[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 [EMAIL PROTECTED] changed: What|Removed |Added Status|ASSIGNED|CLOSED Resolution||NEXTRELEASE --- Additional Comments From [EMAIL PROTECTED] 2007-04-17 10:57 EST --- Builds and installs in devel. Closing bug. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 Bug 234573 depends on bug 233848, which changed state. Bug 233848 Summary: Review Request: perl-SVG-Graph - Visualize your data in Scalable Vector Graphics (SVG) format https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233848 What|Old Value |New Value Status|NEW |ASSIGNED Resolution||NEXTRELEASE Status|ASSIGNED|CLOSED -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 [EMAIL PROTECTED] changed: What|Removed |Added BugsThisDependsOn|233848 | -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 [EMAIL PROTECTED] changed: What|Removed |Added BugsThisDependsOn||233848 -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 03:19 EST --- Created an attachment (id=151548) -- (https://bugzilla.redhat.com/bugzilla/attachment.cgi?id=151548action=view) Failed mock build's build.log Attaching Mock build.log for your reference for further changes for make test and is removing perl-Bio-ASN1-EntrezGene as BR is OK? Its giving warning in build.log now. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 03:30 EST --- It looks like many, if not, most, tests require network access, so we may have to disable all of them. It's OK to remove perl-Bio-ASN-EntrezGene, as it's the only workaround that will allow it to be installed (this is what upstream does anyway). It is added back as an auto-generated Requires for install-time, so it's OK. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 05:47 EST --- * Tue Apr 03 2007 Alex Lancaster [EMAIL PROTECTED] 1.5.2_102-4 - Disable tests because many of them require network access, add _with_check macro so they can be enabled during testing. Spec URL: http://allele5.biol.berkeley.edu/~alex/fedora/perl-bioperl.spec SRPM URL: http://allele5.biol.berkeley.edu/~alex/fedora/perl-bioperl-1.5.2_102-4.src.rpm -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 [EMAIL PROTECTED] changed: What|Removed |Added Flag|fedora-review? |fedora-review+ --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 06:36 EST --- Review: + package builds in mock (development i386). + rpmlint is silent for SRPM and for RPM. + source files match upstream url 71f22246979ee5d6e19d547319962eea bioperl-1.5.2_102.tar.bz2 + package meets naming and packaging guidelines. + specfile is properly named, is cleanly written + Spec file is written in American English. + Spec file is legible. + dist tag is present. + build root is correct. + license is open source-compatible. + License text is included in package. + %doc is present. + BuildRequires are proper. + %clean is present. + package installed properly. + Macro use appears rather consistent. + Package contains code, not content. + no headers or static libraries. + no .pc file present. + no -devel subpackage + no .la files. + no translations are available + Does owns the directories it creates. + no scriptlets present. + no duplicates in %files. + file permissions are appropriate. + make test disabled. + Provides: perl(Bio::Align::AlignI) perl(Bio::Align::DNAStatistics) perl(Bio::Align::PairwiseStatistics) perl(Bio::Align::ProteinStatistics) perl(Bio::Align::StatisticsI) perl(Bio::Align::Utilities) perl(Bio::AlignIO) perl(Bio::AlignIO::bl2seq) perl(Bio::AlignIO::clustalw) perl(Bio::AlignIO::emboss) perl(Bio::AlignIO::fasta) perl(Bio::AlignIO::largemultifasta) perl(Bio::AlignIO::maf) perl(Bio::AlignIO::mase) perl(Bio::AlignIO::mega) perl(Bio::AlignIO::meme) perl(Bio::AlignIO::metafasta) perl(Bio::AlignIO::msf) perl(Bio::AlignIO::nexus) perl(Bio::AlignIO::pfam) perl(Bio::AlignIO::phylip) perl(Bio::AlignIO::po) perl(Bio::AlignIO::prodom) perl(Bio::AlignIO::psi) perl(Bio::AlignIO::selex) perl(Bio::AlignIO::stockholm) perl(Bio::AnalysisI) perl(Bio::AnalysisI::JobI) perl(Bio::AnalysisParserI) perl(Bio::AnalysisResultI) perl(Bio::AnnotatableI) perl(Bio::Annotation::AnnotationFactory) perl(Bio::Annotation::Collection) perl(Bio::Annotation::Comment) perl(Bio::Annotation::DBLink) perl(Bio::Annotation::OntologyTerm) perl(Bio::Annotation::Reference) perl(Bio::Annotation::SimpleValue) perl(Bio::Annotation::StructuredValue) perl(Bio::Annotation::Target) perl(Bio::Annotation::TypeManager) perl(Bio::AnnotationCollectionI) perl(Bio::AnnotationI) perl(Bio::Assembly::Contig) perl(Bio::Assembly::ContigAnalysis) perl(Bio::Assembly::IO) perl(Bio::Assembly::IO::ace) perl(Bio::Assembly::IO::phrap) perl(Bio::Assembly::Scaffold) perl(Bio::Assembly::ScaffoldI) perl(Bio::Assembly::Singlet) perl(Bio::Biblio) perl(Bio::Biblio::Article) perl(Bio::Biblio::BiblioBase) perl(Bio::Biblio::Book) perl(Bio::Biblio::BookArticle) perl(Bio::Biblio::IO) perl(Bio::Biblio::IO::medline2ref) perl(Bio::Biblio::IO::medlinexml) perl(Bio::Biblio::IO::pubmed2ref) perl(Bio::Biblio::IO::pubmedxml) perl(Bio::Biblio::Journal) perl(Bio::Biblio::JournalArticle) perl(Bio::Biblio::MedlineArticle) perl(Bio::Biblio::MedlineBook) perl(Bio::Biblio::MedlineBookArticle) perl(Bio::Biblio::MedlineJournal) perl(Bio::Biblio::MedlineJournalArticle) perl(Bio::Biblio::Organisation) perl(Bio::Biblio::Patent) perl(Bio::Biblio::Person) perl(Bio::Biblio::Proceeding) perl(Bio::Biblio::Provider) perl(Bio::Biblio::PubmedArticle) perl(Bio::Biblio::PubmedBookArticle) perl(Bio::Biblio::PubmedJournalArticle) perl(Bio::Biblio::Ref) perl(Bio::Biblio::Service) perl(Bio::Biblio::TechReport) perl(Bio::Biblio::Thesis) perl(Bio::Biblio::WebResource) perl(Bio::Cluster::ClusterFactory) perl(Bio::Cluster::FamilyI) perl(Bio::Cluster::SequenceFamily) perl(Bio::Cluster::UniGene) perl(Bio::Cluster::UniGeneI) perl(Bio::ClusterI) perl(Bio::ClusterIO) perl(Bio::ClusterIO::dbsnp) perl(Bio::ClusterIO::unigene) perl(Bio::CodonUsage::IO) perl(Bio::CodonUsage::Table) perl(Bio::ConfigData) perl(Bio::Coordinate::Chain) perl(Bio::Coordinate::Collection) perl(Bio::Coordinate::ExtrapolatingPair) perl(Bio::Coordinate::GeneMapper) perl(Bio::Coordinate::Graph) perl(Bio::Coordinate::MapperI) perl(Bio::Coordinate::Pair) perl(Bio::Coordinate::Result) perl(Bio::Coordinate::Result::Gap) perl(Bio::Coordinate::Result::Match) perl(Bio::Coordinate::ResultI) perl(Bio::Coordinate::Utils) perl(Bio::DB::Ace) perl(Bio::DB::Biblio::biofetch) perl(Bio::DB::Biblio::eutils) perl(Bio::DB::Biblio::pdf) perl(Bio::DB::Biblio::soap) perl(Bio::DB::BiblioI) perl(Bio::DB::BioFetch) perl(Bio::DB::CUTG) perl(Bio::DB::DBFetch) perl(Bio::DB::EMBL) perl(Bio::DB::EUtilities) perl(Bio::DB::EUtilities::Cookie)
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 06:59 EST --- In reply to comment 4: As mock build gave me Error: Missing Dependency: perl(Bio::Index::AbstractSeq) is needed by package perl-Bio-ASN1-EntrezGene It is broken in the needsign queue, too, as extras-repoclosure also detects this. I've blacklisted the builds for now (FC-5, FC-6, development). -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 07:07 EST --- (In reply to comment #14) In reply to comment 4: As mock build gave me Error: Missing Dependency: perl(Bio::Index::AbstractSeq) is needed by package perl-Bio-ASN1-EntrezGene It is broken in the needsign queue, too, as extras-repoclosure also detects this. I've blacklisted the builds for now (FC-5, FC-6, development). These packages depend on each other, so once this package is built, perl-Bio-ASN1-EntrezGene will have it's dependency satisfied. It no longer needs perl-Bio-ASN1-EntrezGene at build-time. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 [EMAIL PROTECTED] changed: What|Removed |Added Flag||fedora-cvs? --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 07:13 EST --- New Package CVS Request === Package Name: perl-bioperl Short Description: A package of Perl tools for computational molecular biology Owners: [EMAIL PROTECTED] Branches: FC-5 FC-6 InitialCC: This directory exists in CVS as an orphaned package. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 07:30 EST --- What provides 'perl(Bio::Index::AbstractSeq)'? Comment 13 doesn't list it. But the module is part of bioperl. So what's wrong in the dependencies? -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 07:42 EST --- The dependencies are like this === rpm -q --requires perl-Bio-ASN1-EntrezGene | grep Bio perl(Bio::ASN1::EntrezGene) perl(Bio::ASN1::Sequence) perl(Bio::Index::AbstractSeq) rpm -q --provides perl-Bio-ASN1-EntrezGene perl(Bio::ASN1::EntrezGene) = 1.09 perl(Bio::ASN1::EntrezGene::Indexer) = 1.09 perl(Bio::ASN1::Sequence) = 1.09 perl(Bio::ASN1::Sequence::Indexer) = 1.09 perl-Bio-ASN1-EntrezGene = 1.091-2 rpm -q --requires perl-bioperl | grep Bio::ASN1 perl(Bio::ASN1::EntrezGene) rpm -q --provides perl-bioperl | grep Abstract perl(Bio::Index::Abstract) perl(Bio::Index::AbstractSeq) -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 07:45 EST --- Okay, then your list in comment 13 is truncated. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 08:03 EST --- Created an attachment (id=151551) -- (https://bugzilla.redhat.com/bugzilla/attachment.cgi?id=151551action=view) Complete provides list Yes, I've attached the full list the result of: rpm -q --provides perl-bioperl /tmp/bioperl-provides -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 [EMAIL PROTECTED] changed: What|Removed |Added Flag|fedora-cvs? |fedora-cvs+ --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 09:20 EST --- I think the Summary can be shortened to Perl tools for computational molecular biology. CVS ownership added. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 09:24 EST --- Alex, you may need to be careful with the old FC-5 and FC-6 branches since they still contain the previous packaging. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-02 07:36 EST --- This review blocked by now package perl-Bio-ASN1-EntrezGene. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-02 07:51 EST --- As mock build gave me Error: Missing Dependency: perl(Bio::Index::AbstractSeq) is needed by package perl-Bio-ASN1-EntrezGene But I really confused when i checked cpan, I found that missing depencecy is actually part of this(perl-bioperl) package then why its reported as its needed by perl-Bio-ASN1-EntrezGene? I am referring to http://search.cpan.org/~mingyiliu/Bio-ASN1-EntrezGene-1.091/lib/Bio/ASN1/EntrezGene.pm#PREREQUISITE Need some help But for time being not blocking CVS request already made for perl-Bio-ASN1-EntrezGene package. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 Bug 234573 depends on bug 234569, which changed state. Bug 234569 Summary: Review Request: perl-Ace - Perl module for interfacing with ACE bioinformatics databases https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234569 What|Old Value |New Value Resolution||NEXTRELEASE Status|ASSIGNED|CLOSED -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 Bug 234573 depends on bug 234568, which changed state. Bug 234568 Summary: Review Request: perl-AutoClass - Automatically define classes and objects for Perl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234568 What|Old Value |New Value Resolution||NEXTRELEASE Status|ASSIGNED|CLOSED -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 Bug 234573 depends on bug 234571, which changed state. Bug 234571 Summary: Review Request: perl-Bio-ASN1-EntrezGene - Regular expression-based Perl Parser for NCBI Entrez Gene https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234571 What|Old Value |New Value Resolution||NEXTRELEASE Status|ASSIGNED|CLOSED -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 Bug 234573 depends on bug 234454, which changed state. Bug 234454 Summary: Review Request: perl-PostScript - PostScript Perl module https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234454 What|Old Value |New Value Resolution||NEXTRELEASE Status|ASSIGNED|CLOSED -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 Bug 234573 depends on bug 233844, which changed state. Bug 233844 Summary: Review Request: perl-Convert-Binary-C - Binary data conversion using C types https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233844 What|Old Value |New Value Resolution||NEXTRELEASE Status|ASSIGNED|CLOSED -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 00:00 EST --- The problem is a circular BuildRequires on perl-Bio-ASN1-EntrezGene package. I have removed this in this update: * Mon Apr 02 2007 Alex Lancaster [EMAIL PROTECTED] 1.5.2_102-3 - Remove BuildRequires: perl(Bio::ASN1::EntrezGene), creates a circular dependency, the dependency is still found at install-time. Spec URL: http://allele5.biol.berkeley.edu/~alex/fedora/perl-bioperl.spec SRPM URL: http://allele5.biol.berkeley.edu/~alex/fedora/perl-bioperl-1.5.2_102-3.src.rpm -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 00:16 EST --- As an aside, there is currently a discussion on the bioperl-l list about where bioperl should live, on Fedora or in a third-party repository like http://biopackages.net/. See the thread at: http://lists.open-bio.org/pipermail/bioperl-l/2007-March/thread.html#25279 One of the issue is in addition to this base bioperl package residing here, there is bioperl-run which has interfaces to a number of non-free packages such as Clustal which couldn't be packaged in Fedora. Possibilities are: 1. Host the bioperl - the interfaces to non-free packages on Fedora and package the non-free interfaces on biopackages.net 2. Host all bioperl-* packages on biopackages.net I lean towards 1), but splitting up a single tarball across distributions can be rather messy. Ideas welcome. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 --- Additional Comments From [EMAIL PROTECTED] 2007-04-03 00:18 EST --- (In reply to comment #6) 1. Host the bioperl - the interfaces to non-free packages on Fedora Should read: Host all of bioperl minus the interfaces to non-free packages on Fedora -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 [EMAIL PROTECTED] changed: What|Removed |Added Status|NEW |ASSIGNED AssignedTo|[EMAIL PROTECTED]|[EMAIL PROTECTED] Flag||fedora-review? --- Additional Comments From [EMAIL PROTECTED] 2007-04-01 05:28 EST --- picking up for review. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 [EMAIL PROTECTED] changed: What|Removed |Added CC||[EMAIL PROTECTED] --- Additional Comments From [EMAIL PROTECTED] 2007-04-01 12:08 EST --- This is really great! I'm looking forward to see bioperl in Fedora. -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 [EMAIL PROTECTED] changed: What|Removed |Added BugsThisDependsOn||233848, 234454, 234568, ||234569, 234571 -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology Alias: perl-bioperl https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 [EMAIL PROTECTED] changed: What|Removed |Added BugsThisDependsOn||233844 -- Configure bugmail: https://bugzilla.redhat.com/bugzilla/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are the QA contact for the bug, or are watching the QA contact. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
