML when exporting an org-mode file, similar to what the "SingleFile" Chrome extension does (https://github.com/gildas-lormeau/SingleFile)? This would be extremely handy, allowing me to periodically archive the page in Git, including changes to images. It also makes sharing a document dead-simple. I've seen a few similar things, e.g.: http://thread.gmane.org/gmane.emacs.orgmode/55155 http://thread.gmane.org/gmane.emacs.orgmode/11180 But what I'm hoping for is to create the image in the usual way, with a [[file:foo.png]] tag (usually this is the result of plotting something in R), and the Base64 encoding happens to all images during *export*. The above approaches create the Base64-encoded tag right in the org-mode buffer, which limits the other types of exports one can do (e.g. normal HTML, LaTeX, etc.). -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] Outline export styles
Hi, Does org-mode support different outline export styles (to HTML)? For instance, if I want something like this in the export: 1 Empirical probability distributions a. Create a vector of 1,000 uniformly-sampled random integers instead of the default: 1 Empirical probability distributions 1.1 Create a vector of 1,000 uniformly-sampled random integers is there a configuration somewhere for that? Thanks. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Outline export styles
I found the 'section-number-format' variable, which customizes nicely to do what I asked about. But on second thought, I guess that's not what I really want. Because my "Create a vector..." stuff is actually a paragraph or so, and doesn't fit nicely on one line as a headline. So it looks like I want to customize the plain-list output formats, and I'm not sure how to tie those together without specifying each one manually. -Ken > Hi, > > Does org-mode support different outline export styles (to HTML)? For > instance, if I want something like this in the export: > >1 Empirical probability distributions > >a. Create a vector of 1,000 uniformly-sampled random integers > > instead of the default: > >1 Empirical probability distributions > >1.1 Create a vector of 1,000 uniformly-sampled random integers > > is there a configuration somewhere for that? Thanks. CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] Can't get 'sh' blocks working
I'm having some trouble getting 'sh' babel blocks to work. Here's a minimal test case, with the output after pressing C-c C-c: #+begin_src sh echo foo #+end_src #+RESULTS: : Error: unexpected symbol in "echo foo" In my .emacs file, I have the following: (org-babel-do-load-languages 'org-babel-load-languages '((emacs-lisp . t) (sh . t) (R . t))) I tried to create a stack trace for this error, but I hit a snag when I did "C-u M-x org-reload RET": "Cannot open load file: /usr/local/share/emacs/24.1/lisp/org/org-agenda.el" . I'm not sure where that's coming from, I don't have any mention of agenda stuff in my .emacs. Any pointers for the 'sh' error or for getting a stack trace? Thanks. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Can't get 'sh' blocks working
Sorry I forgot to include my version information:
Emacs : GNU Emacs 24.1.1 (x86_64-unknown-linux-gnu, GTK+ Version 2.10.4)
of 2012-07-13 on x.windlogics.local
Package: Org-mode version 7.8.11
current state:
==
(setq
org-export-babel-evaluate nil
org-export-preprocess-before-selecting-backend-code-hook
'(org-beamer-select-beamer-code)
org-tab-first-hook '(org-hide-block-toggle-maybe
org-src-native-tab-command-maybe
org-babel-hide-result-toggle-maybe)
org-speed-command-hook '(org-speed-command-default-hook
org-babel-speed-command-hook)
org-occur-hook '(org-first-headline-recenter)
org-export-html-preamble-format '(("en"
"Author: mailto:%e\";>%a\nDate: %d\n")
)
org-metaup-hook '(org-babel-load-in-session-maybe)
org-export-preprocess-before-normalizing-links-hook
'(org-remove-file-link-modifiers)
org-confirm-shell-link-function 'yes-or-no-p
org-export-latex-final-hook '(org-beamer-amend-header org-beamer-fix-toc
org-beamer-auto-fragile-frames
org-beamer-place-default-actions-for-lists)
org-export-latex-after-initial-vars-hook '(org-beamer-after-initial-vars)
org-after-todo-state-change-hook '(org-clock-out-if-current)
org-src-mode-hook '(org-src-babel-configure-edit-buffer
org-src-mode-configure-edit-buffer)
org-agenda-before-write-hook '(org-agenda-add-entry-text)
org-babel-pre-tangle-hook '(save-buffer)
org-export-html-postamble nil
org-mode-hook '(#[nil "\300\301\302\303\304$\207"
[org-add-hook change-major-mode-hook org-show-block-all
append local] 5]
#[nil "\300\301\302\303\304$\207"
[org-add-hook change-major-mode-hook
org-babel-show-result-all append local] 5]
org-babel-result-hide-spec org-babel-hide-all-hashes)
org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point org-babel-execute-safely-maybe)
org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
org-cycle-show-empty-lines
org-optimize-window-after-visibility-change)
org-export-latex-format-toc-function 'org-export-latex-format-toc-default
org-export-blocks '((src org-babel-exp-src-block nil)
(export-comment org-export-blocks-format-comment t)
(ditaa org-export-blocks-format-ditaa nil)
(dot org-export-blocks-format-dot nil))
org-export-first-hook '(org-beamer-initialize-open-trackers)
org-export-interblocks '((src org-babel-exp-non-block-elements))
org-confirm-elisp-link-function 'yes-or-no-p
org-metadown-hook '(org-babel-pop-to-session-maybe)
org-export-html-postamble-format '(("en"
"Author: %a
(%e)\nDate: %d\nGenerated by
%c\n")
)
org-babel-load-languages '((emacs-lisp . t) (sh . t) (R . t))
org-alphabetical-lists t
org-clock-out-hook '(org-clock-remove-empty-clock-drawer)
org-confirm-babel-evaluate nil
)
From: Ken Williams
Sent: Wednesday, January 02, 2013 1:03 PM
To: emacs-orgmode@gnu.org
Subject: Can't get 'sh' blocks working
I'm having some trouble getting 'sh' babel blocks to work. Here's a minimal
test case, with the output after pressing C-c C-c:
#+begin_src sh
echo foo
#+end_src
#+RESULTS:
: Error: unexpected symbol in "echo foo"
In my .emacs file, I have the following:
(org-babel-do-load-languages
'org-babel-load-languages
'((emacs-lisp . t)
(sh . t)
(R . t)))
I tried to create a stack trace for this error, but I hit a snag when I did
"C-u M-x org-reload RET": "Cannot open load file:
/usr/local/share/emacs/24.1/lisp/org/org-agenda.el" . I'm not sure where
that's coming from, I don't have any mention of agenda stuff in my .emacs.
Any pointers for the 'sh' error or for getting a stack trace? Thanks.
--
Ken Williams, Senior Research Scientist
WindLogics
http://windlogics.com
CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended
recipient(s) and may contain confidential and privileged information. Any
unauthorized review, use, disclosure or distribution of any kind is strictly
prohibited. If you are not the intended recipient, please contact the sender
via reply e-mail and destroy all copies of the original message. Thank you.
[O] Problem exporting code
I'm giving a talk tomorrow on org-mode and R, and I'm having an exporting problem that's tripping me up. Usually when I export code/output sections to HTML, they get CSS classes like "src-R" for R code, "src-perl" for perl code, "example" for output. But now they're all "example". Has anyone seen this? Having different classes lets me do stuff like this: http://article.gmane.org/gmane.emacs.orgmode/46301 Maybe it's the new exporter? I'm using org-mode 7.9.3d. I can try downgrading, is there a location for older versions of orgmode? -Ken
Re: [O] Problem exporting code
Unfortunately, downgrading to 7.8.11 didn't change the behavior - all code sections are still exported to HTML as class "example". I also see that on one machine, using 7.9.2, I get the desired tag for R code export. I can't figure out what's making the difference though. On Sun, Jan 20, 2013 at 5:44 PM, Ken Williams wrote: > I'm giving a talk tomorrow on org-mode and R, and I'm having an exporting > problem that's tripping me up. > > Usually when I export code/output sections to HTML, they get CSS classes > like "src-R" for R code, "src-perl" for perl code, "example" for output. > But now they're all "example". Has anyone seen this? > > Having different classes lets me do stuff like this: > http://article.gmane.org/gmane.emacs.orgmode/46301 > > Maybe it's the new exporter? I'm using org-mode 7.9.3d. > > I can try downgrading, is there a location for older versions of orgmode? > > -Ken >
Re: [O] Problem exporting code
On Sun, Jan 20, 2013 at 9:15 PM, Eric S Fraga wrote: > Ken Williams writes: > > Unfortunately, downgrading to 7.8.11 didn't change the behavior - all >> code sections are still exported to HTML as class "example". >> I also see that on one machine, using 7.9.2, I get the desired > class="src src-R"> tag for R code export. I can't figure out what's making >> the difference though. >> > > I'm grasping at straws here, having seldom exported to HTML, but have you > loaded the languages for babel? > Yes, I believe that's set up properly, because I can do "C-c C-c" and it knows how to run my R sections and return the correct values. Also, when I "describe org-babel-load-languages", I see: org-babel-load-languages is a variable defined in `org.el'. Its value is ((emacs-lisp . t) (sh . t) (R . t) (perl . t)) I'm grasping at straws too, not knowing my way around the elisp code very well. =) -Ken
Re: [O] Problem exporting code
On Sun, Jan 20, 2013 at 10:57 PM, Ken Williams wrote: > > I'm grasping at straws too, not knowing my way around the elisp code very > well. =) > It looks like the function controlling this behavior is `org-export-format-source-code-or-example`, in org-exp.el: (if (string-match "]*\\)>\n*" rtn) (setq rtn (concat (if caption (concat "" (format "%s" caption)) "") (replace-match (format "\n" lang) t t rtn) (if caption "" "") So the tag gets inserted first, then later gets replaced by ?
Re: [O] Problem exporting code
Thanks John. Here's a small org file:
>>>>>>>>>>>>>>>>>>>>>
#+TITLE: Sample Doc
#+AUTHOR:Ken Williams
#+EMAIL: kena...@gmail.com
#+DATE: 2013-01-21
#+PROPERTY: results output
#+PROPERTY: exports both
#+LATEX_HEADER: \usepackage{amsmath}
#+begin_src R
5+5
#+end_src
#+RESULTS:
: [1] 10
<<<<<<<<<<<<<<<<<<<<<
The code gets exported to:
>>>>>>>>>>>>>>>>>>>>>
5+5
[1] 10
<<<<<<<<<<<<<<<<<<<<<
And here's my config:
>>>>>>>>>>>>>>>>>>>>>
(custom-set-variables
;; custom-set-variables was added by Custom.
;; If you edit it by hand, you could mess it up, so be careful.
;; Your init file should contain only one such instance.
;; If there is more than one, they won't work right.
'(current-language-environment "UTF-8")
'(global-font-lock-mode t nil (font-lock))
'(inhibit-splash-screen t)
'(org-alphabetical-lists t)
'(org-export-html-postamble nil)
'(org-export-html-preamble-format (quote (("en" "Author: mailto:%e\";>%a
Date: %d
"
'(org-src-preserve-indentation t)
'(show-paren-mode t)
'(tool-bar-mode nil)
'(transient-mark-mode t)
'(user-mail-address "kena...@gmail.com"))
(custom-set-faces
;; custom-set-faces was added by Custom.
;; If you edit it by hand, you could mess it up, so be careful.
;; Your init file should contain only one such instance.
;; If there is more than one, they won't work right.
'(diff-added-face ((t (:foreground "green"
'(diff-changed-face ((t (:foreground "blue" :slant italic :weight bold
'(diff-removed-face ((t (:foreground "red"
)
(setq
backup-by-copying t ; don't clobber symlinks
backup-directory-alist
'(("." . "/tmp/")))
(add-to-list 'load-path "~/share/emacs/site-lisp/org" load-path)
(require 'org-install)
(add-to-list 'auto-mode-alist '("\\.org$" . org-mode))
(global-set-key (kbd "M--") 'ess-smart-underscore)
(org-babel-do-load-languages
'org-babel-load-languages
'((emacs-lisp . t)
(sh . t)
(R . t)
(perl . t)))
(setq org-export-html-style
"
<!--/*--><![CDATA[/*><!--*/
.src { background-color: #F5FFF5; position: relative;
overflow: visible; margin-right: auto; }
.src:before { position: absolute; top: -15px; background:
#ff; padding: 1px; border: 1px solid #00; font-size: small; }
.src-sh:before { content: 'sh'; }
.src-bash:before { content: 'sh'; }
.src-R:before{ content: 'R'; }
.src-perl:before { content: 'Perl'; }
.src-java:before { content: 'Java'; }
.src-sql:before { content: 'SQL'; }
.example { background-color: #FFF5F5; }
/*]]>*/-->
")
(setq org-export-babel-evaluate nil)
(setq org-confirm-babel-evaluate nil)
<<<<<<<<<<<<<<<<<<<<<
-Ken
On Sun, Jan 20, 2013 at 11:36 PM, John Hendy wrote:
> On Sun, Jan 20, 2013 at 10:57 PM, Ken Williams wrote:
> >
> > On Sun, Jan 20, 2013 at 9:15 PM, Eric S Fraga wrote:
> >>
> >> Ken Williams writes:
> >>
> >>> Unfortunately, downgrading to 7.8.11 didn't change the behavior - all
> >>> code sections are still exported to HTML as class "example".
> >>> I also see that on one machine, using 7.9.2, I get the desired >>> class="src src-R"> tag for R code export. I can't figure out what's
> making
> >>> the difference though.
> >>
> >>
> >> I'm grasping at straws here, having seldom exported to HTML, but have
> you
> >> loaded the languages for babel?
> >
> >
> > Yes, I believe that's set up properly, because I can do "C-c C-c" and it
> > knows how to run my R sections and return the correct values. Also,
> when I
> > "describe org-babel-load-languages", I see:
> >
> > org-babel-load-languages is a variable defined in `org.el'.
> > Its value is ((emacs-lisp . t)
> > (sh . t)
> > (R . t)
> > (perl . t))
> >
> > I'm grasping at straws too, not knowing my way around the elisp code very
> > well. =)
>
> Just tried myself on a file lying around with embedded R code, and I
> get "" for my src blocks.
>
> Can we back up a bit and have you post a minimal config and sample
> file? Perhaps the output of =M-x org-version= as well, just to be sure
> on where emacs is pulling org code from? You might have done this; my
> apologies if so. Been following the thread from a distance as I didn't
> have much experience with html/src code export. Just thought I'd chime
> in on things I've been asked to do that usually do help the situation.
>
> With a minimal config (like your load directories and the babel
> language definitions above), we can try to replicate a bit better.
> Emacs configs get long, so it's really hard to know from user to user
> what else might be going on.
>
>
> Thanks!
> John
>
> >
> > -Ken
>
Re: [O] Problem exporting code
Argh, forgot my platform details - I'm using: Either org-mode 7.9.3d or 7.8.11 (same results) Aquamacs 2.4 (but I saw the same result using Emacs on a Linux box) Aquamacs is based on GNU Emacs 23.3.50.1. -Ken On Sun, Jan 20, 2013 at 11:36 PM, John Hendy wrote: > On Sun, Jan 20, 2013 at 10:57 PM, Ken Williams wrote: > > > > On Sun, Jan 20, 2013 at 9:15 PM, Eric S Fraga wrote: > >> > >> Ken Williams writes: > >> > >>> Unfortunately, downgrading to 7.8.11 didn't change the behavior - all > >>> code sections are still exported to HTML as class "example". > >>> I also see that on one machine, using 7.9.2, I get the desired >>> class="src src-R"> tag for R code export. I can't figure out what's > making > >>> the difference though. > >> > >> > >> I'm grasping at straws here, having seldom exported to HTML, but have > you > >> loaded the languages for babel? > > > > > > Yes, I believe that's set up properly, because I can do "C-c C-c" and it > > knows how to run my R sections and return the correct values. Also, > when I > > "describe org-babel-load-languages", I see: > > > > org-babel-load-languages is a variable defined in `org.el'. > > Its value is ((emacs-lisp . t) > > (sh . t) > > (R . t) > > (perl . t)) > > > > I'm grasping at straws too, not knowing my way around the elisp code very > > well. =) > > Just tried myself on a file lying around with embedded R code, and I > get "" for my src blocks. > > Can we back up a bit and have you post a minimal config and sample > file? Perhaps the output of =M-x org-version= as well, just to be sure > on where emacs is pulling org code from? You might have done this; my > apologies if so. Been following the thread from a distance as I didn't > have much experience with html/src code export. Just thought I'd chime > in on things I've been asked to do that usually do help the situation. > > With a minimal config (like your load directories and the babel > language definitions above), we can try to replicate a bit better. > Emacs configs get long, so it's really hard to know from user to user > what else might be going on. > > > Thanks! > John > > > > > -Ken >
Re: [O] Problem exporting code
I believe I've figured it out. I must have an old version of 'htmlize' installed somewhere, I 'edebug' traced through the code and fell through to this part: (when lang (if (featurep 'xemacs) (require 'htmlize) (require 'htmlize nil t)) (when (not (fboundp 'htmlize-region-for-paste)) ;; we do not have htmlize.el, or an old version of it (setq lang nil) (message "htmlize.el 1.34 or later is needed for source code formatting"))) I couldn't manage to set up my load-path to load htmlize 'properly' (is htmlize not able to be loaded via 'load-path' and 'require'?), but after downloading htmlize 1.43 and adding the following to my .emacs, I seem to be in business again: (load-file "~/share/emacs/site-lisp/htmlize/htmlize.el") Thanks everyone. On Mon, Jan 21, 2013 at 1:39 AM, Eric S Fraga wrote: > Ken Williams writes: > > > Thanks John. Here's a small org file: > > Data point: this works just fine for me with both old and new > exporters. And I don't even have R installed on this particular system > (hadn't realised until now ;-). > > -- > : Eric S Fraga, GnuPG: 0xC89193D8FFFCF67D > : in Emacs 24.3.50.1 and Org release_7.9.3d-826-gbe0d87 > >
Re: [O] Problem exporting code
On Mon, Jan 21, 2013 at 10:48 AM, John Hendy wrote: > > Awesome that you got it going. Do you still have =(require > 'org-install)= in your .emacs? ETA: just checked and you do. I checked > as I had an issue with emacs not using the git version of org because > I stupidly had =(require 'org-install)= before my load paths! > I do have =(require 'org)= in my .emacs. I never really know whether I'm supposed to do 'org or 'org-install, but this seems to get the ball rolling! > > The only thing that stuck out to me was this: =(add-to-list 'load-path > "~/share/emacs/site-lisp/org" load-path)= > D'oh! I changed that from a ham-fisted (setq ...) to an (add-to-list ...) call, and I forgot to take out the final argument. Thanks for spotting it. -Ken
Re: [O] Problem exporting code
On Mon, Jan 21, 2013 at 4:16 PM, John Hendy wrote: > On Mon, Jan 21, 2013 at 11:45 AM, Ken Williams wrote: > > > > On Mon, Jan 21, 2013 at 10:48 AM, John Hendy wrote: > >> > >> > >> Awesome that you got it going. Do you still have =(require > >> 'org-install)= in your .emacs? ETA: just checked and you do. I checked > >> as I had an issue with emacs not using the git version of org because > >> I stupidly had =(require 'org-install)= before my load paths! > > > > > > I do have =(require 'org)= in my .emacs. I never really know whether I'm > > supposed to do 'org or 'org-install, but this seems to get the ball > rolling! > > I don't think this is needed anymore, and in this thread I thought it > might even cause potential problems, but I could be wrong! > - http://lists.gnu.org/archive/html/emacs-orgmode/2012-10/msg00030.html > > > > >> > >> > >> The only thing that stuck out to me was this: =(add-to-list 'load-path > >> "~/share/emacs/site-lisp/org" load-path)= > > > > D'oh! I changed that from a ham-fisted (setq ...) to an (add-to-list > ...) > > call, and I forgot to take out the final argument. Thanks for spotting > it. > > > > It'd be interesting to know how htmlize didn't get updated. Is that > provided via org or your emacs variant? In my case, version 1.23a was provided by Aquamacs: /Applications/Writing/Aquamacs.app/Contents/Resources/lisp/aquamacs/htmlize.el It's been a while since I've used this machine, so I'd updated to the latest Aquamacs, but it looks like Aquamacs itself hasn't seen a release in over a year. That's probably part of the problem. I wonder if there's something else filling the niche these days? -Ken
Re: [O] Problem exporting code
On Mon, Jan 21, 2013 at 5:02 PM, John Hendy wrote: > > On Jan 21, 2013 4:51 PM, "Ken Williams" wrote: > > > > It's been a while since I've used this machine, so I'd updated to the > latest Aquamacs, but it looks like Aquamacs itself hasn't seen a release in > over a year. That's probably part of the problem. I wonder if there's > something else filling the niche these days? > > I've been using this: > - http://vgoulet.act.ulaval.ca/en/emacs/mac/ > Ah! I've been using his Emacs for Windows at work, I didn't notice there was a Mac one too. Thanks for the pointer. -Ken
Re: [O] Problem exporting code
On Tue, Jan 22, 2013 at 1:49 AM, Bastien wrote: > Hi Thomas and all, > > t...@tsdye.com (Thomas S. Dye) writes: > > > Ken Williams writes: > > > >>> I've been using this: > >>> - http://vgoulet.act.ulaval.ca/en/emacs/mac/ > > Thanks for the pointer, I was not aware of this distribution. > > > Interesting, this Emacs distribution removed Org a few days ago. > > This is a wrong move. Also, the NEWS entry in > http://vgoulet.act.ulaval.ca/pub/emacs/NEWS-mac suggests that Org's > maintainers are recommending to install Org as an external package, > which is a false statement too. > > I just wrote to Vincent asking for more details and offering to help > to ease his life as a maintainer for this Emacs distribution. > I also wrote to him and suggested he remove the (require 'org-install) statement from his default.el, because it was causing warnings for people who upgrade org. Perhaps it would be better to change it to a conditional on the version number? -Ken
[O] More decoration for babel output
Hi all,
When exporting to HTML I always add some extra CSS to my org-mode config, for
the purpose of identifying which chunks are input vs. output, and for
identifying the language of the code in code chunks. Language is identified by
a little label on the box, and input/output is identified by green/red.
Would this be helpful to include by default? Patch attached.
--
Ken Williams, Senior Research Scientist
WindLogics
http://windlogics.com
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From 37ba52c7911b88c6879179311571654ded0273dd Mon Sep 17 00:00:00 2001
From: Ken Williams
Date: Wed, 23 Jan 2013 10:14:50 -0600
Subject: [PATCH 1/1] Add background color and language-label to CSS for babel
blocks.
---
lisp/org-html.el | 24
1 files changed, 24 insertions(+), 0 deletions(-)
diff --git a/lisp/org-html.el b/lisp/org-html.el
index 224a103..5e34385 100644
--- a/lisp/org-html.el
+++ b/lisp/org-html.el
@@ -170,6 +170,30 @@ for the JavaScript code in this tag.
font-size: 90%;
overflow:auto;
}
+
+ /* Some decoration for source code blocks and their output. */
+ pre.src {
+background-color: #F5FFF5;
+position: relative;
+overflow: visible;
+margin-right: auto;
+ }
+ pre.src:before {
+position: absolute;
+top: -15px;
+background: #ff;
+padding: 1px;
+border: 1px solid #00;
+font-size: small;
+ }
+ pre.src-sh:before { content: 'sh'; }
+ pre.src-bash:before { content: 'sh'; }
+ pre.src-R:before{ content: 'R'; }
+ pre.src-perl:before { content: 'Perl'; }
+ pre.src-java:before { content: 'Java'; }
+ pre.src-sql:before { content: 'SQL'; }
+ pre.example { background-color: #FFF5F5; }
+
table { border-collapse: collapse; }
td, th { vertical-align: top; }
th.right { text-align:center; }
--
1.7.9
[O] No pictures when exporting narrowed/subtree
Hi, If I export the following document to HTML, I see the 'testout.png' plot as desired. However, if I put my cursor near "Some more text" and choose 'switch buffer/subtree export' when exporting, or if I narrow (C-x n d) to that subtree and then export, the 'testout.png' plot doesn't show up. I'm still using orgmode 7.7, but I didn't see anything pertaining to this in the Changes file for 7.8, is it still an issue there? -Ken Emacs : GNU Emacs 23.3.1 (i386-mingw-nt6.1.7600) of 2011-03-10 on 3249CTO Package: Org-mode version 7.7 ======= #+TITLE: A Document #+AUTHOR: Ken Williams #+BABEL: :session *Rt* :results output :exports both * Section 1 Some text. * Section 2 Some more text. #+begin_src R :results graphics :file testout.png plot(1:10, (1:10)^2) #+end_src #+results: [[file:testout.png]] Where's the plot? === -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] org-jira.el updated
Bao Haojun gmail.com> writes: > I have updated the org-jira.el as suggested by Bastien and Richard > Riley: Amazing. Just 120 seconds ago I got out of a meeting where we talked about using Jira more widely in our company, and I worried that I'd duplicate too much between my org-mode journals and the Jira tracker. Then I go look at the org-mode list and this is the first message I see. =) I'm going to need to upgrade to org-mode 7.8 and try this out. -Ken
Re: [O] No pictures when exporting narrowed/subtree
> -Original Message- > ... if I put my cursor near "Some more text" and choose 'switch > buffer/subtree export' when exporting, or if I narrow (C-x n d) to that > subtree and then export, the 'testout.png' plot doesn't show up. Ping - anyone able to replicate or not replicate this? -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] SO question on dynamic arguments
I asked this question on Stack Overflow today, I wonder if someone might know the answer here: http://stackoverflow.com/questions/9215216/computing-argument-values-dynamically It's about computing arguments to a "#+begin_src R" block based on previous R results. Thanks. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] I'm tripping over #+BABEL: vs. #+PROPERTY:
1) I see from http://orgmode.org/Changes.html, section "Incompatible changes",
that I have to change my #+BABEL: lines to something else, in order to upgrade
from 7.7 to 7.8.03. But I can't figure out to what.
I previously had:
#+BABEL: :session *R* :results output :exports both
#+begin_src R :exports none :results silent
setwd('c:/Users/ken/wdir')
source("src/main/R/mylib.R")
#+end_src
What does that translate to, using #+PROPERTY: syntax? I tried the following,
but then when I execute a "#+begin_src R" block, it doesn't evaluate in a
session called *R*, it just evaluates in-process. No *R* buffer is created.
#+PROPERTY: session *R*
#+PROPERTY: results output
#+PROPERTY: exports both
A pointer to some transition doc would also be great, if such a thing exists.
2) In the same list of "Incompatible changes", it says "code blocks are named
with - results are named with code block may still be labeled with named with
#+tblname: will be considered to be named results". What on earth does that
mean?? I would offer a doc patch but I can't figure it out. =)
--
Ken Williams, Senior Research Scientist
WindLogics
http://windlogics.com
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Re: [O] I'm tripping over #+BABEL: vs. #+PROPERTY:
Aha! That was the trick, thanks. How about a translation of the text for question 2)? -Ken > -Original Message- > From: Eric Schulte [mailto:eric.schu...@gmx.com] > Sent: Wednesday, March 14, 2012 1:29 PM > To: Ken Williams > Cc: emacs-orgmode@gnu.org > Subject: Re: [O] I'm tripping over #+BABEL: vs. #+PROPERTY: > > Hi Ken, > > Did you press C-c C-c on each property line after it was written? > Property lines only take effect either with C-c C-c, or when the file is first > opened. > [...] > > > 2) In the same list of "Incompatible changes", it says "code blocks > > are named with - results are named with code block may still be > > labeled with named with #+tblname: will be considered to be named > > results". What on earth does that mean?? I would offer a doc patch > > but I can't figure it out. =) CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] I'm tripping over #+BABEL: vs. #+PROPERTY:
> -Original Message- > From: Eric Schulte [mailto:eric.schu...@gmx.com] > Sent: Wednesday, March 14, 2012 1:40 PM > To: Ken Williams > Cc: emacs-orgmode@gnu.org > Subject: Re: [O] I'm tripping over #+BABEL: vs. #+PROPERTY: > > > How about a translation of the text for question 2)? > [...] > > Hope that clarifies. Cheers, Thanks. I think I see what happened - the following text (in the commit message for 7e93b90f8816346a16ad49cee22870b17c05b211) : - call lines are specified with #+call: - code blocks are named with #+name: - results are named with #+name:, however results generated by a code block may still be labeled with #+results:, and tables named with #+tblname: will be considered to be named results got mangled by the HTML builder into this: call lines are specified with #+call: code blocks are named with - results are named with code block may still be labeled with named with #+tblname: will be considered to be named results So some '#' characters probably need to be escaped. -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] Bug: Tabbing error with asterisks [7.8.03]
I have the following document:
--
#+TITLE: Test Doc
#+AUTHOR: Ken Williams
* Top header
Top paragraph.
#+begin_src R
library(testthat)
test_that("failures", {
expect_that(6, equals(9))
expect_that(6, equals(9))
expect_that(6, equals(9))
expect_that(6, equals(9))
expect_that(6, equals(9))
})
#+end_src
#+results:
#+begin_example
Error: Test failure in 'failures'
* 6 not equal to 9
Mean relative difference: 0.333
* 6 not equal to 9
Mean relative difference: 0.333
* 6 not equal to 9
Mean relative difference: 0.333
* 6 not equal to 9
Mean relative difference: 0.333
* 6 not equal to 9
Mean relative difference: 0.333
#+end_example
--
When I put the point on the top headline and hit , it doesn't fold the
complete section, it only folds up to the line "* 6 not equal to 9". So
something thinks that line is a header, even though it's within a
"#+begin_example" section.
By contrast, the syntax coloring looks correct - the lines starting with '#'
are red, and the lines inside the "#+begin_src" and "#+begin_example" sections
are gray, as expected.
Emacs : GNU Emacs 23.3.1 (i386-mingw-nt6.1.7600)
of 2011-03-10 on 3249CTO
Package: Org-mode version 7.8.03
--
Ken Williams, Senior Research Scientist
WindLogics
http://windlogics.com
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Re: [O] Bug: Tabbing error with asterisks [7.8.03]
Bastien gnu.org> writes: > Hit C-c ' twice and you'll have commas inserted before the lines > starting with an asterisk. > That works as a workaround, as long as I remember to do it. Is there a reason not to automatically do this to the return value of doing "C-c C-c" on all "#begin_src R" blocks? Also, what if I need real commas in my literal stuff? Any way to escape those? Just add one more comma, maybe? -Ken
[O] Auto-fill-mode with code sections
Hi, I use org-mode extensively with R code sections, as a scientific notebook. One annoyance I have is that when I have auto-fill-mode turned on (which is convenient for the main body parts of the document), it extends to the code section and starts auto-filling my code. Can anyone recommend a configuration that will get me folding in the body sections, but not in the code sections? It could use another mechanism besides auto-fill-mode if that's what's preferred these days, but auto-fill-mode is the one I'm familiar with. Thanks. -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Auto-fill-mode with code sections
Ping - I'm still interested in this, if anyone has any recommendations. Thanks. -Ken > From: Ken Williams > Sent: Tuesday, May 01, 2012 8:51 AM > To: emacs-orgmode@gnu.org > Subject: Auto-fill-mode with code sections > > Hi, > > I use org-mode extensively with R code sections, as a scientific notebook. > One annoyance I have is that when I have auto-fill-mode turned on (which > is convenient for the main body parts of the document), it extends to the > code section and starts auto-filling my code. > > Can anyone recommend a configuration that will get me folding in the body > sections, but not in the code sections? It could use another mechanism > besides auto-fill-mode if that's what's preferred these days, but > auto-fill-mode > is the one I'm familiar with. CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] Export width for generated SVG image?
I'm using a 'dot' section to create an SVG image, then exporting my document to
HTML:
#+BEGIN_SRC dot :exports results :file process-diag.svg
digraph {
"foo.rds" -> "foo.csv";
...
}
#+END_SRC
My diagram ends up pretty huge though, and I want to shrink it down. ":width
1000" doesn't seem to have any effect, nor does wrapping like so:
#+BEGIN_HTML
#+END_HTML
... dot diagram here ...
#+BEGIN_HTML
#+END_HTML
... because the interior SVG just overrides the width of its parent.
Any suggestions?
I'm using version 7.9.2-dist . Thanks.
--
Ken Williams, Senior Research Scientist
WindLogics
http://windlogics.com
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Re: [O] Export width for generated SVG image?
> -Original Message- > From: John Hendy [mailto:jw.he...@gmail.com] > Sent: Tuesday, March 26, 2013 3:49 PM > > Are you using the new exporter or old? I believe the old syntax would have > been: > > #+attr_html width="100%" > [[image.svg]] Beautiful, thanks. -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] attr_html for table.el tables?
Hi, I have a table that has multi-line cells (just because some of the cells have some long-ish sentences in them, and I want them to break rather than careening off the right-hand side of the page), so I'm using table.el to manage it. When I export, I wanted to get all borders shown, because without borders the structure isn't very clear. It looks like `#+attr_html` doesn't have any effect on table.el tables, correct? Is there another mechanism to specify export options when org-mode renders table.el tables to HTML? -- Ken Williams, Senior Research Scientist WindLogics http://windlogics.com CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
[O] Bug: Export of table.el to LaTeX fails [7.9.4 (7.9.4-dist @ c:/Users/kwilliams/share/emacs/site-lisp/org/)]
My email client seems to be eating the formatting in the bug report, so I'm
attaching it as a text file. Hope that's okay.
-Ken
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To: emacs-orgmode@gnu.org
Subject: Bug: Export of table.el to LaTeX fails [7.9.4 (7.9.4-dist @
c:/Users/kwilliams/share/emacs/site-lisp/org/)]
From: ken.willi...@windlogics.com
--text follows this line--
Remember to cover the basics, that is, what you expected to happen and
what in fact did happen. You don't know how to make a good report? See
http://orgmode.org/manual/Feedback.html#Feedback
Your bug report will be posted to the Org-mode mailing list.
When I try to export the following example document to LaTeX, I get a
failure "Invalid search bound (wrong side of point)". The key piece
seems to be the '...' string in the 4th cell.
=====
#+TITLE: Example Doc
#+AUTHOR: Ken Williams
* Failing table
Example:
+--+---+
|Name |Examples |
+--+---+
|foo |x ... y|
+--+---+
=
Here's a stack trace:
Debugger entered--Lisp error: (error "Invalid search bound (wrong side of
point)")
re-search-forward("\\s *\\'" 53 t)
table--buffer-substring-and-trim(54 53)
#[514
"\307\310\302@B!\310\302@B!\"\311\312!r\211q\210\313\314\315\316\317\320!\321\"\322\323%DC\216c\210eb\210\324\325\326\327#\203_ \330\224\203E \212\330\224b\210\331c\210)\202, \322\224\203S \332\333\327\211#\210\202, \332\334\335\336!\334Q!\210\202, ed{\262*\210r\300q\210\306@\204\200 `Sf\337=\203{ \340\202| \341\342\261\210\305@\330V\203\234 \343\344\305@\306@\203\224 \345\202\225 \340$c\210\202\237 \211c\210)\306\326\240\210\305\330\240\210\303\304@\3018\240\207"
[# (1 12) (5) (12) (2) (1) (nil)
table--buffer-substring-and-trim table--goto-coordinate generate-new-buffer "
*temp*" funcall make-byte-code 0 "\301\300!\205 \302\300!\207" vconcat vector
[buffer-name kill-buffer] 2 "\n\n(fn)" re-search-forward
"\\([#$~_^%{}]\\)\\|\\(\\)\\|\\([<>|]\\)" nil t 1 "\\" replace-match
"$\\backslash$" "$" match-string 3 32 "" " " "& " format
"\\multicolumn{%d}{%sl|}{%s}" "|"] 11 "\n\n(fn FROM TO)"](12 11)
table--generate-source-scan-lines(# latex (43 .
53) (101 . 111) (1 12) (5 7))
table-generate-source(latex "*org-export-table*" "caption")
org-export-latex-convert-table\.el-table()
org-export-latex-tables(t)
org-export-latex-content(#("\n\nExample:\n\n+--+---+\n|Name
|Examples |\n+--+---+\n|foo |x ... y
|\n+--+---+\n\n\n" 0 12 (fontified t) 12 24 (fontified t)
24 40 (fontified t) 40 41 (fontified t) 41 69 (fontified t org-caption nil
org-caption-shortn nil org-attributes nil org-label nil) 69 70 (fontified t) 70
82 (fontified t) 82 98 (fontified t) 98 99 (fontified t) 99 127 (fontified t
org-caption nil org-caption-shortn nil org-attributes nil org-label nil) 127
128 (fontified t) 128 140 (fontified t) 140 156 (fontified t) 156 159
(fontified t)))
org-export-latex-subcontent(((pos . 2) (level . 1) (occur . 1) (heading . #("
Failing table " 1 2 (target "sec-1" fontified t) 2 14 (target "sec-1" fontified
t))) (content . #("\n\nExample:\n\n+--+---+\n|Name
|Examples |\n+--+---+\n|foo |x ... y
|\n+--+---+\n\n\n" 0 12 (fontified t) 12 24 (fontified t)
24 40 (fontified t) 40 41 (fontified t) 41 69 (fontified t org-caption nil
org-caption-shortn nil org-attributes nil org-label nil) 69 70 (fontified t) 70
82 (fontified t) 82 98 (fontified t) 98 99 (fontified t) 99 127 (fontified t
org-caption nil org-caption-shortn nil org-attributes nil org-label nil) 127
128 (fontified t) 128 140 (fontified t) 140 156 (fontified t) 156 159
(fontified t))) (subcontent)) t)
#[(x) "\302 \"\207" [x num org-export-latex-subcontent] 3](((pos . 2)
(level . 1) (occur . 1) (heading . #(" Failing table " 1 2 (target "sec-1"
fontified t) 2 14 (target "sec-1" fontified t))) (content .
#("\n\nExample:\n\n+--+---+\n|Name |Examples
|\n+--+---+\n
Re: [O] Bug: Export of table.el to LaTeX fails [7.9.4 (7.9.4-dist @ c:/Users/kwilliams/share/emacs/site-lisp/org/)]
(org-clock-remove-empty-clock-drawer)
org-export-html-postamble nil
org-export-first-hook '(org-beamer-initialize-open-trackers)
org-mode-hook '(#[nil "\300\301\302\303\304$\207"
[org-add-hook change-major-mode-hook org-show-block-all
append local] 5]
#[nil "\300\301\302\303\304$\207"
[org-add-hook change-major-mode-hook
org-babel-show-result-all append local] 5]
org-babel-result-hide-spec org-babel-hide-all-hashes)
org-src-preserve-indentation t
org-export-latex-final-hook '(org-beamer-amend-header org-beamer-fix-toc
org-beamer-auto-fragile-frames
org-beamer-place-default-actions-for-lists)
org-export-latex-after-initial-vars-hook '(org-beamer-after-initial-vars)
org-metadown-hook '(org-babel-pop-to-session-maybe)
org-export-html-postamble-format '(("en"
"Author: %a
(%e)\nDate: %d\nGenerated by
%c\n")
)
org-src-mode-hook '(org-src-babel-configure-edit-buffer
org-src-mode-configure-edit-buffer)
org-after-todo-state-change-hook '(org-clock-out-if-current)
org-babel-tangle-lang-exts '(("perl" . "pl") ("emacs-lisp" . "el"))
org-babel-load-languages '((emacs-lisp . t) (sh . t) (plantuml . t) (R . t)
(dot . t) (perl . t))
org-confirm-shell-link-function 'yes-or-no-p
)
> -Original Message-
> From: Ken Williams
> Sent: Thursday, March 28, 2013 9:34 AM
> To: emacs-orgmode@gnu.org
> Subject: Bug: Export of table.el to LaTeX fails [7.9.4 (7.9.4-dist @
> c:/Users/kwilliams/share/emacs/site-lisp/org/)]
>
> My email client seems to be eating the formatting in the bug report, so I'm
> attaching it as a text file. Hope that's okay.
>
> -Ken
CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended
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prohibited. If you are not the intended recipient, please contact the sender
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Re: [O] Bug: Export of table.el to LaTeX fails [7.9.4 (7.9.4-dist @ c:/Users/kwilliams/share/emacs/site-lisp/org/)]
> -Original Message- > From: Nicolas Goaziou [mailto:n.goaz...@gmail.com] > Sent: Thursday, March 28, 2013 10:49 AM > To: Ken Williams > > Ken Williams writes: > > > Something apparently even ate part of the attachment - there are some > > Null bytes in there I guess. Here's a paste of the rest of the > > attachment, as viewed in `less` to zap the non-ASCIIs. > > FWIW, I cannot reproduce the problem on Org-mode version 8.0-pre > (release_8.0-pre-199-g2746c7) I can't upgrade to 8.0 here, is there anyone that could try on a 7.x platform to confirm? Are all those Null bytes & line noise in the stack trace normal, or do they look like some kind of buffer overflow or something? -Ken CONFIDENTIALITY NOTICE: This e-mail message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of any kind is strictly prohibited. If you are not the intended recipient, please contact the sender via reply e-mail and destroy all copies of the original message. Thank you.
Re: [O] Can't get dvipng to work
Rasmus gmx.us> writes: > > So in short I think the easiest course of action is upgrading to the > newest release, e.g. using ELPA (M-x list-packages). I agree - I'm trying to update now. I hadn't used ELPA before, so I tried that route and I'm getting a ton of 'ox-*' related errors like this: -- Compiling file c:/Users/kwilliams/.emacs.d/elpa/org-20130916/ox-ascii.el at Wed Sep 18 11:30:24 2013 ox-ascii.el:41:1:Error: Symbol's value as variable is void: org-list-allow- alphabetical Compiling file c:/Users/kwilliams/.emacs.d/elpa/org-20130916/ox-beamer.el at Wed Sep 18 11:30:24 2013 ox-beamer.el:117:1:Error: Symbol's value as variable is void: org-list- allow-alphabetical Compiling file c:/Users/kwilliams/.emacs.d/elpa/org-20130916/ox-html.el at Wed Sep 18 11:30:24 2013 ox-html.el:37:1:Error: Symbol's value as variable is void: org-list-allow- alphabetical ... -- I can try installing manually but it would be great if I could get ELPA working. -Ken
Re: [O] Can't get dvipng to work
Ken Williams gmail.com> writes: > I can try installing manually but it would be great if I could get ELPA > working. So I installed org-8.1.2 manually and now it does seem to be *trying* to process the images through LaTeX. But it's not succeeding. In the *Messages* buffer, I see this: Creating LaTeX Image... Failed to create dvi file from c:/Users/KWILLI~1/AppData/Local/Temp/orgtex6488Qq2.tex I pasted the contents of ~/AppData/Local/Temp/orgtex6488Qq2.log here, but I don't see anything strange in it: https://gist.github.com/kenahoo/6613374 -Ken
Re: [O] Can't get dvipng to work
Nick Dokos gmail.com> writes: > > Ken Williams gmail.com> writes: > > > I pasted the contents of ~/AppData/Local/Temp/orgtex6488Qq2.log here, but I > > don't see anything strange in it: > > > > https://gist.github.com/kenahoo/6613374 > > > > What happens if you run latex on the tex file by hand? > It succeeds: % latex orgtex6488Qq2.tex ... Output written on orgtex6488Qq2.dvi (1 page, 1304 bytes). Transcript written on orgtex6488Qq2.log. Additionally, if I run pdflatex manually on the tex file, the output is sensible. I don't know how to verify that the tex/latex Emacs is running is the same as the one I get at the command line - nor whether the failure is during tex/latex or during dvipng.
Re: [O] Can't get dvipng to work
Rasmus gmx.us> writes: > > Then try to run dvipng FILE.dvi or perhaps just dvipng FILE. Does > this work? Yes, it produces a proper output PNG that looks good, but note that the base filename has a '1' appended: % dvipng orgtex6488Qq2.dvi This is dvipng 1.14 Copyright 2002-2010 Jan-Ake Larsson [1] % ls -ltr orgtex6488Qq2* -rwx--+ 1 Administrators 1317 Sep 18 13:21 orgtex6488Qq2.tex* -rw-r--r--+ 1 kwilliams 75721 Sep 19 16:17 orgtex6488Qq2.pdf -rw-r--r--+ 1 kwilliams 8 Sep 19 16:20 orgtex6488Qq2.aux -rw-r--r--+ 1 kwilliams 1304 Sep 19 16:20 orgtex6488Qq2.dvi -rwx--+ 1 Administrators 17216 Sep 19 16:22 orgtex6488Qq2.log* -rw-r--r--+ 1 kwilliams 3883 Sep 20 09:51 orgtex6488Qq21.png This would probably be a lot easier to debug if the emacs logs included the command line strings that are being run. -Ken
