dists/10.4-transitional/unstable/main/finkinfo/sci coot.info,1.3,1.4
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv8183 Modified Files: coot.info Log Message: coot 10.4 unstable sci revision to add missing dependency Index: coot.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.3 retrieving revision 1.4 diff -u -d -r1.3 -r1.4 --- coot.info 1 Jul 2005 00:41:32 - 1.3 +++ coot.info 20 Jul 2005 00:54:11 - 1.4 @@ -1,8 +1,8 @@ Package:coot Version: 0.0.33 -Revision: 1 -BuildDepends: clipper (= cvs-14-nov-2003-10), glib, gtk+2, glut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http -Depends: clipper(= cvs-14-nov-2003-10), guile16-shlibs, gtk-canvas (= 0.1.1-20), gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), ssmlib, guile16, guile16-net-http +Revision: 2 +BuildDepends: clipper (= cvs-14-nov-2003-10), glib, gtk+2, glut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, glut +Depends: clipper(= cvs-14-nov-2003-10), guile16-shlibs, gtk-canvas (= 0.1.1-20), gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), ssmlib, guile16, guile16-net-http, glut BuildDependsOnly: false NoSetLDFLAGS: true Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-%v.tar.gz --- SF.Net email is sponsored by: Discover Easy Linux Migration Strategies from IBM. Find simple to follow Roadmaps, straightforward articles, informative Webcasts and more! Get everything you need to get up to speed, fast. http://ads.osdn.com/?ad_id=7477alloc_id=16492op=click ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/shells zsh-templates.info,1.5,1.6
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv13516 Modified Files: zsh-templates.info Log Message: zsh-templates shells/10.4 unstable new version Index: zsh-templates.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells/zsh-templates.info,v retrieving revision 1.5 retrieving revision 1.6 diff -u -d -r1.5 -r1.6 --- zsh-templates.info 6 Jul 2005 05:35:52 - 1.5 +++ zsh-templates.info 11 Aug 2005 06:15:01 - 1.6 @@ -1,8 +1,8 @@ Package: zsh-templates -Version: 0.8.3 +Version: 0.9.2 Revision: 1 Source: http://chemistry.ucsc.edu/~wgscott/mystuff/%n-%v.tgz -Source-MD5: e84043f3c2fb289adc222eb8dce915cd +Source-MD5: fbdf1e3b2b1db677c6f79aa85bedcbd4 Depends: macosx, zsh (= 4.2.1-13) License: GPL Maintainer: W. G. Scott [EMAIL PROTECTED] --- SF.Net email is Sponsored by the Better Software Conference EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile Plan-Driven Development * Managing Projects Teams * Testing QA Security * Process Improvement Measurement * http://www.sqe.com/bsce5sf ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/shells zsh-templates.info,1.6,1.7
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv16180 Modified Files: zsh-templates.info Log Message: zsh-templates shells/10.4 unstable new version Index: zsh-templates.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells/zsh-templates.info,v retrieving revision 1.6 retrieving revision 1.7 diff -u -d -r1.6 -r1.7 --- zsh-templates.info 11 Aug 2005 06:15:01 - 1.6 +++ zsh-templates.info 13 Aug 2005 00:17:51 - 1.7 @@ -1,8 +1,8 @@ Package: zsh-templates -Version: 0.9.2 +Version: 0.9.3 Revision: 1 Source: http://chemistry.ucsc.edu/~wgscott/mystuff/%n-%v.tgz -Source-MD5: fbdf1e3b2b1db677c6f79aa85bedcbd4 +Source-MD5: a59f474665a446267494bd3b84b1a220 Depends: macosx, zsh (= 4.2.1-13) License: GPL Maintainer: W. G. Scott [EMAIL PROTECTED] @@ -55,55 +55,55 @@ The latest version uses mdfile to create a fast completion for open -a without the need for a cache in 10.4, and retains the cache mechanism for 10.3.x. -. + These files work out of the box but the template files -can be modified as follows. (The %p/etc/zsh/zshenv and -%p/etc/zsh/zshrc should not have to be modified. If you +can be modified as follows. (The /sw/etc/zsh/zshenv and +/sw/etc/zsh/zshrc should not have to be modified. If you have to modify these, please report this as a bug.) -. -1. Issue sudo mkdir -p /Library/init/zsh/local-functions -. -2. Copy any file you want to modify from -%p/share/zsh/templates/Library/init/zsh into -/Library/init/zsh and then edit it there. That -file will now be read INSTEAD OF the corresponding -file in %p/share/zsh/templates/Library/init/zsh. -Anything that appears in /Users/$USER/Library/init/zsh -will be read IN ADDITION TO the other files. The directories -%p/share/zsh/templates/Library/init/zsh/local-functions -and /Library/init/zsh/local-functions are both in the -$FPATH by default; a funtion of the same name in -/Library/init/zsh/local-functions takes precedence over that -in %p/share/zsh/templates/Library/init/zsh/local-functions. -This structure permits customizations that will be preserved -during fink package upgrade. -. -3. To change the prompt theme, issue the command switch_prompt -. -4. To use with /bin/zsh, copy or link the file -%p/share/zsh/templates/etc/zshenv to /etc/zshenv and -likewise with %p/share/zsh/templates/etc/zshrc to + +1 Issue sudo mkdir -p /Library/init + +2 Issue sudo cp -R /sw/share/zsh/templates/Library/init/zsh /Library/init/. +Those files will supercede the ones just copied, so edit those to make +your desired changes, not the ones under /sw. +Anything that appears in /Users/\$USER/Library/init/zsh +will be read IN ADDITION TO the other files. + +3 To change the prompt theme, issue the command switch_prompt + +4 To use with /bin/zsh, copy or link the file +/sw/share/zsh/templates/etc/zshenv to /etc/zshenv and +likewise with /sw/share/zsh/templates/etc/zshrc to /etc/zshrc. These two files are both required and have been -designed in such a way that the should not require editing. -. -5. The faster-loading open completion function is now enabled +designed in such a way that they should not require editing. + +5 The faster-loading open completion function is now enabled by default. However, to ensure it functions optimally, type the -command enable_faster_open. This requires an up-to-date +command enable_faster_open. On 10.3 it requires an up-to-date locate database to find the various Applications. It will prompt you to update this. -. -6. By default, these scripts start Apple's X11.app (if you have it) -if it is not already running. This behavior, as well as several -somewhat hidden features of X11.app, can be enabled or disabled -by issuing the command customize_x11. -. -7. A brief description of the functions and completions + +6 You can customize the behavior of X11 by issuing +customize_x11 or customize_x11_gui. Several +somewhat hidden features of X11.app can be enabled or disabled. + +7 The commands user_setup and host_setup can be invoked +to fine-tune username and hostname completions for ssh, scp, +switch_user, and so on. + +8 The command gdirs provides a gui interface to the directory +stack. You can use an applescript-type interface instead of +a Pashua-type interface by creating a file ~/.zshenv and putting +into it the following line: +export GUIDIRS_PASHUA='no' + +9 A brief description of the functions and completions provided can be had by typing help_template_functions optionally with the function name. Only a subset are autoloaded by default. Load others individually by uncommenting autoload -U foo lines or setting the appropriate vairables indicated in the file functions.local. -. + Modifications and enhancements of zsh distributed templates were written by Gary Kerbaugh, W. G. Scott, Wataru Kagawa and
dists/10.4-transitional/unstable/main/finkinfo/shells zsh-templates.info,1.7,1.8
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv30847 Modified Files: zsh-templates.info Log Message: zsh-templates shells/10.4 unstable new version Index: zsh-templates.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells/zsh-templates.info,v retrieving revision 1.7 retrieving revision 1.8 diff -u -d -r1.7 -r1.8 --- zsh-templates.info 13 Aug 2005 00:17:51 - 1.7 +++ zsh-templates.info 13 Aug 2005 21:40:50 - 1.8 @@ -1,8 +1,8 @@ Package: zsh-templates -Version: 0.9.3 +Version: 0.9.4 Revision: 1 Source: http://chemistry.ucsc.edu/~wgscott/mystuff/%n-%v.tgz -Source-MD5: a59f474665a446267494bd3b84b1a220 +Source-MD5: cec3327a3cc6a137c2b767482605f341 Depends: macosx, zsh (= 4.2.1-13) License: GPL Maintainer: W. G. Scott [EMAIL PROTECTED] @@ -23,6 +23,8 @@ mkdir -p %i/etc/zsh # cp -rf Library/init/zsh/* %i/share/zsh/templates/Library/init/zsh/. +perl -pi.bak -e 's|/Library/init|%p/share/zsh/templates/Library/init|g' Library/LaunchAgents/* +rm -f Library/LaunchAgents/*.bak cp -rf Library/LaunchAgents/* %i/share/zsh/templates/Library/LaunchAgents/. cp -rf Applications/* %i/share/zsh/templates/Applications/. cp etc/zsh* %i/share/zsh/templates/etc/. @@ -38,16 +40,36 @@ # ln -s %p/share/zsh/templates/etc/zshenv %i/etc/zsh/zshenv ln -s %p/share/zsh/templates/etc/zshrc %i/etc/zsh/zshrc +# +mkdir -p %i/etc/profile.d +# +cat | %i/etc/profile.d/%n.sh eof-1 +# +if [[ -n \$ZSH_NAME ]];then +if [[ -z \$(/bin/launchctl list | grep zsh.fink.completion ) ]];then +/bin/launchctl load %p/share/zsh/templates/Library/LaunchAgents/zsh.fink.completion.plist +fi +if [[ -z \$(/bin/launchctl list | grep zsh.open.completion ) ]];then +/bin/launchctl load %p/share/zsh/templates/Library/LaunchAgents/zsh.open.completion.plist +fi +fi +# + +eof-1 +# +echo # This file is an empty place-holder. | %i/etc/profile.d/%n.csh +# +chmod a+x %i/etc/profile.d/%n.*sh PostInstScript: chmod a+x %p/share/zsh/templates/Library/init/zsh/local-functions/darwin/whatsnew echo -echo + +echo + echo Please issue \fink describe zsh-templates\, echo or \man zsh-templates\ for more details. echo Please issue %p/share/zsh/templates/Library/init/zsh/local-functions/darwin/whatsnew echo to find out what's new in this version. -echo + +echo + echo sleep 5 @@ -78,10 +100,9 @@ designed in such a way that they should not require editing. 5 The faster-loading open completion function is now enabled -by default. However, to ensure it functions optimally, type the -command enable_faster_open. On 10.3 it requires an up-to-date -locate database to find the various Applications. It will -prompt you to update this. +by default on 10.4, and you should not have to do anything other +than start a zsh shell. On 10.3 it requires an up-to-date +locate database to find the various Applications. 6 You can customize the behavior of X11 by issuing customize_x11 or customize_x11_gui. Several @@ -112,13 +133,7 @@ of zsh. Some of these (_open, _fink) have been modified to work faster. -The open -a completion can be further enhanced by copying the -file in /sw/share/zsh/templates/Library/LaunchAgents into -/Library/LaunchAgents in OS X 10.4. Although optional, this -greatly enhances the speed of the completion the first time it -is invoked. Similarly, a LaunchAgent for fink completions is -now provided to sync zsh completions with the database of -packages. + More details are available here: http://tinyurl.com/4k7a9 --- SF.Net email is Sponsored by the Better Software Conference EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile Plan-Driven Development * Managing Projects Teams * Testing QA Security * Process Improvement Measurement * http://www.sqe.com/bsce5sf ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.3/unstable/main/finkinfo/shells zsh-templates.info,1.21,NONE
Update of /cvsroot/fink/dists/10.3/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv31098 Removed Files: zsh-templates.info Log Message: remove zsh templates from 10.3 unstable --- zsh-templates.info DELETED --- --- SF.Net email is Sponsored by the Better Software Conference EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile Plan-Driven Development * Managing Projects Teams * Testing QA Security * Process Improvement Measurement * http://www.sqe.com/bsce5sf ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci mosflm-small.info,1.1,1.2
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv3095 Modified Files: mosflm-small.info Log Message: mosflm small display version, program version update, 10.4 unst sci Index: mosflm-small.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/mosflm-small.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- mosflm-small.info 24 Jun 2005 19:31:46 - 1.1 +++ mosflm-small.info 15 Aug 2005 16:39:15 - 1.2 @@ -1,35 +1,37 @@ Package: mosflm-small -Version: 6.2.4 +Version: 6.2.5 Revision: 1 -Type: nosource -#Source: http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver622/build-it-yourself/mosflm622.tgz +#Type: nosource +Source: http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver625/build-it-yourself/mosflm625.tgz # -# SourceDirectory: mosflm624 -NoSourceDirectory: true -# Source-MD5: 857ee0e0ba94e29e633d2f2accd7e9cb +SourceDirectory: mosflm625 +# NoSourceDirectory: true +Source-MD5: 08c0730fa588d71bed219a7763322672 Depends: x11, ccp4, ccp4lib, libjpeg-shlibs, ccp4lib-shlibs #Replaces: mosflm BuildDepends: g77, ccp4, x11, libjpeg, ccp4lib-shlibs, ccp4lib PatchScript: #!/bin/zsh -f print $PWD -cp -R $CCP4/x-windows/Mosflm . +perl -pi.bak -e 's|-lcc_dynamic||g' setup +#cp -R $CCP4/x-windows/Mosflm . CompileScript: #!/bin/zsh -f -cd Mosflm +#cd Mosflm print $PWD -make clean +#make clean mv bin/ipmosflm bin/ipmosflm-big ./to_small.csh -make +#make +./build cd bin mv ipmosflm ipmosflm-small InstallScript: #!/bin/zsh -f mkdir -p %i/bin - cd Mosflm/bin + cd bin cp ipmosflm-* %i/bin Description: X-ray data processing, small display version @@ -43,8 +45,8 @@ This small display version is suitable for laptops and lower-resolution monitors. The large version is included in CCP4 by -default and is not available separately. The small version requires -ccp4 to be installed. +default and the latest version is in the mosflm fink +package. Invoke with ipmosflm-small --- SF.Net email is Sponsored by the Better Software Conference EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile Plan-Driven Development * Managing Projects Teams * Testing QA Security * Process Improvement Measurement * http://www.sqe.com/bsce5sf ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci mosflm.info,NONE,1.1
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv3432 Added Files: mosflm.info Log Message: mosflm default display version, program version update, 10.4 unst sci --- NEW FILE: mosflm.info --- Package: mosflm Version: 6.2.5 Revision: 1 #Type: nosource Source: http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver625/build-it-yourself/mosflm625.tgz # SourceDirectory: mosflm625 # NoSourceDirectory: true Source-MD5: 08c0730fa588d71bed219a7763322672 Depends: x11, ccp4, ccp4lib, libjpeg-shlibs, ccp4lib-shlibs #Replaces: mosflm BuildDepends: g77, ccp4, x11, libjpeg, ccp4lib-shlibs, ccp4lib PatchScript: #!/bin/zsh -f print $PWD perl -pi.bak -e 's|-lcc_dynamic||g' setup #cp -R $CCP4/x-windows/Mosflm . CompileScript: #!/bin/zsh -f #cd Mosflm print $PWD #make clean #mv bin/ipmosflm bin/ipmosflm-big #./to_small.csh #make ./build cd bin mv ipmosflm ipmosflm-625 InstallScript: #!/bin/zsh -f mkdir -p %i/bin cd bin cp ipmosflm-* %i/bin/. cp ipmosflm-* %i/bin/ipmosflm cp ipmosflm-* %i/bin/mosflm Description: X-ray data processing, default display version DescDetail: Mosflm is a program for integrating single crystal diffraction data from area detectors. It is assumed that the experiment was conducted using the Arndt-Wonacott oscillation method, and also that monochromatic radiation was used. Mosflm can process data from a wide variety of modern area detectors, e.g. from Mar Research, Rigaku/MSC, ADSC, DIP etc. Invoke with ipmosflm or ipmosflm-625 or mosflm Authors: Harry Powell and Andrew G.W. Leslie MRC Laboratory of Molecular Biology Hills Road, Cambridge CB2 2QH UK E-mail: harry AT mrc-lmb DOT cam DOT ac DOT uk http://www.mrc-lmb.cam.ac.uk/harry/frames/ License: GPL Maintainer: W. G. Scott [EMAIL PROTECTED] --- SF.Net email is Sponsored by the Better Software Conference EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile Plan-Driven Development * Managing Projects Teams * Testing QA Security * Process Improvement Measurement * http://www.sqe.com/bsce5sf ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci mosflm.info,1.1,1.2
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv13823 Modified Files: mosflm.info Log Message: mosflm default display version, program version update, 10.4 unst sci Index: mosflm.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/mosflm.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- mosflm.info 15 Aug 2005 16:40:11 - 1.1 +++ mosflm.info 30 Aug 2005 20:17:26 - 1.2 @@ -7,9 +7,9 @@ SourceDirectory: mosflm625 # NoSourceDirectory: true Source-MD5: 08c0730fa588d71bed219a7763322672 -Depends: x11, ccp4, ccp4lib, libjpeg-shlibs, ccp4lib-shlibs +Depends: x11, ccp4, ccp4lib, libjpeg-shlibs, ccp4lib-shlibs, libgettext3-shlibs #Replaces: mosflm -BuildDepends: g77, ccp4, x11, libjpeg, ccp4lib-shlibs, ccp4lib +BuildDepends: g77, ccp4, x11, libjpeg, ccp4lib-shlibs, ccp4lib, libgettext3-shlibs PatchScript: #!/bin/zsh -f print $PWD @@ -36,7 +36,7 @@ cp ipmosflm-* %i/bin/ipmosflm cp ipmosflm-* %i/bin/mosflm -Description: X-ray data processing, default display version +Description: X-ray data processing, large display DescDetail: Mosflm is a program for integrating single crystal diffraction data from area detectors. It is assumed that the experiment was conducted @@ -55,6 +55,8 @@ Cambridge CB2 2QH UK E-mail: harry AT mrc-lmb DOT cam DOT ac DOT uk + +Homepage: http://www.mrc-lmb.cam.ac.uk/harry/frames/ License: GPL --- SF.Net email is Sponsored by the Better Software Conference EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile Plan-Driven Development * Managing Projects Teams * Testing QA Security * Process Improvement Measurement * http://www.sqe.com/bsce5sf ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci mosflm-small.info,1.2,1.3
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv14211 Modified Files: mosflm-small.info Log Message: mosflm small display, added missing dependency, 10.4 unst sci Index: mosflm-small.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/mosflm-small.info,v retrieving revision 1.2 retrieving revision 1.3 diff -u -d -r1.2 -r1.3 --- mosflm-small.info 15 Aug 2005 16:39:15 - 1.2 +++ mosflm-small.info 30 Aug 2005 20:18:34 - 1.3 @@ -7,9 +7,9 @@ SourceDirectory: mosflm625 # NoSourceDirectory: true Source-MD5: 08c0730fa588d71bed219a7763322672 -Depends: x11, ccp4, ccp4lib, libjpeg-shlibs, ccp4lib-shlibs +Depends: x11, ccp4, ccp4lib, libjpeg-shlibs, ccp4lib-shlibs, libgettext3-shlibs #Replaces: mosflm -BuildDepends: g77, ccp4, x11, libjpeg, ccp4lib-shlibs, ccp4lib +BuildDepends: g77, ccp4, x11, libjpeg, ccp4lib-shlibs, ccp4lib, libgettext3-shlibs PatchScript: #!/bin/zsh -f print $PWD --- SF.Net email is Sponsored by the Better Software Conference EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile Plan-Driven Development * Managing Projects Teams * Testing QA Security * Process Improvement Measurement * http://www.sqe.com/bsce5sf ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/shells zsh.info,1.2,1.3
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv10746 Modified Files: zsh.info Log Message: fixed broken zsh for 10.4 unstable (shells) per instructions from Daniel Macks Index: zsh.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells/zsh.info,v retrieving revision 1.2 retrieving revision 1.3 diff -u -d -r1.2 -r1.3 --- zsh.info2 Jul 2005 10:41:44 - 1.2 +++ zsh.info13 Sep 2005 04:40:06 - 1.3 @@ -1,6 +1,6 @@ Package: zsh Version: 4.2.5 -Revision: 11 +Revision: 22 Depends: libiconv, pcre-shlibs, libncurses5-shlibs BuildDepends: libiconv-dev, pcre, pcre-bin, libncurses5 CustomMirror: @@ -34,7 +34,11 @@ ./configure %c perl -pi.bak -e s;-ldl -ltinfo -lm -lc;-L%p/lib -lpcre -L%p/lib -lncurses -L%p/lib -liconv -ltinfo -ldl -lm -lc; Makefile perl -pi.bak -e s;-bundle -flat_namespace -undefined suppress;-bundle -twolevel_namespace -undefined dynamic_lookup; Makefile - make +#perl -pi.bak -e s;#define HAVE_POLL 1;#define HAVE_POLL 0; config.h +#perl -pi.bak -e s;#define HAVE_POLL_H 1;#define HAVE_POLL_H 0; config.h +cp config.h config.h.bak +grep -v HAVE_POLL config.h.bak config.h +make InstallScript: mkdir -p %i/etc/zsh @@ -47,10 +51,13 @@ Zsh is a shell designed for interactive use, although it is also a powerful scripting language. Many of the useful features of bash, ksh, and tcsh were incorporated into zsh; many original -features were added. +features were added. Its syntax is that of an augmented ksh. It is recommended that you read http://zsh.sunsite.dk/Intro/intro_toc.html before installing this shell. +You might also consider installing the zsh-templates package +and the zsh-helpfiles package. +http://babyurl.com/2SR9Ue DescUsage: All config files should be kept in %p/etc/zsh. @@ -61,10 +68,16 @@ This shell is NOT preconfigured. Sample configure scripts can be found in your %p/share/doc/zsh directory You may manually move those sample files to -%p/etc/zsh or alter them to your likings! +%p/etc/zsh or alter them to your liking! + +Alternatively, the fink zsh-templates package provides a +fully configured set of enhanced configuration scripts +and functions, many specifically designed to facilitate +interaction with the OS X environment. Documentation is included by default, please read -it carefully. +it carefully. In addition, the zsh-helpfiles package +provides additional documentation. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- ATTENTION ATTENTION @@ -73,6 +86,8 @@ DescPort: Getting it from a specific sourceforge mirror until I add Custom mirrors. Their mirrors seem to be pretty messed up. +The 10.4 specific patch is required for the shell to +function. License: GPL Maintainer: Darian Lanx [EMAIL PROTECTED] --- SF.Net email is Sponsored by the Better Software Conference EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile Plan-Driven Development * Managing Projects Teams * Testing QA Security * Process Improvement Measurement * http://www.sqe.com/bsce5sf ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/shells zsh-templates.info,1.8,1.9
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv10967 Modified Files: zsh-templates.info Log Message: latest version of zsh configuration scripts for shells/10.4 unstable Index: zsh-templates.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells/zsh-templates.info,v retrieving revision 1.8 retrieving revision 1.9 diff -u -d -r1.8 -r1.9 --- zsh-templates.info 13 Aug 2005 21:40:50 - 1.8 +++ zsh-templates.info 13 Sep 2005 04:41:48 - 1.9 @@ -1,8 +1,8 @@ Package: zsh-templates -Version: 0.9.4 +Version: 0.9.5 Revision: 1 Source: http://chemistry.ucsc.edu/~wgscott/mystuff/%n-%v.tgz -Source-MD5: cec3327a3cc6a137c2b767482605f341 +Source-MD5: b79aa97a8c2a47f68b9ad5f22c5bf372 Depends: macosx, zsh (= 4.2.1-13) License: GPL Maintainer: W. G. Scott [EMAIL PROTECTED] --- SF.Net email is Sponsored by the Better Software Conference EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile Plan-Driven Development * Managing Projects Teams * Testing QA Security * Process Improvement Measurement * http://www.sqe.com/bsce5sf ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.3/unstable/main/finkinfo/shells zsh.info,1.13,1.14
Update of /cvsroot/fink/dists/10.3/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv12692 Modified Files: zsh.info Log Message: fixed (possibly) broken zsh for 10.3 unstable (shells) per instructions from Daniel Macks Index: zsh.info === RCS file: /cvsroot/fink/dists/10.3/unstable/main/finkinfo/shells/zsh.info,v retrieving revision 1.13 retrieving revision 1.14 diff -u -d -r1.13 -r1.14 --- zsh.info3 May 2005 09:32:42 - 1.13 +++ zsh.info13 Sep 2005 04:50:50 - 1.14 @@ -1,6 +1,6 @@ Package: zsh Version: 4.2.5 -Revision: 11 +Revision: 12 Depends: libiconv, pcre-shlibs, libncurses5-shlibs BuildDepends: libiconv-dev, pcre, pcre-bin, libncurses5 CustomMirror: @@ -34,8 +34,6 @@ ./configure %c perl -pi.bak -e s;-ldl -ltinfo -lm -lc;-L%p/lib -lpcre -L%p/lib -lncurses -L%p/lib -liconv -ltinfo -ldl -lm -lc; Makefile perl -pi.bak -e s;-bundle -flat_namespace -undefined suppress;-bundle -twolevel_namespace -undefined dynamic_lookup; Makefile -perl -pi.bak -e s;#define HAVE_POLL 1;#define HAVE_POLL 0; config.h -perl -pi.bak -e s;#define HAVE_POLL_H 1;#define HAVE_POLL_H 0; config.h make InstallScript: --- SF.Net email is Sponsored by the Better Software Conference EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile Plan-Driven Development * Managing Projects Teams * Testing QA Security * Process Improvement Measurement * http://www.sqe.com/bsce5sf ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/shells zsh-helpfiles.info,NONE,1.1
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv15299 Added Files: zsh-helpfiles.info Log Message: zsh-helpfiles adds an optional run-help function to augment zsh documentation --- NEW FILE: zsh-helpfiles.info --- Package: zsh-helpfiles Version: 4.2.5 Revision: 1 Depends: zsh (= 4.2.5) BuildDepends: zsh (= 4.2.5) CustomMirror: Master: ftp://ftp.zsh.org/pub/ eur: ftp://ftp.lysator.liu.se/pub/unix/zsh/ eur-NL: ftp://ftp.demon.nl/pub/mirrors/zsh/ eur-DE: ftp://ftp.demon.nl/pub/mirrors/zsh/ aus-AU: ftp://ftp.zsh.org/zsh/ eur-DK: ftp://sunsite.dk/pub/unix/shells/zsh/ eur-FI: ftp://sunsite.dk/pub/unix/shells/zsh/ eur-FR: ftp://nephtys.lip6.fr/pub/unix/shells/zsh/ eur-HU: ftp://ftp.cs.elte.hu/pub/zsh/ eur-IL: ftp://ftp.math.technion.ac.il/pub/zsh/ asi-JP: ftp://ftp.math.technion.ac.il/pub/zsh/ asi-JP: ftp://ftp.ayamura.org/pub/zsh/ asi-KR: ftp://ftp.ayamura.org/pub/zsh/ eur-PL: ftp://sunsite.icm.edu.pl/pub/unix/shells/zsh/ eur-RO: ftp://ftp.roedu.net/pub/mirrors/ftp.zsh.org/pub/zsh/ eur-RO: ftp://ftp.kappa.ro/pub/mirrors/ftp.zsh.org/pub/zsh/ eur-SE: ftp://ftp.lysator.liu.se/pub/unix/zsh/ eur-UK: ftp://ftp.lysator.liu.se/pub/unix/zsh/ nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/zsh-%v.tar.bz2 Source-MD5: e2060f743dcdf3b383e80e862a6548fe Source2: http://www.chemistry.ucsc.edu/~wgscott/mystuff/zsh/Library/init/zsh/local-functions/run-help Source2-MD5: 371638ce4c255993ea9c528981b3d113 CompileScript: #!/bin/zsh -f # the perl magic token breaks Util/helpfiles perl -pi.bak -e 's|/usr/local/bin/perl -- -\*-perl-\*-|/usr/bin/perl |g' Util/helpfiles mkdir temp cd temp command man -M %p/share/man zshall | colcrt - | ../Util/helpfiles InstallScript: #!/bin/zsh -f mkdir -p %i/share/zsh/zsh_help cp temp/* %i/share/zsh/zsh_help/. mkdir -p %i/share/zsh/site-functions cp ../run-help %i/share/zsh/site-functions/. # mkdir -p %i/etc/profile.d # cat | %i/etc/profile.d/zsh-helpfiles.sh eof-1 # if [[ -n \$ZSH_VERSION ]]; then if [[ -z \$HELPDIR ]]; then HELPDIR=%p/share/zsh/zsh_help else HELPDIR=%p/share/zsh/zsh_help:\$HELPDIR fi export -TU HELPDIR helpdir typeset -U helpdir #keeps helpdir and HELPDIR trimmed #The directory containing run-help must be prepended to the \$FPATH FPATH=%p/share/zsh/site-functions:\$FPATH export FPATH typeset -U fpath # keeps fpath and FPATH trimmed autoload -U run-help fi # eof-1 # echo # This file is an empty place-holder. | %i/etc/profile.d/zsh-helpfiles.csh # chmod a+x %i/etc/profile.d/zsh-helpfiles.*sh Description: Z Shell help files DescDetail: The helpfiles utility, found in the Util directory of the distribution, is a Perl program that can be used to process the zsh manual to produce a separate help file for each shell builtin and for many other shell features as well. The autoloadable run-help function, found in Func- tions/Misc, searches for these helpfiles and performs several other tests to produce the most complete help possible for the command. This package installs a corrected version of run-help that will not clobber the $HELPDIR variable that at least one other (unrelated) fink package declares. DescUsage: Fink automatically issues the command autoload -U run-help upon z-shell startup. Then, for example, issuing run-help zargs will enable you to view a formatted helpfile extracted from the zsh man pages for the zsh function zargs. The environment variable $HELPDIR should point to /sw/share/zsh/zsh_help; this too is set up automatically by fink. License: GPL Maintainer: W. Scott [EMAIL PROTECTED] Homepage: http://zsh.sunsite.dk/ --- SF.Net email is Sponsored by the Better Software Conference EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile Plan-Driven Development * Managing Projects Teams * Testing QA Security * Process Improvement Measurement * http://www.sqe.com/bsce5sf ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci pymol-py.info,1.4,1.5 pymol-py.patch,1.1,1.2
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv14998 Modified Files: pymol-py.info pymol-py.patch Log Message: pymol-pyX.Y version upgrade Index: pymol-py.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.info,v retrieving revision 1.4 retrieving revision 1.5 diff -u -d -r1.4 -r1.5 --- pymol-py.info 25 Jan 2006 04:21:44 - 1.4 +++ pymol-py.info 25 Feb 2006 16:59:12 - 1.5 @@ -1,16 +1,14 @@ Info2: Package: pymol-py%type_pkg[python] -Version: 0.98 -Revision: 1006 +Version: 0.99 +Revision: 1001 Maintainer: Jack Howarth [EMAIL PROTECTED] Type: python (2.3 2.4) -Source: mirror:custom:pymol/pymol-0_98-src.tgz +Source: mirror:custom:pymol/pymol-0_99rc1-src.tgz CustomMirror: Primary: http://easynews.dl.sourceforge.net/sourceforge -Source-MD5: 096cc1d06fa36eb1c8ad30560d06b81e -Source2: http://www-personal.umich.edu/~mlerner/PyMOL/apbs_tools.py -Source2-MD5: f9f97d1b5237609664febfff85cc395f +Source-MD5: 1dfb4b943e6a8dba06f4446b8a185bae SourceDirectory: pymol-%v Depends: python%type_pkg[python], libpng3-shlibs, numeric-py%type_pkg[python], tcltk, pmw-py%type_pkg[python] (= 1.2-1), freeglut-shlibs, blt-shlibs BuildDepends: libpng3, freeglut, db43-ssl (= 4.3.29-1001)|db43 (= 4.3.29-1001), readline (= 4.3-1028), gdbm3, expat, tcltk-dev, blt @@ -19,7 +17,6 @@ PatchScript: sed 's|@FINKPREFIX@|%p|g' %a/pymol-py.patch | sed 's|python2.X|python%type_raw[python]|g' | sed 's|pymol-py2X|pymol-py%type_pkg[python]|g' | patch -p1 CompileScript: (cd setup; cp Rules.osx-fink %b/Rules.make) -cp ../apbs_tools.py modules/pmg_tk/startup/. make InstallScript: Index: pymol-py.patch === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.patch,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- pymol-py.patch 20 Jan 2006 20:30:40 - 1.1 +++ pymol-py.patch 25 Feb 2006 16:59:12 - 1.2 @@ -73,22 +73,23 @@ #--- What are we trying to build? DEST = -o modules/pymol/_cmd.so #--- Gcc Options for Linux -diff -uNr pymol-0.95.org/setup/pymol.com.osx-fink pymol-0.95/setup/pymol.com.osx-fink pymol-0.95.org/setup/pymol.com.osx-finkSat Apr 26 20:26:19 2003 -+++ pymol-0.95/setup/pymol.com.osx-finkMon Apr 5 18:12:11 2004 +diff -uNr pymol-0.99beta33/setup/pymol.com.osx-fink.orig pymol-0.99beta33/setup/pymol.com.osx-fink +--- pymol-0.99beta33/setup/pymol.com.osx-fink.orig 2005-11-19 12:46:39.0 -0500 pymol-0.99beta33/setup/pymol.com.osx-fink 2006-01-09 20:24:01.0 -0500 @@ -5,7 +5,7 @@ # == # Set PYMOL_PATH to point at the correct location on your system # --setenv PYMOL_PATH /Users/delwarl/pymol -+setenv PYMOL_PATH @FINKPREFIX@/lib/pymol-py2X +-PYMOL_PATH=/Users/delwarl/pymol [EMAIL PROTECTED]@/lib/pymol-py2X + export PYMOL_PATH # # == - # (no changes usually required below here) -@@ -19,5 +19,5 @@ - endif - # +@@ -20,6 +20,6 @@ + fi + export PYTHONPATH # --/sw/bin/python $PYMOL_PATH/modules/pymol/__init__.py $* [EMAIL PROTECTED]@/bin/python2.X $PYMOL_PATH/modules/pymol/__init__.py $* +-/sw/bin/python $PYMOL_PATH/modules/pymol/__init__.py $@ [EMAIL PROTECTED]@/bin/python2.X $PYMOL_PATH/modules/pymol/__init__.py $@ + --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci ccp4-onlylibs-dev.info,1.5,1.6
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv15709 Modified Files: ccp4-onlylibs-dev.info Log Message: ccp4-onlylibs-dev revision to remove extraneous download Index: ccp4-onlylibs-dev.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4-onlylibs-dev.info,v retrieving revision 1.5 retrieving revision 1.6 diff -u -d -r1.5 -r1.6 --- ccp4-onlylibs-dev.info 24 Feb 2006 03:41:14 - 1.5 +++ ccp4-onlylibs-dev.info 27 Feb 2006 22:50:15 - 1.6 @@ -1,7 +1,7 @@ Package: ccp4-onlylibs-dev # Use version numbering to sync with the current CCP4 release: -Version: 5.99.5 -Revision: 1004 +Version: 6.0 +Revision: 1005 GCC: 4.0 #Source: ftp://ftp.ccp4.ac.uk/prerelease/%n.tar.gz #Source-MD5: cf085751833aecc7ccef9e67de7e9fcc @@ -11,11 +11,11 @@ SourceDirectory: %n Source2: http://chemistry.ucsc.edu/~wgscott/xtal/%n/%n-extras-0.1.tgz Source2-MD5: ea307964e3786bef0868ea560471 -Source3: http://chemistry.ucsc.edu/~wgscott/xtal/clipper_%v-src.tgz -Source3-MD5: 1c7a91218a4a27af1c2506f39df4692a +#Source3: http://chemistry.ucsc.edu/~wgscott/xtal/clipper_%v-src.tgz +#Source3-MD5: 1c7a91218a4a27af1c2506f39df4692a Depends: BuildDepends: g77 (= 3.4.0-2), f2c, fort77 -BuildDependsOnly: true +BuildDependsOnly: false NoSetCPPFLAGS: true NoSetLDFLAGS: true ### @@ -46,7 +46,7 @@ CompileScript: #!/bin/zsh -ef umask 0022 -cp -R ../src/* lib/clipper/src/. +#cp -R ../src/* lib/clipper/src/. export TEMPXTAL=$PWD:h source include/ccp4.setup-zsh export DYLD_LIBRARY_PATH=$CLIB @@ -92,19 +92,45 @@ ranlib %i/share/xtal/%n-%v/lib/**/*.a ### -SplitOff: +SplitOff: +Package: clipper +Depends: clipper-bin, ccp4-onlylibs-dev +BuildDependsOnly: true +Description: Working Clipper static libs and binaries +DescDetail: +Placeholder to install working static clipper libraries and binary +executables for packages that require both to be present for linking. + +The aim of the project is to produce a set of object-oriented libraries +for the organisation of crystallographic data and the performance of +crystallographic computation. The libraries are designed as a framework +for new crystallographic software, which will allow the full power of +modern programming techniques to be exploited by the developer. This +will lead to greater functionality from simpler code which will be easier +to develop and debug. NOTE: This is a static version of clipper required +to build COOT and various clipper binary executables like CPIRATE with the +g++-4.0 compiler. + + +### +SplitOff2: Package: clipper-bin -BuildDependsOnly: True -Conflicts: ccp4-dev -Replaces: ccp4-dev +BuildDependsOnly: false Files: bin/* -Description: Clipper executables including cpirate +Description: Working Clipper executables including cpirate +DescDetail: +The package clipper-bin installs statically-linked versions of the following +binary executable files that are broken in the ccp4-clipper-bin package in +the 10.4 branch of fink: cecalc cfft chltofom cinvfft clipper-config +cmakereference cpatterson cphasecombine cphasematch cpirate csfcalc csigmaa +superpose. These executables will be installed in %p/bin. + ### ### -Description: CCP4 Libraries +Description: CCP4 and CLIPPER static libraries DescDetail: This package installs CCP4 libraries, only. If you need all of CCP4, install the self-contained CCP4 package instead of, or @@ -122,12 +148,12 @@ error that appears in cpirate and coot fft calculations. CCP4lib files will be installed under -%p/share/xtal/ccp4-onlylibs-dev-5.99.5. This is essentially +%p/share/xtal/ccp4-onlylibs-dev-6.0. This is essentially identical in content to the corresponding files in CCP4 6.0. Programs requiring these libraries to build or run need to source the appropriate -%p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup +%p/share/xtal/ccp4-onlylibs-dev-6.0/include/ccp4.setup file for the shell, as is done in the coot.info file. Unless you are building something external to fink, there is no need to source that file. --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___
dists/10.4/unstable/main/finkinfo/sci coot.info,1.4,1.5
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv17151 Modified Files: coot.info Log Message: coot revision upgrade to sync dependencies Index: coot.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.4 retrieving revision 1.5 diff -u -d -r1.4 -r1.5 --- coot.info 24 Feb 2006 03:46:16 - 1.4 +++ coot.info 27 Feb 2006 22:52:57 - 1.5 @@ -1,6 +1,6 @@ Package:coot Version: 0.1.0-pre-3 -Revision: 1005 +Revision: 1007 GCC: 4.0 #Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz @@ -11,7 +11,7 @@ Source3: http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz Source3-MD5: c09bb6b5524901cb0fde14589546224e ### -BuildDepends: ccp4-onlylibs-dev (= 5.99.5-1004), glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24, python +BuildDepends: ccp4-onlylibs-dev (= 6.0-1005), glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24, python # Depends: guile16-shlibs, gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (= 2.3.16-2), coot-shlibs (= %v-%r), python24, python # @@ -39,7 +39,7 @@ ### CompileScript: #!/bin/zsh -ef -source %p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup-zsh +source %p/share/xtal/ccp4-onlylibs-dev-6.0/include/ccp4.setup-zsh export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH export SED=/usr/bin/sed export PYTHONPATH= @@ -57,7 +57,7 @@ ### InstallScript: #!/bin/zsh -ef -source %p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup-zsh +source %p/share/xtal/ccp4-onlylibs-dev-6.0/include/ccp4.setup-zsh export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH export PYTHONPATH= export SED=/usr/bin/sed --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci mosflm.info,1.3,1.4 mosflm-small.info,1.4,1.5
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv19104 Modified Files: mosflm.info mosflm-small.info Log Message: mosflm revision bump for dependency on new ccp4-dev Index: mosflm-small.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/mosflm-small.info,v retrieving revision 1.4 retrieving revision 1.5 diff -u -d -r1.4 -r1.5 --- mosflm-small.info 23 Feb 2006 19:44:21 - 1.4 +++ mosflm-small.info 27 Feb 2006 22:56:21 - 1.5 @@ -4,8 +4,8 @@ Source: http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver625/build-it-yourself/mosflm625.tgz SourceDirectory: mosflm625 Source-MD5: 08c0730fa588d71bed219a7763322672 -Depends: x11, ccp4 (= 6.0-1001), libjpeg-shlibs, libgettext3-shlibs -BuildDepends: g77, ccp4 (= 6.0-1001), x11, libjpeg, libgettext3-shlibs +Depends: x11, ccp4 (= 6.0-1002), libjpeg-shlibs, libgettext3-shlibs +BuildDepends: g77, ccp4 (= 6.0-1002), x11, libjpeg, libgettext3-shlibs, ccp4-dev (= 6.0-1002) PatchScript: #!/bin/zsh -ef perl -pi.bak -e 's|-lcc_dynamic||g' setup Index: mosflm.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/mosflm.info,v retrieving revision 1.3 retrieving revision 1.4 diff -u -d -r1.3 -r1.4 --- mosflm.info 23 Feb 2006 19:44:21 - 1.3 +++ mosflm.info 27 Feb 2006 22:56:21 - 1.4 @@ -4,8 +4,8 @@ Source: http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver625/build-it-yourself/mosflm625.tgz SourceDirectory: mosflm625 Source-MD5: 08c0730fa588d71bed219a7763322672 -Depends: x11, ccp4 (= 6.0-1001), libjpeg-shlibs, libgettext3-shlibs -BuildDepends: g77, ccp4 (= 6.0-1001), x11, libjpeg, libgettext3-shlibs +Depends: x11, ccp4 (= 6.0-1002), libjpeg-shlibs, libgettext3-shlibs +BuildDepends: g77, ccp4 (= 6.0-1002), x11, libjpeg, libgettext3-shlibs, ccp4-dev (= 6.0-1002) PatchScript: #!/bin/zsh -ef print $PWD --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci ccp4.info,1.4,1.5 ccp4.patch,1.3,1.4
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv18046 Modified Files: ccp4.info ccp4.patch Log Message: ccp4 revision to modularize non-essential components Index: ccp4.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4.info,v retrieving revision 1.4 retrieving revision 1.5 diff -u -d -r1.4 -r1.5 --- ccp4.info 23 Feb 2006 19:37:21 - 1.4 +++ ccp4.info 27 Feb 2006 22:54:32 - 1.5 @@ -1,6 +1,6 @@ Package: ccp4 Version: 6.0 -Revision: 1001 +Revision: 1002 GCC: 4 Source: ftp://ftp.%n.ac.uk/%n/%v.0/packed/%n-%v.0-core-src.tar.gz Source2: ftp://ftp.%n.ac.uk/%n/%v.0/packed/phaser-1.3.2-cctbx-src.tar.gz @@ -9,7 +9,7 @@ SourceDirectory: %n-%v Source3: http://chemistry.ucsc.edu/~wgscott/xtal/xtalfink/XCCPJiffy-custom.gz Source3-MD5: 21568dd2475505929573a3fd452c538f -Depends: x11, tcltk, blt, ccp4-shlibs (= %v-%r), fftw-shlibs | fftw-mpi-shlibs +Depends: x11, tcltk, blt, ccp4-shlibs (= %v-%r), fftw-shlibs | fftw-mpi-shlibs, clipper-bin BuildDepends: g77 (= 3.4.0-2), f2c, fort77, tcltk-dev, fftw | fftw-mpi Replaces: mosflm (= 6.2.3-2), mosflm-small (= 6.2.3-2), refmac (= 5.1999-3), ccp4lib, ccp4lib-shlibs, ccp4 (= 5.99.5-) Conflicts: ccp4lib, ccp4lib-shlibs, ccp4 (= 5.99.5- ) @@ -119,7 +119,7 @@ mkdir -p %i/lib cp -R lib %i/lib/%n-%v mkdir -p %i/bin - cp -R bin/clipper-config %i/bin/clipper-config +# mkdir -p %i/share/xtal/%n-%v/help mkdir -p %i/share/man/man1 # set up man pages in a fink-compliant manner @@ -162,13 +162,12 @@ ranlib %i/lib/%n-%v/**/*.a # + PostInstScript: -# This chances the paths for the shell and python scripts to those of the -# final install point rather than the build or debian root directory. -# cd %p/lib/%n-%v/cctbx/cctbx_build -# /System/Library/Frameworks/Python.framework/Versions/Current/bin/python ../cctbx_sources/libtbx/configure.py mmtbx +# Make the user read the license conditions more %p/share/xtal/%n-%v/conditions.txt + SplitOff: Package: %N-shlibs Depends: fftw-shlibs | fftw-mpi-shlibs @@ -176,6 +175,58 @@ Files: lib/ccp4-6.0/libccif.dylib lib/ccp4-6.0/libccp4c.dylib +lib/ccp4-6.0/libjwc_c.0.1.1.dylib +lib/ccp4-6.0/libjwc_c.0.dylib +lib/ccp4-6.0/libjwc_c.dylib +lib/ccp4-6.0/libssm.0.0.0.dylib +lib/ccp4-6.0/libssm.0.dylib +lib/ccp4-6.0/libssm.dylib +lib/ccp4-6.0/libxdl_view.2.0.0.dylib +lib/ccp4-6.0/libxdl_view.2.dylib +lib/ccp4-6.0/libxdl_view.dylib +lib/ccp4-6.0/libxdl_viewextra.0.0.0.dylib +lib/ccp4-6.0/libxdl_viewextra.0.dylib +lib/ccp4-6.0/libxdl_viewextra.dylib + +#lib/ccp4-6.0/libmmdb.dylib +Shlibs: + %p/lib/ccp4-6.0/libccif.dylib 0.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libccp4c.dylib 0.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libjwc_c.0.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libjwc_c.0.1.1.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libjwc_c.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libxdl_view.2.dylib 3.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libxdl_view.2.0.0.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libxdl_view.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libxdl_viewextra.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libxdl_viewextra.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libxdl_viewextra.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libssm.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libssm.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libssm.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) + + DocFiles: CHANGES COPYING INSTALL INSTALL.html INSTALL.ps README PROBLEMS academic_software_licence.pdf +Description: Essential dynamic libraries for CCP4 +DescDetail: +The package ccp4-shlibs contains all of the essential (non-clipper) libraries +for ccp4. It excludes the clipper dynamic libraries, which may be buggy. + + +# %p/lib/ccp4-6.0/libmmdb.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) +# + +SplitOff2: +Package: %N-clipper-shlibs +Description: Currently buggy clipper dynamic libraries +DescDetail: +CCP4-clipper-shlibs contains all of the non-essential clipper dynamic +libraries that are built by ccp4. There appear to be problems with this +specific to g++-4.0.1. Until these are addressed, use the static clipper +libraries in fink's ccp4-onlylibs-dev package instead + +Depends: fftw-shlibs | fftw-mpi-shlibs +Replaces: ccp4lib, ccp4lib-shlibs + Files: lib/ccp4-6.0/libclipper-ccp4.0.0.0.dylib lib/ccp4-6.0/libclipper-ccp4.0.dylib lib/ccp4-6.0/libclipper-ccp4.dylib @@ -197,72
dists/10.4/unstable/main/finkinfo/sci bundle-ccp4.info,NONE,1.1
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv19777 Added Files: bundle-ccp4.info Log Message: bundle to install all working components of ccp4 and affiliated packages --- NEW FILE: bundle-ccp4.info --- Package: bundle-ccp4 Version: 6.0 Revision: 1 Description: Complete CCP4 crystallographic program set Maintainer: W. G. Scott [EMAIL PROTECTED] Homepage: http://www.ccp4.ac.uk/ Type: bundle Depends: ccp4 (= 6.0-1002), cctbx (= 51021-1001), cgraph (= 2.04-1), chooch, clipper-bin (= 6.0-1005), coot (= 0.1.0-pre-3-1006), mosflm (= 6.2.5-1006) | mosflm-small (= 6.2.5-1006) DescDetail: Install a fully functional, working CCP4 distribution with all options. Bundle package to install everything available from the CCP4 downloads page, although more recent versions of cctbx, coot and mosflm are provided to keep this as current as possible. The versioning number corresponds to that of CCP4, and revisions will occur whenever any of the subsidiary packages has been updated. Therefore, simply issue fink install bundle-ccp4 to keep everything up to date. Replaces: mosflm (= 6.2.5-1005), mosflm-small (= 6.2.5-1005), refmac (= 5.2), ccp4lib, ccp4lib-shlibs, ccp4 (= 6.0-1001), ccp4-shlibs (= 6.0-1001), clipper (= 6.0-1), mmdb, mccp4, ssmlib --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci coot.info,1.14,1.15
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv20424 Modified Files: coot.info Log Message: coot revision number change in 10.4-transitional to distinguish from 10.3 Index: coot.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.14 retrieving revision 1.15 diff -u -d -r1.14 -r1.15 --- coot.info 24 Feb 2006 08:22:24 - 1.14 +++ coot.info 28 Feb 2006 17:18:32 - 1.15 @@ -1,6 +1,6 @@ Package:coot Version: 0.1.0-pre-3 -Revision: 5 +Revision: 105 GCC: 3.3 #Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.3/unstable/main/finkinfo/sci coot.info,1.36,1.37
Update of /cvsroot/fink/dists/10.3/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv15635 Modified Files: coot.info Log Message: coot revision to fix compile error Index: coot.info === RCS file: /cvsroot/fink/dists/10.3/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.36 retrieving revision 1.37 diff -u -d -r1.36 -r1.37 --- coot.info 24 Feb 2006 18:06:33 - 1.36 +++ coot.info 28 Feb 2006 17:11:34 - 1.37 @@ -1,6 +1,6 @@ Package:coot Version: 0.1.0-pre-3 -Revision: 5 +Revision: 6 GCC: 3.3 #Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz @@ -45,7 +45,6 @@ export PYTHONPATH= FLIBS=-L%p/lib \ CPPFLAGS=-I$CCP4/lib/clipper/clipper/mmdbold \ -#LDFLAGS=-L$CLIB -L/usr/lib -lSystemStubs -flat_namespace -L%p/lib \ LDFLAGS=-L$CLIB -L/usr/lib -flat_namespace -L%p/lib \ FC=%p/bin/g77 \ CXX=/usr/bin/g++-3.3 \ --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/stable/main/finkinfo/shells zsh.info,NONE,1.1
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv20756 Added Files: zsh.info Log Message: zsh version 4.2.6 promoted to 10.4 stable/shells --- NEW FILE: zsh.info --- Package: zsh Version: 4.2.6 Revision: 1001 Depends: libiconv, pcre-shlibs, libncurses5-shlibs (= 5.4-20041023-1006) BuildDepends: libiconv-dev, pcre, pcre-bin, libncurses5 (= 5.4-20041023-1006) CustomMirror: Master: ftp://ftp.zsh.org/pub/ eur: ftp://ftp.lysator.liu.se/pub/unix/zsh/ eur-NL: ftp://ftp.demon.nl/pub/mirrors/zsh/ eur-DE: ftp://ftp.demon.nl/pub/mirrors/zsh/ aus-AU: ftp://ftp.zsh.org/zsh/ eur-DK: ftp://sunsite.dk/pub/unix/shells/zsh/ eur-FI: ftp://sunsite.dk/pub/unix/shells/zsh/ eur-FR: ftp://nephtys.lip6.fr/pub/unix/shells/zsh/ eur-HU: ftp://ftp.cs.elte.hu/pub/zsh/ eur-IL: ftp://ftp.math.technion.ac.il/pub/zsh/ asi-JP: ftp://ftp.math.technion.ac.il/pub/zsh/ asi-JP: ftp://ftp.ayamura.org/pub/zsh/ asi-KR: ftp://ftp.ayamura.org/pub/zsh/ eur-PL: ftp://sunsite.icm.edu.pl/pub/unix/shells/zsh/ eur-RO: ftp://ftp.roedu.net/pub/mirrors/ftp.zsh.org/pub/zsh/ eur-RO: ftp://ftp.kappa.ro/pub/mirrors/ftp.zsh.org/pub/zsh/ eur-SE: ftp://ftp.lysator.liu.se/pub/unix/zsh/ eur-UK: ftp://ftp.lysator.liu.se/pub/unix/zsh/ nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/%n-%v.tar.bz2 Source-MD5: 2cefebf742c190cbc611baded825db64 Source2: mirror:custom:%n-%v-doc.tar.bz2 Source2-MD5: 3ca3b7c199db6eb942f2a296e3fad270 ConfigureParams: --mandir=%p/share/man --infodir=%p/share/info --enable-etcdir=%p/etc/%n --enable-maildir-support --enable-pcre --enable-zsh-secure-free --enable-fndir=%p/share/%n --enable-function-subdirs --with-curses-terminfo --with-tcsetpgrp CompileScript: perl -pi.bak -e s;DL_EXT=so;DL_EXT=dylib;g configure ./configure %c perl -pi.bak -e s;-ldl -ltinfo -lm -lc;-L%p/lib -lpcre -L%p/lib -lncurses -L%p/lib -liconv -ltinfo -ldl -lm -lc; Makefile perl -pi.bak -e s;-bundle -flat_namespace -undefined suppress;-bundle -twolevel_namespace -undefined dynamic_lookup; Makefile #cp config.h config.h.bak #grep -v HAVE_POLL config.h.bak config.h make InstallScript: mkdir -p %i/etc/zsh make install DESTDIR=%d DocFiles: Doc/zsh.dvi Doc/*.html StartupFiles/* ChangeLog* INSTALL LICENCE META-FAQ README Description: The Z Shell DescDetail: To make the Fink zsh your default user shell, do the following: 1. Add the line /sw/bin/zsh to the file /etc/shells 2. Execute the following command: chsh -s /sw/bin/zsh 3. Open a new terminal session. . Zsh is a shell designed for interactive use, although it is also a powerful scripting language. Many of the useful features of bash, ksh, and tcsh were incorporated into zsh; many original features were added. Its syntax is that of an augmented ksh. It is recommended that you read http://zsh.sunsite.dk/Intro/intro_toc.html after installing this shell. You might also consider installing the zsh-templates package and the zsh-helpfiles package. DescUsage: All config files should be kept in %p/etc/zsh. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- ATTENTION ATTENTION -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- This shell is NOT preconfigured. Sample configure scripts can be found in your %p/share/doc/zsh directory You may manually move those sample files to %p/etc/zsh or alter them to your liking! Alternatively, the fink zsh-templates package provides a fully configured set of enhanced configuration scripts and functions, many specifically designed to facilitate interaction with the OS X environment. Documentation is included by default, please read it carefully. In addition, the zsh-helpfiles package provides additional documentation. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- ATTENTION ATTENTION -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- DescPort: Recent updates by W. G. Scott [EMAIL PROTECTED] Please complain to him, not dmalloc! License: GPL Maintainer: Darian Lanx [EMAIL PROTECTED] Homepage: http://zsh.sunsite.dk/ --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/stable/main/finkinfo/shells zsh.info,NONE,1.1
Update of /cvsroot/fink/dists/10.4-transitional/stable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv30722 Added Files: zsh.info Log Message: zsh version 4.2.6 promoted to 10.4-transitional stable/shells --- NEW FILE: zsh.info --- Package: zsh Version: 4.2.6 Revision: 1 Depends: libiconv, pcre-shlibs, libncurses5-shlibs BuildDepends: libiconv-dev, pcre, pcre-bin, libncurses5 CustomMirror: Master: ftp://ftp.zsh.org/pub/ eur: ftp://ftp.lysator.liu.se/pub/unix/zsh/ eur-NL: ftp://ftp.demon.nl/pub/mirrors/zsh/ eur-DE: ftp://ftp.demon.nl/pub/mirrors/zsh/ aus-AU: ftp://ftp.zsh.org/zsh/ eur-DK: ftp://sunsite.dk/pub/unix/shells/zsh/ eur-FI: ftp://sunsite.dk/pub/unix/shells/zsh/ eur-FR: ftp://nephtys.lip6.fr/pub/unix/shells/zsh/ eur-HU: ftp://ftp.cs.elte.hu/pub/zsh/ eur-IL: ftp://ftp.math.technion.ac.il/pub/zsh/ asi-JP: ftp://ftp.math.technion.ac.il/pub/zsh/ asi-JP: ftp://ftp.ayamura.org/pub/zsh/ asi-KR: ftp://ftp.ayamura.org/pub/zsh/ eur-PL: ftp://sunsite.icm.edu.pl/pub/unix/shells/zsh/ eur-RO: ftp://ftp.roedu.net/pub/mirrors/ftp.zsh.org/pub/zsh/ eur-RO: ftp://ftp.kappa.ro/pub/mirrors/ftp.zsh.org/pub/zsh/ eur-SE: ftp://ftp.lysator.liu.se/pub/unix/zsh/ eur-UK: ftp://ftp.lysator.liu.se/pub/unix/zsh/ nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/%n-%v.tar.bz2 Source-MD5: 2cefebf742c190cbc611baded825db64 Source2: mirror:custom:%n-%v-doc.tar.bz2 Source2-MD5: 3ca3b7c199db6eb942f2a296e3fad270 ConfigureParams: --mandir=%p/share/man --infodir=%p/share/info --enable-etcdir=%p/etc/%n --enable-maildir-support --enable-pcre --enable-zsh-secure-free --enable-fndir=%p/share/%n --enable-function-subdirs --with-curses-terminfo --with-tcsetpgrp CompileScript: perl -pi.bak -e s;DL_EXT=so;DL_EXT=dylib;g configure ./configure %c perl -pi.bak -e s;-ldl -ltinfo -lm -lc;-L%p/lib -lpcre -L%p/lib -lncurses -L%p/lib -liconv -ltinfo -ldl -lm -lc; Makefile perl -pi.bak -e s;-bundle -flat_namespace -undefined suppress;-bundle -twolevel_namespace -undefined dynamic_lookup; Makefile #cp config.h config.h.bak #grep -v HAVE_POLL config.h.bak config.h make InstallScript: mkdir -p %i/etc/zsh make install DESTDIR=%d DocFiles: Doc/zsh.dvi Doc/*.html StartupFiles/* ChangeLog* INSTALL LICENCE META-FAQ README Description: The Z Shell DescDetail: To make the Fink zsh your default user shell, do the following: 1. Add the line /sw/bin/zsh to the file /etc/shells 2. Execute the following command: chsh -s /sw/bin/zsh 3. Open a new terminal session. . Zsh is a shell designed for interactive use, although it is also a powerful scripting language. Many of the useful features of bash, ksh, and tcsh were incorporated into zsh; many original features were added. Its syntax is that of an augmented ksh. It is recommended that you read http://zsh.sunsite.dk/Intro/intro_toc.html before installing this shell. You might also consider installing the zsh-templates package and the zsh-helpfiles package. http://babyurl.com/2SR9Ue DescUsage: All config files should be kept in %p/etc/zsh. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- ATTENTION ATTENTION -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- This shell is NOT preconfigured. Sample configure scripts can be found in your %p/share/doc/zsh directory You may manually move those sample files to %p/etc/zsh or alter them to your liking! Alternatively, the fink zsh-templates package provides a fully configured set of enhanced configuration scripts and functions, many specifically designed to facilitate interaction with the OS X environment. Documentation is included by default, please read it carefully. In addition, the zsh-helpfiles package provides additional documentation. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- ATTENTION ATTENTION -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- DescPort: This is being looked after by W G Scott [EMAIL PROTECTED] License: GPL Maintainer: Darian Lanx [EMAIL PROTECTED] Homepage: http://zsh.sunsite.dk/ --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/shells zsh.info,1.5,1.6
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv9005 Modified Files: zsh.info Log Message: zsh version upgrade to 4.3.1 10.4-transitional branch/shells Index: zsh.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells/zsh.info,v retrieving revision 1.5 retrieving revision 1.6 diff -u -d -r1.5 -r1.6 --- zsh.info5 Dec 2005 21:16:14 - 1.5 +++ zsh.info28 Feb 2006 21:39:51 - 1.6 @@ -1,8 +1,8 @@ Package: zsh -Version: 4.2.6 +Version: 4.3.1 Revision: 1 -Depends: libiconv, pcre-shlibs, libncurses5-shlibs -BuildDepends: libiconv-dev, pcre, pcre-bin, libncurses5 +Depends: libiconv, pcre-shlibs, libncurses5-shlibs (= 5.4-20041023-10) +BuildDepends: libiconv-dev, pcre, pcre-bin, libncurses5 (= 5.4-20041023-10) CustomMirror: Master: ftp://ftp.zsh.org/pub/ eur: ftp://ftp.lysator.liu.se/pub/unix/zsh/ @@ -25,9 +25,9 @@ nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/%n-%v.tar.bz2 -Source-MD5: 2cefebf742c190cbc611baded825db64 +Source-MD5: be4ff30f2cf848914303d7bdf17ae3cd Source2: mirror:custom:%n-%v-doc.tar.bz2 -Source2-MD5: 3ca3b7c199db6eb942f2a296e3fad270 +Source2-MD5: 89a56c55978d614dda7fb8d085befbe3 ConfigureParams: --mandir=%p/share/man --infodir=%p/share/info --enable-etcdir=%p/etc/%n --enable-maildir-support --enable-pcre --enable-zsh-secure-free --enable-fndir=%p/share/%n --enable-function-subdirs --with-curses-terminfo --with-tcsetpgrp CompileScript: perl -pi.bak -e s;DL_EXT=so;DL_EXT=dylib;g configure @@ -60,7 +60,6 @@ before installing this shell. You might also consider installing the zsh-templates package and the zsh-helpfiles package. -http://babyurl.com/2SR9Ue DescUsage: All config files should be kept in %p/etc/zsh. @@ -87,10 +86,8 @@ -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- DescPort: - Getting it from a specific sourceforge mirror until I add Custom mirrors. Their -mirrors seem to be pretty messed up. -The 10.4 specific patch is required for the shell to -function. +Recent updates by W. G. Scott [EMAIL PROTECTED] +Please complain to him, not dmalloc! License: GPL Maintainer: Darian Lanx [EMAIL PROTECTED] --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/shells zsh.info,1.2,1.3
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv19703 Modified Files: zsh.info Log Message: zsh version upgrade to 4.3.1 10.4 branch/shells Index: zsh.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells/zsh.info,v retrieving revision 1.2 retrieving revision 1.3 diff -u -d -r1.2 -r1.3 --- zsh.info21 Jan 2006 17:50:30 - 1.2 +++ zsh.info28 Feb 2006 21:13:43 - 1.3 @@ -1,5 +1,5 @@ Package: zsh -Version: 4.2.6 +Version: 4.3.1 Revision: 1001 Depends: libiconv, pcre-shlibs, libncurses5-shlibs (= 5.4-20041023-1006) BuildDepends: libiconv-dev, pcre, pcre-bin, libncurses5 (= 5.4-20041023-1006) @@ -25,9 +25,9 @@ nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/%n-%v.tar.bz2 -Source-MD5: 2cefebf742c190cbc611baded825db64 +Source-MD5: be4ff30f2cf848914303d7bdf17ae3cd Source2: mirror:custom:%n-%v-doc.tar.bz2 -Source2-MD5: 3ca3b7c199db6eb942f2a296e3fad270 +Source2-MD5: 89a56c55978d614dda7fb8d085befbe3 ConfigureParams: --mandir=%p/share/man --infodir=%p/share/info --enable-etcdir=%p/etc/%n --enable-maildir-support --enable-pcre --enable-zsh-secure-free --enable-fndir=%p/share/%n --enable-function-subdirs --with-curses-terminfo --with-tcsetpgrp CompileScript: perl -pi.bak -e s;DL_EXT=so;DL_EXT=dylib;g configure @@ -60,7 +60,6 @@ before installing this shell. You might also consider installing the zsh-templates package and the zsh-helpfiles package. -http://babyurl.com/2SR9Ue DescUsage: All config files should be kept in %p/etc/zsh. @@ -87,10 +86,8 @@ -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- DescPort: - Getting it from a specific sourceforge mirror until I add Custom mirrors. Their -mirrors seem to be pretty messed up. -The 10.4 specific patch is required for the shell to -function. +Recent updates by W. G. Scott [EMAIL PROTECTED] +Please complain to him, not dmalloc! License: GPL Maintainer: Darian Lanx [EMAIL PROTECTED] --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/shells zsh-helpfiles.info,1.3,1.4
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv8317 Modified Files: zsh-helpfiles.info Log Message: zsh-helpfiles updated to use the 4.3.1 man pages Index: zsh-helpfiles.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells/zsh-helpfiles.info,v retrieving revision 1.3 retrieving revision 1.4 diff -u -d -r1.3 -r1.4 --- zsh-helpfiles.info 4 Jan 2006 03:32:25 - 1.3 +++ zsh-helpfiles.info 1 Mar 2006 15:25:07 - 1.4 @@ -1,8 +1,8 @@ Package: zsh-helpfiles -Version: 4.2.6 +Version: 4.3.1 Revision: 1 -Depends: zsh (= 4.2.6) -BuildDepends: zsh (= 4.2.6) +Depends: zsh (= 4.3.1) +BuildDepends: zsh (= 4.3.1) CustomMirror: Master: ftp://ftp.zsh.org/pub/ eur: ftp://ftp.lysator.liu.se/pub/unix/zsh/ @@ -25,7 +25,7 @@ nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/zsh-%v.tar.bz2 -Source-MD5: 2cefebf742c190cbc611baded825db64 +Source-MD5: be4ff30f2cf848914303d7bdf17ae3cd Source2: http://www.chemistry.ucsc.edu/~wgscott/mystuff/zsh/Library/init/zsh/local-functions/run-help Source2-MD5: 371638ce4c255993ea9c528981b3d113 CompileScript: --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/shells zsh-helpfiles.info,1.1,1.2
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv11147 Modified Files: zsh-helpfiles.info Log Message: zsh-helpfiles updated to use the 4.3.1 man pages Index: zsh-helpfiles.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells/zsh-helpfiles.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- zsh-helpfiles.info 20 Jan 2006 20:30:45 - 1.1 +++ zsh-helpfiles.info 1 Mar 2006 15:29:18 - 1.2 @@ -1,8 +1,8 @@ Package: zsh-helpfiles -Version: 4.2.6 +Version: 4.3.1 Revision: 1 -Depends: zsh (= 4.2.6) -BuildDepends: zsh (= 4.2.6) +Depends: zsh (= 4.3.1) +BuildDepends: zsh (= 4.3.1) CustomMirror: Master: ftp://ftp.zsh.org/pub/ eur: ftp://ftp.lysator.liu.se/pub/unix/zsh/ @@ -25,7 +25,7 @@ nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/zsh-%v.tar.bz2 -Source-MD5: 2cefebf742c190cbc611baded825db64 +Source-MD5: be4ff30f2cf848914303d7bdf17ae3cd Source2: http://www.chemistry.ucsc.edu/~wgscott/mystuff/zsh/Library/init/zsh/local-functions/run-help Source2-MD5: 371638ce4c255993ea9c528981b3d113 CompileScript: --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/shells zsh-helpfiles.info,1.2,1.3
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv28017 Modified Files: zsh-helpfiles.info Log Message: zsh-helpfiles updated to use the 4.3.2 man pages Index: zsh-helpfiles.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells/zsh-helpfiles.info,v retrieving revision 1.2 retrieving revision 1.3 diff -u -d -r1.2 -r1.3 --- zsh-helpfiles.info 1 Mar 2006 15:29:18 - 1.2 +++ zsh-helpfiles.info 3 Mar 2006 00:51:13 - 1.3 @@ -1,8 +1,8 @@ Package: zsh-helpfiles -Version: 4.3.1 +Version: 4.3.2 Revision: 1 -Depends: zsh (= 4.3.1) -BuildDepends: zsh (= 4.3.1) +Depends: zsh (= %v) +BuildDepends: zsh (= %v) CustomMirror: Master: ftp://ftp.zsh.org/pub/ eur: ftp://ftp.lysator.liu.se/pub/unix/zsh/ @@ -25,9 +25,9 @@ nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/zsh-%v.tar.bz2 -Source-MD5: be4ff30f2cf848914303d7bdf17ae3cd Source2: http://www.chemistry.ucsc.edu/~wgscott/mystuff/zsh/Library/init/zsh/local-functions/run-help -Source2-MD5: 371638ce4c255993ea9c528981b3d113 +Source-MD5: e13fc4bb338fbb27ef7508a474310c8f +Source2-MD5: 371638ce4c255993ea9c528981b3d113 CompileScript: #!/bin/zsh -ef # the perl magic token breaks Util/helpfiles --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/shells zsh.info,1.3,1.4
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv28714 Modified Files: zsh.info Log Message: zsh version update to 4.3.2 Index: zsh.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells/zsh.info,v retrieving revision 1.3 retrieving revision 1.4 diff -u -d -r1.3 -r1.4 --- zsh.info28 Feb 2006 21:13:43 - 1.3 +++ zsh.info3 Mar 2006 00:52:20 - 1.4 @@ -1,5 +1,5 @@ Package: zsh -Version: 4.3.1 +Version: 4.3.2 Revision: 1001 Depends: libiconv, pcre-shlibs, libncurses5-shlibs (= 5.4-20041023-1006) BuildDepends: libiconv-dev, pcre, pcre-bin, libncurses5 (= 5.4-20041023-1006) @@ -25,9 +25,9 @@ nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/%n-%v.tar.bz2 -Source-MD5: be4ff30f2cf848914303d7bdf17ae3cd +Source-MD5: e13fc4bb338fbb27ef7508a474310c8f Source2: mirror:custom:%n-%v-doc.tar.bz2 -Source2-MD5: 89a56c55978d614dda7fb8d085befbe3 +Source2-MD5: 69d1ab9d179d7d16eb0251a0a60e0457 ConfigureParams: --mandir=%p/share/man --infodir=%p/share/info --enable-etcdir=%p/etc/%n --enable-maildir-support --enable-pcre --enable-zsh-secure-free --enable-fndir=%p/share/%n --enable-function-subdirs --with-curses-terminfo --with-tcsetpgrp CompileScript: perl -pi.bak -e s;DL_EXT=so;DL_EXT=dylib;g configure --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/shells zsh.info,1.6,1.7
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv2047 Modified Files: zsh.info Log Message: zsh version upgrade to 4.3.2 10.4-transitional branch/shells Index: zsh.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells/zsh.info,v retrieving revision 1.6 retrieving revision 1.7 diff -u -d -r1.6 -r1.7 --- zsh.info28 Feb 2006 21:39:51 - 1.6 +++ zsh.info3 Mar 2006 01:50:34 - 1.7 @@ -1,8 +1,8 @@ Package: zsh -Version: 4.3.1 +Version: 4.3.2 Revision: 1 -Depends: libiconv, pcre-shlibs, libncurses5-shlibs (= 5.4-20041023-10) -BuildDepends: libiconv-dev, pcre, pcre-bin, libncurses5 (= 5.4-20041023-10) +Depends: libiconv, pcre-shlibs, libncurses5-shlibs (= 5.4 ) +BuildDepends: libiconv-dev, pcre, pcre-bin, libncurses5 (= 5.4 ) CustomMirror: Master: ftp://ftp.zsh.org/pub/ eur: ftp://ftp.lysator.liu.se/pub/unix/zsh/ @@ -25,9 +25,9 @@ nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/%n-%v.tar.bz2 -Source-MD5: be4ff30f2cf848914303d7bdf17ae3cd +Source-MD5: e13fc4bb338fbb27ef7508a474310c8f Source2: mirror:custom:%n-%v-doc.tar.bz2 -Source2-MD5: 89a56c55978d614dda7fb8d085befbe3 +Source2-MD5: 69d1ab9d179d7d16eb0251a0a60e0457 ConfigureParams: --mandir=%p/share/man --infodir=%p/share/info --enable-etcdir=%p/etc/%n --enable-maildir-support --enable-pcre --enable-zsh-secure-free --enable-fndir=%p/share/%n --enable-function-subdirs --with-curses-terminfo --with-tcsetpgrp CompileScript: perl -pi.bak -e s;DL_EXT=so;DL_EXT=dylib;g configure --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/shells zsh-helpfiles.info,1.4,1.5
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv2603 Modified Files: zsh-helpfiles.info Log Message: zsh-helpfiles updated to use the 4.3.2 man pages Index: zsh-helpfiles.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells/zsh-helpfiles.info,v retrieving revision 1.4 retrieving revision 1.5 diff -u -d -r1.4 -r1.5 --- zsh-helpfiles.info 1 Mar 2006 15:25:07 - 1.4 +++ zsh-helpfiles.info 3 Mar 2006 01:51:14 - 1.5 @@ -1,8 +1,8 @@ Package: zsh-helpfiles -Version: 4.3.1 +Version: 4.3.2 Revision: 1 -Depends: zsh (= 4.3.1) -BuildDepends: zsh (= 4.3.1) +Depends: zsh (= %v) +BuildDepends: zsh (= %v) CustomMirror: Master: ftp://ftp.zsh.org/pub/ eur: ftp://ftp.lysator.liu.se/pub/unix/zsh/ @@ -25,9 +25,9 @@ nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/zsh-%v.tar.bz2 -Source-MD5: be4ff30f2cf848914303d7bdf17ae3cd Source2: http://www.chemistry.ucsc.edu/~wgscott/mystuff/zsh/Library/init/zsh/local-functions/run-help -Source2-MD5: 371638ce4c255993ea9c528981b3d113 +Source-MD5: e13fc4bb338fbb27ef7508a474310c8f +Source2-MD5: 371638ce4c255993ea9c528981b3d113 CompileScript: #!/bin/zsh -ef # the perl magic token breaks Util/helpfiles --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/shells zsh.info,1.7,1.8
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv4702 Modified Files: zsh.info Log Message: zsh -- avoiding bad luck by chopping out broken mirror Index: zsh.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/shells/zsh.info,v retrieving revision 1.7 retrieving revision 1.8 diff -u -d -r1.7 -r1.8 --- zsh.info3 Mar 2006 01:50:34 - 1.7 +++ zsh.info3 Mar 2006 04:30:55 - 1.8 @@ -22,7 +22,6 @@ eur-RO: ftp://ftp.kappa.ro/pub/mirrors/ftp.zsh.org/pub/zsh/ eur-SE: ftp://ftp.lysator.liu.se/pub/unix/zsh/ eur-UK: ftp://ftp.lysator.liu.se/pub/unix/zsh/ - nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/%n-%v.tar.bz2 Source-MD5: e13fc4bb338fbb27ef7508a474310c8f --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/shells zsh.info,1.4,1.5
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv4393 Modified Files: zsh.info Log Message: zsh -- avoiding bad luck by chopping out broken mirror Index: zsh.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells/zsh.info,v retrieving revision 1.4 retrieving revision 1.5 diff -u -d -r1.4 -r1.5 --- zsh.info3 Mar 2006 00:52:20 - 1.4 +++ zsh.info3 Mar 2006 04:30:19 - 1.5 @@ -22,7 +22,6 @@ eur-RO: ftp://ftp.kappa.ro/pub/mirrors/ftp.zsh.org/pub/zsh/ eur-SE: ftp://ftp.lysator.liu.se/pub/unix/zsh/ eur-UK: ftp://ftp.lysator.liu.se/pub/unix/zsh/ - nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/%n-%v.tar.bz2 Source-MD5: e13fc4bb338fbb27ef7508a474310c8f --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/stable/main/finkinfo/shells zsh.info,1.1,1.2
Update of /cvsroot/fink/dists/10.4-transitional/stable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv5191 Modified Files: zsh.info Log Message: zsh -- avoiding bad luck by chopping out broken mirror Index: zsh.info === RCS file: /cvsroot/fink/dists/10.4-transitional/stable/main/finkinfo/shells/zsh.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- zsh.info28 Feb 2006 21:26:36 - 1.1 +++ zsh.info3 Mar 2006 04:31:46 - 1.2 @@ -22,7 +22,6 @@ eur-RO: ftp://ftp.kappa.ro/pub/mirrors/ftp.zsh.org/pub/zsh/ eur-SE: ftp://ftp.lysator.liu.se/pub/unix/zsh/ eur-UK: ftp://ftp.lysator.liu.se/pub/unix/zsh/ - nam-US: http://mirrors.theonlinerecordstore.com/zsh/ Source: mirror:custom:/%n-%v.tar.bz2 Source-MD5: 2cefebf742c190cbc611baded825db64 --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci ccp4.info,1.5,1.6
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv24917 Modified Files: ccp4.info Log Message: ccp4 added Architecture: powerpc due to dependency on g77 Index: ccp4.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4.info,v retrieving revision 1.5 retrieving revision 1.6 diff -u -d -r1.5 -r1.6 --- ccp4.info 27 Feb 2006 22:54:32 - 1.5 +++ ccp4.info 3 Mar 2006 06:52:26 - 1.6 @@ -2,6 +2,7 @@ Version: 6.0 Revision: 1002 GCC: 4 +Architecture: powerpc Source: ftp://ftp.%n.ac.uk/%n/%v.0/packed/%n-%v.0-core-src.tar.gz Source2: ftp://ftp.%n.ac.uk/%n/%v.0/packed/phaser-1.3.2-cctbx-src.tar.gz Source-MD5: 00fe64b4600c9602aef56af0135f3016 --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci ccp4.info,1.6,1.7
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv25849 Modified Files: ccp4.info Log Message: ccp4 added conflicts/replaces with the new ccp4-gfortran Index: ccp4.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4.info,v retrieving revision 1.6 retrieving revision 1.7 diff -u -d -r1.6 -r1.7 --- ccp4.info 3 Mar 2006 06:52:26 - 1.6 +++ ccp4.info 3 Mar 2006 06:54:04 - 1.7 @@ -12,8 +12,8 @@ Source3-MD5: 21568dd2475505929573a3fd452c538f Depends: x11, tcltk, blt, ccp4-shlibs (= %v-%r), fftw-shlibs | fftw-mpi-shlibs, clipper-bin BuildDepends: g77 (= 3.4.0-2), f2c, fort77, tcltk-dev, fftw | fftw-mpi -Replaces: mosflm (= 6.2.3-2), mosflm-small (= 6.2.3-2), refmac (= 5.1999-3), ccp4lib, ccp4lib-shlibs, ccp4 (= 5.99.5-) -Conflicts: ccp4lib, ccp4lib-shlibs, ccp4 (= 5.99.5- ) +Replaces: mosflm (= 6.2.3-2), mosflm-small (= 6.2.3-2), refmac (= 5.1999-3), ccp4lib, ccp4lib-shlibs, ccp4 (= 5.99.5-), ccp4-gfortran +Conflicts: ccp4lib, ccp4lib-shlibs, ccp4 (= 5.99.5- ), ccp4-gfortran NoSetCPPFLAGS: true NoSetLDFLAGS: true # --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci ccp4-gfortran.info,NONE,1.1
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv27479 Added Files: ccp4-gfortran.info Log Message: first attempt at a gfortran-based ccp4 package --- NEW FILE: ccp4-gfortran.info --- Package: ccp4-gfortran Version: 6.0 Revision: 1002 GCC: 4 Source: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/ccp4-%v.0-core-src.tar.gz Source2: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/phaser-1.3.2-cctbx-src.tar.gz Source-MD5: 00fe64b4600c9602aef56af0135f3016 Source2-MD5: e4eee45ca8a299242a1089e35e63c7a0 SourceDirectory: ccp4-%v Source3: http://chemistry.ucsc.edu/~wgscott/xtal/xtalfink/XCCPJiffy-custom.gz Source3-MD5: 21568dd2475505929573a3fd452c538f Depends: x11, tcltk, blt BuildDepends: gcc4 (= 4.1.0-1), f2c, fort77, tcltk-dev Replaces: mosflm (= 6.2.3-2), mosflm-small (= 6.2.3-2), refmac (= 5.1999-3), ccp4-shlibs, ccp4, ccp4-dev, bundle-ccp4, clipper-bin Conflicts: ccp4-shlibs, ccp4, ccp4-dev, bundle-ccp4, clipper-bin NoSetCPPFLAGS: true NoSetLDFLAGS: true # Patch: ccp4.patch PatchScript: #!/bin/zsh -ef umask 0022 # # setup script for tcsh, zsh and bash users export TEMPXTAL=$PWD:h # perl -pi.bak -e 's|/xtal|\$TEMPXTAL|g' include/ccp4.setup* # build prefix (changed in install) perl -pi.bak -e 's|/prefix|%p|g' include/ccp4.setup*# location of tcktk, blt perl -pi.bak -e 's|/usr/local/bin|%p/bin|g' include/ccp4.setup* # same # perl -pi.bak -e 's|SW_PREFIX|%p|g' **/configure# location of tcktk, blt cp include/ccp4.setup-dist include/ccp4.setup rm -f include/ccp4.setup-bash **/configure.bak include/ccp4.setup*.bak # # Set up XCCPJiffy wrapper scripts in $CCP4/etc # These are small wrapper scripts for xplot84driver and xloggraph generated by the patch chmod a+x etc/x* # Try to fix the dylib install path in configure perl -pi.bak -e 's|\$rpath|%p/lib/ccp4-%v|g' **/configure CompileScript: #!/bin/zsh -ef umask 0022 # These are required for the build environment export TEMPXTAL=$PWD:h source include/ccp4.setup-zsh export DYLD_LIBRARY_PATH=$CLIB export rpath=%p/lib/ccp4-%v export RPATH=%p/lib/ccp4-%v # The cctbx sub-package requires us to use the system's own Python export PATH=/System/Library/Frameworks/Python.framework/Versions/Current/bin:$PATH export PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current export PYTHONPATH=/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3 # gfortran is actually used by default, but to ensure the right thing happens, specify it. # Build static libs only for now. FC=gfortran ./configure --with-x Darwin # FC=gfortran ./configure --with-x --with-shared-libs --with-fftw=%p Darwin # fix some post-configure bugs by getting rid of -lg2c perl -pi.bak -e 's|-lg2c||g' x-windows/**/*akefile* # make -i make -i install # # xloggraph will fail, but we will link it with fort77 below # # Make wrappers for xplot84driver and xloggraph, so rename the executables cd x-windows/XCCPJIFFY cp xplot84driver $CBIN/xplot84driver.exe rm -f $CBIN/xplot84driver # # Manually link xloggraph with fort77 (fails in make) echo echo ** echo Re-linking xloggraph with fort77. Ignore previous error messages. echo ** echo # fort77 -fno-second-underscore -o xloggraph -L/usr/lib msg_box.o ZDr2d.o EditString.o hardcopy_ctrl.o xloggraph.o log_file.o tom_fortran_interface.o bits_and_pieces.o graphics.o -g -Os -I/usr/include/X11R6 -L/usr/X11R6/lib -lXaw -lXmu -lXt -lSM -lICE -lXpm -lXext -lX11 -lm -lgcc -lSystemStubs # sleep 10 # cp xloggraph $CBIN/xloggraph.exe cd ../.. # # make realclean /bin/rm -f **/*.o echo Compile Phase Completed! echo There are $(command ls -1 $CBIN | wc -l) programs in $CBIN; there should be 200 InstallScript: #!/bin/zsh -ef umask 0022 export TEMPXTAL=$PWD:h source include/ccp4.setup-zsh export DYLD_LIBRARY_PATH=$CLIB ORIGDIR=$(dirname $PWD) # Change environment scripts to match final installation perl -pi.bak -e 's|\$TEMPXTAL|%p/share/xtal|g' include/ccp4.setup* # install prefix # perl -pi.bak -e 's|\$TEMPXTAL|%p/share/xtal|g' lib/cctbx/cctbx_build/setpaths* # # cp ../XCCPJiffy-custom.gz XCCPJiffy.gz ; gunzip XCCPJiffy.gz; chmod a+x XCCPJiffy perl -pi.bak -e 's|5.0.1|%v|g' XCCPJiffy mv -f XCCPJiffy lib/X11/app-defaults/XCCPJiffy # perl -pi.bak -e 's|/src/fink.build/ccp4-%v-%r|/share/xtal|g' bin/clipper-config rm -f bin/clipper-config.bak perl -pi.bak -e 's|lclipper |lclipper-core |g' bin/clipper-config rm -f bin/clipper-config.bak perl -pi.bak -e 's|lib/lib -lrfftw -lfftw |lib/ccp4-%v -lsrfftw -lsfftw |g' bin/clipper-config
dists/10.4/unstable/main/finkinfo/sci mosflm.info,1.4,1.5
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv28231 Modified Files: mosflm.info Log Message: mosflm added Architecture: powerpc due to g77 dependence Index: mosflm.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/mosflm.info,v retrieving revision 1.4 retrieving revision 1.5 diff -u -d -r1.4 -r1.5 --- mosflm.info 27 Feb 2006 22:56:21 - 1.4 +++ mosflm.info 3 Mar 2006 06:57:52 - 1.5 @@ -1,6 +1,7 @@ Package: mosflm Version: 6.2.5 Revision: 1006 +Architecture: powerpc Source: http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver625/build-it-yourself/mosflm625.tgz SourceDirectory: mosflm625 Source-MD5: 08c0730fa588d71bed219a7763322672 --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci chooch.info,1.1,1.2
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv30463 Modified Files: chooch.info Log Message: removed false depends on g77 Index: chooch.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/chooch.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- chooch.info 20 Jan 2006 20:30:39 - 1.1 +++ chooch.info 3 Mar 2006 07:01:24 - 1.2 @@ -5,7 +5,7 @@ Source-MD5: fbb9ca11264f003eacc62358f3e8f5c6 SourceDirectory: chooch Depends: gsl (= 1.1 ), cgraph, pgplot -BuildDepends: gsl (= 1.1 ), cgraph, pgplot, g77 +BuildDepends: gsl (= 1.1 ), cgraph, pgplot SetLDFLAGS: -L%p/lib/pgplot CompileScript: #!/bin/zsh -ef --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci apbs.info,1.3,1.4 apbs-mpi.info,1.4,1.5 pdb2pqr.info,1.1,1.2
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv10894 Modified Files: apbs.info apbs-mpi.info pdb2pqr.info Log Message: fixed g77 dependency Index: apbs-mpi.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/apbs-mpi.info,v retrieving revision 1.4 retrieving revision 1.5 diff -u -d -r1.4 -r1.5 --- apbs-mpi.info 4 Feb 2006 17:38:13 - 1.4 +++ apbs-mpi.info 3 Mar 2006 07:22:31 - 1.5 @@ -9,7 +9,7 @@ Source2-MD5: cd114bc8e4fcfa052cc6c3e69210d31c SourceDirectory: apbs-%v Depends: maloc-mpi, lammpi (= 7.0.6-1011), readline-shlibs (= 4.3-1028), gnuplot (= 4.0.0-1002) -BuildDepends: g77, lammpi-dev (= 7.0.6-1011), maloc-mpi +BuildDepends: g77 | fort77, lammpi-dev (= 7.0.6-1011), maloc-mpi ConfigureParams: FETK_INCLUDE=%p/include FETK_LIBRARY=%p/lib FETK_MPI_INCLUDE=%p/include FETK_MPI_LIBRARY=%p/lib FETK_PREFIX=%p py_path=/usr/bin/python2.3 setCFLAGS: -I%p/include/maloc setLDFLAGS: -L%p/lib/powerpc-apple-darwin$(uname -r) Index: pdb2pqr.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pdb2pqr.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- pdb2pqr.info20 Jan 2006 20:30:40 - 1.1 +++ pdb2pqr.info3 Mar 2006 07:22:31 - 1.2 @@ -1,10 +1,10 @@ Package: pdb2pqr Version: 1.0.2 -Revision: 3 +Revision: 4 Source: mirror:sourceforge:%n/%n-%v.tar.gz Source-MD5: 4294713d22ae34079fcd4f652f2c793a SourceDirectory: %n-%v -BuildDepends: g77 +BuildDepends: g77 | fort77 Description: Converts pdb files to pqr NoSetCPPFLAGS: true NoSetLDFLAGS: true @@ -16,7 +16,7 @@ perl -pi.bak -e 's|python2.2|python2.3|g' **/* 2/dev/null perl -pi.bak -e 's|python2 |python2.3 |g' **/* 2/dev/null perl -pi.bak -e s|/usr/bin/python2.3|/usr/bin/python|g **/*.py 2/dev/null -py_path=/usr/bin/python2.3 LDFLAGS=-F/System/Library/Frameworks/Python.framework ./configure +FC=gfortran py_path=/usr/bin/python2.3 LDFLAGS=-F/System/Library/Frameworks/Python.framework ./configure --with-f77=gfortran make rm -f **/*.o Index: apbs.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/apbs.info,v retrieving revision 1.3 retrieving revision 1.4 diff -u -d -r1.3 -r1.4 --- apbs.info 4 Feb 2006 17:38:13 - 1.3 +++ apbs.info 3 Mar 2006 07:22:31 - 1.4 @@ -5,7 +5,7 @@ Source-MD5: a9d5f8b24a40087998267c9df3eecceb SourceDirectory: %n-%v Depends: maloc, readline-shlibs (= 4.3-1028), gnuplot (= 4.0.0-1002), pdb2pqr -BuildDepends: g77, maloc +BuildDepends: g77 | fort77, maloc Conflicts: apbs-mpi Replaces: apbs-mpi ConfigureParams: FETK_INCLUDE=%p/include FETK_LIBRARY=%p/lib FETK_PREFIX=%p py_path=/usr/bin/python2.3 --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci ccp4-onlylibs-dev.info,1.7,1.8
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv30333 Modified Files: ccp4-onlylibs-dev.info Log Message: ccp4-onlylibs-dev now uses gfortran instead of g77 Index: ccp4-onlylibs-dev.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4-onlylibs-dev.info,v retrieving revision 1.7 retrieving revision 1.8 diff -u -d -r1.7 -r1.8 --- ccp4-onlylibs-dev.info 2 Mar 2006 01:13:32 - 1.7 +++ ccp4-onlylibs-dev.info 3 Mar 2006 23:53:19 - 1.8 @@ -1,7 +1,7 @@ Package: ccp4-onlylibs-dev # Use version numbering to sync with the current CCP4 release: Version: 6.0 -Revision: 1006 +Revision: 1010 GCC: 4.0 #Source: ftp://ftp.ccp4.ac.uk/prerelease/%n.tar.gz #Source-MD5: cf085751833aecc7ccef9e67de7e9fcc @@ -14,13 +14,13 @@ #Source3: http://chemistry.ucsc.edu/~wgscott/xtal/clipper_%v-src.tgz #Source3-MD5: 1c7a91218a4a27af1c2506f39df4692a Depends: -BuildDepends: g77 (= 3.4.0-2), f2c, fort77 +BuildDepends: gcc4 (= 2:4.1.0-1) BuildDependsOnly: false NoSetCPPFLAGS: true NoSetLDFLAGS: true ### PatchScript: -#!/bin/zsh -efv +#!/bin/zsh -ef umask 0022 # Use my patched configure and ccp4.setup-zsh files cp ../ccp4.setup-zsh include/. @@ -44,14 +44,14 @@ ### CompileScript: -#!/bin/zsh -efv +#!/bin/zsh -ef umask 0022 #cp -R ../src/* lib/clipper/src/. export TEMPXTAL=$PWD:h source include/ccp4.setup-zsh export DYLD_LIBRARY_PATH=$CLIB # -FC=g77 ./configure --onlylibs Darwin +FC=gfortran ./configure --onlylibs Darwin # # fix some post-configure bugs # @@ -67,7 +67,7 @@ ### InstallScript: -#!/bin/zsh -efv +#!/bin/zsh -ef umask 0022 export TEMPXTAL=$PWD:h source include/ccp4.setup-zsh --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci chooch.info,1.2,1.3
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv30257 Modified Files: chooch.info Log Message: removed spurious g77 dependency Index: chooch.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/chooch.info,v retrieving revision 1.2 retrieving revision 1.3 diff -u -d -r1.2 -r1.3 --- chooch.info 26 Dec 2005 05:30:20 - 1.2 +++ chooch.info 4 Mar 2006 00:28:18 - 1.3 @@ -5,7 +5,7 @@ Source-MD5: fbb9ca11264f003eacc62358f3e8f5c6 SourceDirectory: chooch Depends: gsl (= 1.1 ), cgraph, pgplot -BuildDepends: gsl (= 1.1 ), cgraph, pgplot, g77 +BuildDepends: gsl (= 1.1 ), cgraph, pgplot SetLDFLAGS: -L%p/lib/pgplot CompileScript: #!/bin/zsh -ef --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci coot.info,1.16,1.17
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv18368 Modified Files: coot.info Log Message: removed spurious g77 dependency Index: coot.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.16 retrieving revision 1.17 diff -u -d -r1.16 -r1.17 --- coot.info 1 Mar 2006 16:40:04 - 1.16 +++ coot.info 4 Mar 2006 00:59:22 - 1.17 @@ -11,7 +11,7 @@ Source3: http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz Source3-MD5: c09bb6b5524901cb0fde14589546224e ### -BuildDepends: ccp4-onlylibs-dev, glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24, python, g77 +BuildDepends: ccp4-onlylibs-dev, glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24, python # Depends: guile16-shlibs, gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (= 2.3.16-2), coot-shlibs (= %v-%r), python24, python # --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci tinker.info,1.1,1.2
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv22307 Modified Files: tinker.info Log Message: tinker package changed for gfortran Index: tinker.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tinker.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- tinker.info 20 Jan 2006 20:30:40 - 1.1 +++ tinker.info 4 Mar 2006 04:40:18 - 1.2 @@ -1,15 +1,17 @@ Package: tinker Version: 4.2.1 -Revision: 1 +Revision: 2 Source: ftp://dasher.wustl.edu/pub/%n.tar.gz SourceRename: %n-%v.tar.gz SourceDirectory: %n Source-MD5: 5618d8a373896f00e452b137200223fd -BuildDepends: g77 +BuildDepends: gcc4 PatchScript: cp apple/gnu/*.make source/. cp apple/gnu/*.f source/. chmod +x source/*.make +# Use gfortran instead of g77 to compile this. +perl -pi.bak -e 's|g77|gfortran|g' source/*.make CompileScript: cd source; ./compile.make --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci namot.patch,NONE,1.1 namot.info,1.3,1.4
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv32405
Modified Files:
namot.info
Added Files:
namot.patch
Log Message:
namot now works with GCC:4 thanks to Jack Howarth
--- NEW FILE: namot.patch ---
--- namot-2.2.0-pre4/src/graphics.c.org 2006-03-03 22:33:11.0 -0500
+++ namot-2.2.0-pre4/src/graphics.c 2006-03-03 22:38:21.0 -0500
@@ -1331,7 +1331,7 @@
PackPNGRows(
) {
int ctr1=0,ctr2=0;
-char *srcptr=NULL;
+unsigned char *srcptr=NULL;
png_byte **row_pointers;
long pos=0;
void *Imageptr;
--- namot-2.2.0-pre4/src/x.h.org2006-03-03 22:39:06.0 -0500
+++ namot-2.2.0-pre4/src/x.h2006-03-03 22:43:11.0 -0500
@@ -17,8 +17,9 @@
*/
#define Long long
+#ifndef HAVE_PNG_H
#define Byte unsigned char
-
+#endif
extern void InitX();
#ifdef GRAPHICS
Index: namot.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/namot.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- namot.info 3 Feb 2006 18:29:54 - 1.3
+++ namot.info 4 Mar 2006 05:01:46 - 1.4
@@ -1,35 +1,26 @@
-Package: namot
-Version: 2.2.0-pre4
-Revision: 1012
-Architecture: powerpc
-GCC: 3.3
-Source: mirror:sourceforge:%n/%n-%v.tgz
-Source-MD5: 33cc542fa56d46385cde3f35805d812f
-Depends: x11, lesstif-shlibs, readline-shlibs (= 4.3-1028), gsl-shlibs,
libpng3-shlibs
-BuildDepends: libpng3, gsl, lesstif, readline (= 4.3-1028), x11-dev, gcc3.3
-ConfigureParams: --mandir='${prefix}/share/man' --libexecdir='${prefix}/lib'
-SetCFLAGS: -force_flat_namespace
-SetCC: gcc-3.3
-SetCXX: g++-3.3
-Description: Nucleic Acid MOdelling Tool
-DescDetail:
-The Nucleic Acid Modeling Tool(NAMOT) is a program to
-allow users to manipulate molecular models of nucleic
-acids based on a set of reduced co-ordinates developed
-at Los Alamos National Laboratory and the Max Planck
-Institute for Biophysical Chemistry.
-It uses a combination of Xlib and Xt
-functions to build the interface. External, user modifi-
-able libraries allow the user to customize the program.
-The use of an extended description allows for the modeling
-of standard and unusual structures.
-
-DescPackaging:
- This version is compiled with g++-3.3, even in the 10.4 tree. If it is
- ever updated to a more recent compiler, anything which depends on it must
- be updated at the same time that it is.
-
-DocFiles: README AUTHORS COPYING NEWS
-Homepage: http://namot.sourceforge.net/
-License: Restrictive
-Maintainer: W. G. Scott [EMAIL PROTECTED]
+Package: namot
+Version: 2.2.0-pre4
+Revision: 1013
+Architecture: powerpc
+Source: mirror:sourceforge:%n/%n-%v.tgz
+Source-MD5: 33cc542fa56d46385cde3f35805d812f
+Patch: %n.patch
+Depends: x11, openmotif3-shlibs, readline-shlibs (= 4.3-1028), gsl-shlibs,
libpng3-shlibs
+BuildDepends: libpng3, gsl, openmotif3, readline (= 4.3-1028), x11-dev
+ConfigureParams: --mandir='${prefix}/share/man' --libexecdir='${prefix}/lib'
+SetCFLAGS: -force_flat_namespace
+Description: Nucleic Acid MOdelling Tool
+DescDetail:
+The Nucleic Acid Modeling Tool(NAMOT) is a program to allow users to
+manipulate molecular models of nucleic acids based on a set of reduced
+co-ordinates developed at Los Alamos National Laboratory and the Max Planck
+Institute for Biophysical Chemistry. It uses a combination of Xlib and Xt
+functions to build the interface. External, user modifiable libraries
+allow the user to customize the program. The use of an extended
+description allows for the modeling of standard and unusual structures.
+Thanks to Jack Howarth for numerous improvements.
+
+DocFiles: README AUTHORS COPYING NEWS
+Homepage: http://namot.sourceforge.net/
+License: Restrictive
+Maintainer: W. G. Scott [EMAIL PROTECTED]
---
This SF.Net email is sponsored by xPML, a groundbreaking scripting language
that extends applications into web and mobile media. Attend the live webcast
and join the prime developer group breaking into this new coding territory!
http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642
___
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https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci namot.info,1.4,1.5 namot.patch,1.1,1.2
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv4262
Modified Files:
namot.info namot.patch
Log Message:
get rid of mac line endings
Index: namot.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/namot.patch,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- namot.patch 4 Mar 2006 05:01:46 - 1.1
+++ namot.patch 4 Mar 2006 05:11:08 - 1.2
@@ -1,24 +1,24 @@
namot-2.2.0-pre4/src/graphics.c.org2006-03-03 22:33:11.0
-0500
-+++ namot-2.2.0-pre4/src/graphics.c2006-03-03 22:38:21.0 -0500
-@@ -1331,7 +1331,7 @@
- PackPNGRows(
- ) {
- int ctr1=0,ctr2=0;
--char *srcptr=NULL;
-+unsigned char *srcptr=NULL;
- png_byte **row_pointers;
- long pos=0;
- void *Imageptr;
namot-2.2.0-pre4/src/x.h.org 2006-03-03 22:39:06.0 -0500
-+++ namot-2.2.0-pre4/src/x.h 2006-03-03 22:43:11.0 -0500
-@@ -17,8 +17,9 @@
- */
-
- #define Long long
-+#ifndef HAVE_PNG_H
- #define Byte unsigned char
--
-+#endif
- extern void InitX();
-
- #ifdef GRAPHICS
+--- namot-2.2.0-pre4/src/graphics.c.org2006-03-03 22:33:11.0
-0500
namot-2.2.0-pre4/src/graphics.c2006-03-03 22:38:21.0 -0500
+@@ -1331,7 +1331,7 @@
+ PackPNGRows(
+ ) {
+ int ctr1=0,ctr2=0;
+-char *srcptr=NULL;
++unsigned char *srcptr=NULL;
+ png_byte **row_pointers;
+ long pos=0;
+ void *Imageptr;
+--- namot-2.2.0-pre4/src/x.h.org 2006-03-03 22:39:06.0 -0500
namot-2.2.0-pre4/src/x.h 2006-03-03 22:43:11.0 -0500
+@@ -17,8 +17,9 @@
+ */
+
+ #define Long long
++#ifndef HAVE_PNG_H
+ #define Byte unsigned char
+-
++#endif
+ extern void InitX();
+
+ #ifdef GRAPHICS
Index: namot.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/namot.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- namot.info 4 Mar 2006 05:01:46 - 1.4
+++ namot.info 4 Mar 2006 05:11:08 - 1.5
@@ -1,16 +1,16 @@
-Package: namot
-Version: 2.2.0-pre4
-Revision: 1013
-Architecture: powerpc
-Source: mirror:sourceforge:%n/%n-%v.tgz
-Source-MD5: 33cc542fa56d46385cde3f35805d812f
-Patch: %n.patch
-Depends: x11, openmotif3-shlibs, readline-shlibs (= 4.3-1028), gsl-shlibs,
libpng3-shlibs
-BuildDepends: libpng3, gsl, openmotif3, readline (= 4.3-1028), x11-dev
-ConfigureParams: --mandir='${prefix}/share/man' --libexecdir='${prefix}/lib'
-SetCFLAGS: -force_flat_namespace
-Description: Nucleic Acid MOdelling Tool
-DescDetail:
+Package: namot
+Version: 2.2.0-pre4
+Revision: 1013
+Architecture: powerpc
+Source: mirror:sourceforge:%n/%n-%v.tgz
+Source-MD5: 33cc542fa56d46385cde3f35805d812f
+Patch: %n.patch
+Depends: x11, openmotif3-shlibs, readline-shlibs (= 4.3-1028), gsl-shlibs,
libpng3-shlibs
+BuildDepends: libpng3, gsl, openmotif3, readline (= 4.3-1028), x11-dev
+ConfigureParams: --mandir='${prefix}/share/man' --libexecdir='${prefix}/lib'
+SetCFLAGS: -force_flat_namespace
+Description: Nucleic Acid MOdelling Tool
+DescDetail:
The Nucleic Acid Modeling Tool(NAMOT) is a program to allow users to
manipulate molecular models of nucleic acids based on a set of reduced
co-ordinates developed at Los Alamos National Laboratory and the Max Planck
@@ -18,9 +18,9 @@
functions to build the interface. External, user modifiable libraries
allow the user to customize the program. The use of an extended
description allows for the modeling of standard and unusual structures.
-Thanks to Jack Howarth for numerous improvements.
-
-DocFiles: README AUTHORS COPYING NEWS
-Homepage: http://namot.sourceforge.net/
-License: Restrictive
-Maintainer: W. G. Scott [EMAIL PROTECTED]
+Thanks to Jack Howarth for numerous improvements.
+
+DocFiles: README AUTHORS COPYING NEWS
+Homepage: http://namot.sourceforge.net/
+License: Restrictive
+Maintainer: W. G. Scott [EMAIL PROTECTED]
---
This SF.Net email is sponsored by xPML, a groundbreaking scripting language
that extends applications into web and mobile media. Attend the live webcast
and join the prime developer group breaking into this new coding territory!
http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642
___
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci namot.patch,NONE,1.1 namot.info,1.3,1.4
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv5464
Modified Files:
namot.info
Added Files:
namot.patch
Log Message:
namot now works with gcc4 thanks to Jack Howarth
--- NEW FILE: namot.patch ---
--- namot-2.2.0-pre4/src/graphics.c.org 2006-03-03 22:33:11.0 -0500
+++ namot-2.2.0-pre4/src/graphics.c 2006-03-03 22:38:21.0 -0500
@@ -1331,7 +1331,7 @@
PackPNGRows(
) {
int ctr1=0,ctr2=0;
-char *srcptr=NULL;
+unsigned char *srcptr=NULL;
png_byte **row_pointers;
long pos=0;
void *Imageptr;
--- namot-2.2.0-pre4/src/x.h.org2006-03-03 22:39:06.0 -0500
+++ namot-2.2.0-pre4/src/x.h2006-03-03 22:43:11.0 -0500
@@ -17,8 +17,9 @@
*/
#define Long long
+#ifndef HAVE_PNG_H
#define Byte unsigned char
-
+#endif
extern void InitX();
#ifdef GRAPHICS
Index: namot.info
===
RCS file:
/cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/namot.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- namot.info 3 Feb 2006 18:29:30 - 1.3
+++ namot.info 4 Mar 2006 05:13:18 - 1.4
@@ -1,33 +1,23 @@
Package: namot
Version: 2.2.0-pre4
-Revision: 12
-Architecture: powerpc
-GCC: 3.3
+Revision: 13
Source: mirror:sourceforge:%n/%n-%v.tgz
Source-MD5: 33cc542fa56d46385cde3f35805d812f
-Depends: x11, lesstif-shlibs, readline-shlibs, gsl-shlibs, libpng3-shlibs
-BuildDepends: libpng3, gsl, lesstif, readline, x11-dev, gcc3.3
+Patch: %n.patch
+Depends: x11, openmotif3-shlibs, readline-shlibs (= 4.3-28), gsl-shlibs,
libpng3-shlibs
+BuildDepends: libpng3, gsl, openmotif3, readline (= 4.3-28), x11-dev
ConfigureParams: --mandir='${prefix}/share/man' --libexecdir='${prefix}/lib'
SetCFLAGS: -force_flat_namespace
-SetCC: gcc-3.3
-SetCXX: g++-3.3
Description: Nucleic Acid MOdelling Tool
DescDetail:
-The Nucleic Acid Modeling Tool(NAMOT) is a program to
-allow users to manipulate molecular models of nucleic
-acids based on a set of reduced co-ordinates developed
-at Los Alamos National Laboratory and the Max Planck
-Institute for Biophysical Chemistry.
-It uses a combination of Xlib and Xt
-functions to build the interface. External, user modifi-
-able libraries allow the user to customize the program.
-The use of an extended description allows for the modeling
-of standard and unusual structures.
-
-DescPackaging:
- This version is compiled with g++-3.3, even in the 10.4 tree. If it is
- ever updated to a more recent compiler, anything which depends on it must
- be updated at the same time that it is.
+The Nucleic Acid Modeling Tool(NAMOT) is a program to allow users to
+manipulate molecular models of nucleic acids based on a set of reduced
+co-ordinates developed at Los Alamos National Laboratory and the Max Planck
+Institute for Biophysical Chemistry. It uses a combination of Xlib and Xt
+functions to build the interface. External, user modifiable libraries
+allow the user to customize the program. The use of an extended
+description allows for the modeling of standard and unusual structures.
+Thanks to Jack Howarth for numerous improvements.
DocFiles: README AUTHORS COPYING NEWS
Homepage: http://namot.sourceforge.net/
---
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that extends applications into web and mobile media. Attend the live webcast
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dists/10.4/unstable/main/finkinfo/sci namot.info,1.5,1.6
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv5623 Modified Files: namot.info Log Message: removed Architecture: powerpc as it is no longer required Index: namot.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/namot.info,v retrieving revision 1.5 retrieving revision 1.6 diff -u -d -r1.5 -r1.6 --- namot.info 4 Mar 2006 05:11:08 - 1.5 +++ namot.info 4 Mar 2006 05:14:04 - 1.6 @@ -1,7 +1,6 @@ Package: namot Version: 2.2.0-pre4 Revision: 1013 -Architecture: powerpc Source: mirror:sourceforge:%n/%n-%v.tgz Source-MD5: 33cc542fa56d46385cde3f35805d812f Patch: %n.patch --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci coot.info,1.6,1.7
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv12644 Modified Files: coot.info Log Message: removed g77 dependency from coot, which has no fortran code Index: coot.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.6 retrieving revision 1.7 diff -u -d -r1.6 -r1.7 --- coot.info 1 Mar 2006 16:40:04 - 1.6 +++ coot.info 4 Mar 2006 05:28:23 - 1.7 @@ -11,7 +11,7 @@ Source3: http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz Source3-MD5: c09bb6b5524901cb0fde14589546224e ### -BuildDepends: ccp4-onlylibs-dev (= 6.0-1005), glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24, python, g77 +BuildDepends: ccp4-onlylibs-dev (= 6.0-1005), glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24, python # Depends: guile16-shlibs, gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (= 2.3.16-2), coot-shlibs (= %v-%r), python24, python # --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci pymol-py.info,1.7,1.8
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv9960 Modified Files: pymol-py.info Log Message: pymol revision update Index: pymol-py.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/pymol-py.info,v retrieving revision 1.7 retrieving revision 1.8 diff -u -d -r1.7 -r1.8 --- pymol-py.info 19 Feb 2006 05:13:47 - 1.7 +++ pymol-py.info 7 Mar 2006 19:21:47 - 1.8 @@ -1,15 +1,15 @@ Info2: Package: pymol-py%type_pkg[python] Version: 0.99 -Revision: 1 +Revision: 2 Maintainer: Jack Howarth [EMAIL PROTECTED] Type: python (2.2 2.3 2.4) -Source: mirror:custom:pymol/pymol-0_99rc1-src.tgz +Source: mirror:custom:pymol/pymol-0_99rc6-src.tgz CustomMirror: Primary: http://easynews.dl.sourceforge.net/sourceforge -Source-MD5: 1dfb4b943e6a8dba06f4446b8a185bae -SourceDirectory: pymol-%v +Source-MD5: cb29385ab523f648d4db47a222b1d03e +SourceDirectory: pymol-%vrc6 Depends: python%type_pkg[python], libpng3-shlibs, numeric-py%type_pkg[python], tcltk, pmw-py%type_pkg[python] (= 1.2-1), freeglut-shlibs, blt-shlibs BuildDepends: libpng3, freeglut, db43-ssl|db43, readline (= 4.3-5), gdbm3, expat, tcltk-dev, blt Conflicts: pymol, pymol-py22, pymol-py23, pymol-py24 --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci pymol-py.info,1.5,1.6
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv10870 Modified Files: pymol-py.info Log Message: pymol revision update Index: pymol-py.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.info,v retrieving revision 1.5 retrieving revision 1.6 diff -u -d -r1.5 -r1.6 --- pymol-py.info 25 Feb 2006 16:59:12 - 1.5 +++ pymol-py.info 7 Mar 2006 19:23:31 - 1.6 @@ -1,15 +1,15 @@ Info2: Package: pymol-py%type_pkg[python] Version: 0.99 -Revision: 1001 +Revision: 1002 Maintainer: Jack Howarth [EMAIL PROTECTED] Type: python (2.3 2.4) -Source: mirror:custom:pymol/pymol-0_99rc1-src.tgz +Source: mirror:custom:pymol/pymol-0_99rc6-src.tgz CustomMirror: Primary: http://easynews.dl.sourceforge.net/sourceforge -Source-MD5: 1dfb4b943e6a8dba06f4446b8a185bae -SourceDirectory: pymol-%v +Source-MD5: cb29385ab523f648d4db47a222b1d03e +SourceDirectory: pymol-%vrc6 Depends: python%type_pkg[python], libpng3-shlibs, numeric-py%type_pkg[python], tcltk, pmw-py%type_pkg[python] (= 1.2-1), freeglut-shlibs, blt-shlibs BuildDepends: libpng3, freeglut, db43-ssl (= 4.3.29-1001)|db43 (= 4.3.29-1001), readline (= 4.3-1028), gdbm3, expat, tcltk-dev, blt Conflicts: pymol, pymol-py22, pymol-py23, pymol-py24 --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/shells zsh.info,1.5,1.6
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv5003 Modified Files: zsh.info Log Message: explicitly added multibyte support configure option Index: zsh.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/shells/zsh.info,v retrieving revision 1.5 retrieving revision 1.6 diff -u -d -r1.5 -r1.6 --- zsh.info3 Mar 2006 04:30:19 - 1.5 +++ zsh.info11 Mar 2006 15:04:57 - 1.6 @@ -1,6 +1,6 @@ Package: zsh Version: 4.3.2 -Revision: 1001 +Revision: 1002 Depends: libiconv, pcre-shlibs, libncurses5-shlibs (= 5.4-20041023-1006) BuildDepends: libiconv-dev, pcre, pcre-bin, libncurses5 (= 5.4-20041023-1006) CustomMirror: @@ -27,7 +27,7 @@ Source-MD5: e13fc4bb338fbb27ef7508a474310c8f Source2: mirror:custom:%n-%v-doc.tar.bz2 Source2-MD5: 69d1ab9d179d7d16eb0251a0a60e0457 -ConfigureParams: --mandir=%p/share/man --infodir=%p/share/info --enable-etcdir=%p/etc/%n --enable-maildir-support --enable-pcre --enable-zsh-secure-free --enable-fndir=%p/share/%n --enable-function-subdirs --with-curses-terminfo --with-tcsetpgrp +ConfigureParams: --mandir=%p/share/man --infodir=%p/share/info --enable-etcdir=%p/etc/%n --enable-maildir-support --enable-pcre --enable-zsh-secure-free --enable-fndir=%p/share/%n --enable-function-subdirs --with-curses-terminfo --with-tcsetpgrp --enable-multibyte CompileScript: perl -pi.bak -e s;DL_EXT=so;DL_EXT=dylib;g configure ./configure %c --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci rnaview.info,NONE,1.1
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv1206 Added Files: rnaview.info Log Message: program to analyze RNA tertiary structural contacts --- NEW FILE: rnaview.info --- Package: rnaview Version: 1.0 Revision: 1 Source: http://ndbserver.rutgers.edu/ftp/NDB/programs/rna/RNAVIEW.tar.gz Source-MD5: 8c7c5512e889fe163c45827368cb07fc SourceDirectory: RNAVIEW CompileScript: #!/bin/zsh -ef /bin/rm -f bin/rnaview make /bin/rm -f **/*.o InstallScript: #!/bin/zsh -ef mkdir -p %i/bin cp bin/rnaview %i/bin/rnaview mkdir -p %i/share/rnaview cp -R * %i/share/rnaview/. RunTimeVars: RNAVIEW: %p/share/rnaview DOCFILES: README Description: RNA tertiary structure plots DescDetail: The RNAView program generates 2-dimensional displays of RNA/DNA secondary structures with tertiary interactions. RNAView automatically identifies and classifies the types of base pairs that are formed in nucleic acid structures, fully implementing Leontis and Westhof's ( RNA (2001) 7, 499-512), convention for edge-to-edge hydrogen bonding interactions. Yang, H., Jossinet, F., Leontis, N., Chen, L., Westbrook, J., Berman, H.M., Westhof, E. (2003). Tools for the automatic identification and classification of RNA base pairs. Nucleic Acids Research 31.13: 3450-3460. License: GPL Maintainer: W. G. Scott [EMAIL PROTECTED] --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.3/unstable/main/finkinfo/sci clipper.info,1.8,NONE clipper.patch,1.1,NONE
Update of /cvsroot/fink/dists/10.3/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv8030 Removed Files: clipper.info clipper.patch Log Message: remove obsolete package clipper --- clipper.patch DELETED --- --- clipper.info DELETED --- --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci ccp4.info,1.7,1.8 ccp4.patch,1.4,1.5
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv12923 Modified Files: ccp4.info ccp4.patch Log Message: ccp4 10.4 unstable patch update Index: ccp4.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4.info,v retrieving revision 1.7 retrieving revision 1.8 diff -u -d -r1.7 -r1.8 --- ccp4.info 3 Mar 2006 06:54:04 - 1.7 +++ ccp4.info 23 Mar 2006 06:22:09 - 1.8 @@ -1,6 +1,6 @@ Package: ccp4 Version: 6.0 -Revision: 1002 +Revision: 1003 GCC: 4 Architecture: powerpc Source: ftp://ftp.%n.ac.uk/%n/%v.0/packed/%n-%v.0-core-src.tar.gz @@ -191,20 +191,20 @@ #lib/ccp4-6.0/libmmdb.dylib Shlibs: - %p/lib/ccp4-6.0/libccif.dylib 0.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libccp4c.dylib 0.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libjwc_c.0.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libjwc_c.0.1.1.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libjwc_c.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libxdl_view.2.dylib 3.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libxdl_view.2.0.0.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libxdl_view.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libxdl_viewextra.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libxdl_viewextra.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libxdl_viewextra.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libssm.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libssm.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libssm.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) + %p/lib/ccp4-6.0/libccif.dylib 0.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libccp4c.dylib 0.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libjwc_c.0.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libjwc_c.0.1.1.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libjwc_c.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libxdl_view.2.dylib 3.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libxdl_view.2.0.0.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libxdl_view.dylib 2.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libxdl_viewextra.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libxdl_viewextra.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libxdl_viewextra.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libssm.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libssm.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1003) + %p/lib/ccp4-6.0/libssm.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1003) DocFiles: CHANGES COPYING INSTALL INSTALL.html INSTALL.ps README PROBLEMS academic_software_licence.pdf Description: Essential dynamic libraries for CCP4 @@ -213,7 +213,7 @@ for ccp4. It excludes the clipper dynamic libraries, which may be buggy. -# %p/lib/ccp4-6.0/libmmdb.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) +# %p/lib/ccp4-6.0/libmmdb.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1003) # SplitOff2: @@ -251,27 +251,27 @@ lib/ccp4-6.0/libclipper-phs.dylib Shlibs: - %p/lib/ccp4-6.0/libclipper-ccp4.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-ccp4.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-ccp4.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-cif.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-cif.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-cif.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-contrib.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-contrib.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-contrib.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-core.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-core.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-core.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-minimol.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-minimol.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-minimol.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-mmdb.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-mmdb.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-mmdb.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-phs.0.dylib 1.0.0 ccp4lib-shlibs (= 6.0-1002) - %p/lib/ccp4-6.0/libclipper-phs.0.0.0.dylib 1.0.0 ccp4lib-shlibs (=
dists/10.4/unstable/main/finkinfo/sci ccp4-onlylibs-dev.patch,NONE,1.1 ccp4-onlylibs-dev.info,1.8,1.9
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv13458
Modified Files:
ccp4-onlylibs-dev.info
Added Files:
ccp4-onlylibs-dev.patch
Log Message:
ccp4-onlylibs.dev 10.4 unstable patch update
--- NEW FILE: ccp4-onlylibs-dev.patch ---
diff -ruN ccp4-onlylibs-dev-orig/lib/clipper/clipper/core/derivs.h
ccp4-onlylibs-dev/lib/clipper/clipper/core/derivs.h
--- ccp4-onlylibs-dev-orig/lib/clipper/clipper/core/derivs.h2005-09-08
13:07:42.0 -0700
+++ ccp4-onlylibs-dev/lib/clipper/clipper/core/derivs.h 2006-03-22
21:17:07.0 -0800
@@ -169,7 +169,7 @@
templateclass T Curv_orthT Curv_fracT::curv_orth( const Cell cell )
const
{
Mat33T m( cell.matrix_frac() );
-return Curv_fracT( m.transpose() * (*this) * m );
+return Curv_orthT( m.transpose() * (*this) * m );
}
/*! \param g The grid concerned \return The transformed derivative. */
diff -ruN ccp4-onlylibs-dev-orig/lib/clipper/clipper/core/derivs.h.orig
ccp4-onlylibs-dev/lib/clipper/clipper/core/derivs.h.orig
--- ccp4-onlylibs-dev-orig/lib/clipper/clipper/core/derivs.h.orig
1969-12-31 16:00:00.0 -0800
+++ ccp4-onlylibs-dev/lib/clipper/clipper/core/derivs.h.orig2005-09-08
13:07:42.0 -0700
@@ -0,0 +1,211 @@
+/*! \file lib/derivs.h
+Fundamental types for the clipper libraries
+*/
+//C Copyright (C) 2000-2004 Kevin Cowtan and University of York
+//C Copyright (C) 2000-2005 Kevin Cowtan and University of York
+
+//L This code is distributed under the terms and conditions of the
+//L CCP4 Program Suite Licence Agreement as a CCP4 Library.
+//L A copy of the CCP4 licence can be obtained by writing to the
+//L CCP4 Secretary, Daresbury Laboratory, Warrington WA4 4AD, UK.
+
+#ifndef CLIPPER_DERIVS
+#define CLIPPER_DERIVS
+
+
+#include coords.h
+
+
+namespace clipper
+{
+ templateclass T class Grad_orth;
+ templateclass T class Grad_frac;
+ templateclass T class Grad_map;
+ templateclass T class Curv_orth;
+ templateclass T class Curv_frac;
+ templateclass T class Curv_map;
+
+
+ //! orthogonal (Angstom) gradient, with respect to orthogonal x,y,z
+ templateclass T class Grad_orth : public Vec3T
+ {
+ public:
+Grad_orth() {} //! null constructor
+explicit Grad_orth( const Vec3T v ) :
+ Vec3T( v ) {} //! constructor: copy/convert
+Grad_orth( const T dx, const T dy, const T dz ) :
+ Vec3T( dx, dy, dz ) {} //! constructor: from d/dx,d/dy,d/dz
+const T dx() const { return (*this)[0]; } //! get d/dx
+const T dy() const { return (*this)[1]; } //! get d/dy
+const T dz() const { return (*this)[2]; } //! get d/dz
+//! orthogonal-fractional derivative conversion
+Grad_fracT grad_frac( const Cell cell ) const;
+String format() const; //! return formatted String representation
+ };
+
+
+ //! fractional (cell) gradient, with respect to fractional u,v,w
+ templateclass T class Grad_frac : public Vec3T
+ {
+ public:
+Grad_frac() {} //! null constructor
+explicit Grad_frac( const Vec3T v ) :
+ Vec3T( v ) {} //! constructor: copy/convert
+Grad_frac( const T du, const T dv, const T dw ) :
+ Vec3T( du, dv, dw ) {} //! constructor: from d/du,d/dv,d/dw
+const T du() const { return (*this)[0]; } //! get d/du
+const T dv() const { return (*this)[1]; } //! get d/dv
+const T dw() const { return (*this)[2]; } //! get d/dw
+//! fractional-orthogonal derivative conversion
+Grad_orthT grad_orth( const Cell cell ) const;
+//! fractional-grid derivative conversion
+Grad_mapT grad_map( const Grid g ) const;
+String format() const; //! return formatted String representation
+ };
+
+
+ //! map coordinate gradient, with respect to grid u,v,w
+ templateclass T class Grad_map : public Vec3T
+ {
+ public:
+Grad_map() {} //! null constructor
+explicit Grad_map( const Vec3T v ) :
+ Vec3T( v ) {} //! constructor: copy/convert
+Grad_map( const T du, const T dv, const T dw ) :
+ Vec3T( du, dv, dw ) {} //! constructor: from d/du,d/dv,d/dw
+const T du() const { return (*this)[0]; } //! get d/du
+const T dv() const { return (*this)[1]; } //! get d/dv
+const T dw() const { return (*this)[2]; } //! get d/dw
+//! grid-fractional derivative conversion
+Grad_fracT grad_frac( const Grid g ) const;
+String format() const; //! return formatted String representation
+ };
+
+
+ //! orthogonal (Angstom) curvatures, with respect to orthogonal x,y,z
+ templateclass T class Curv_orth : public Mat33T
+ {
+ public:
+Curv_orth() {} //! null constructor
+explicit Curv_orth( const Mat33T m ) :
+ Mat33T( m ) {} //! constructor: copy/convert
+//! orthogonal-fractional derivative conversion
+Curv_fracT curv_frac( const Cell cell ) const;
+ };
+
+
+ //! fractional (cell)
dists/10.4/unstable/main/finkinfo/sci bundle-ccp4.info,1.1,1.2
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv14113 Modified Files: bundle-ccp4.info Log Message: bundle-ccp4 10.4 unstable patch update Index: bundle-ccp4.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/bundle-ccp4.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- bundle-ccp4.info27 Feb 2006 22:57:32 - 1.1 +++ bundle-ccp4.info23 Mar 2006 06:24:23 - 1.2 @@ -1,16 +1,16 @@ Package: bundle-ccp4 Version: 6.0 -Revision: 1 +Revision: 2 Description: Complete CCP4 crystallographic program set Maintainer: W. G. Scott [EMAIL PROTECTED] Homepage: http://www.ccp4.ac.uk/ Type: bundle Depends: -ccp4 (= 6.0-1002), +ccp4 (= 6.0-1003), cctbx (= 51021-1001), cgraph (= 2.04-1), chooch, -clipper-bin (= 6.0-1005), +clipper-bin (= 6.0-1011), coot (= 0.1.0-pre-3-1006), mosflm (= 6.2.5-1006) | mosflm-small (= 6.2.5-1006) --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci coot.info,1.17,1.18
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv8164 Modified Files: coot.info Log Message: removed surious line from coot.info Index: coot.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.17 retrieving revision 1.18 diff -u -d -r1.17 -r1.18 --- coot.info 4 Mar 2006 00:59:22 - 1.17 +++ coot.info 25 Mar 2006 15:11:01 - 1.18 @@ -46,7 +46,6 @@ FLIBS=-L%p/lib \ CPPFLAGS=-I$CCP4/lib/clipper/clipper/mmdbold \ LDFLAGS=-L$CLIB -L/usr/lib -lSystemStubs -flat_namespace -L%p/lib \ -FC=%p/bin/g77 \ CXX=/usr/bin/g++-3.3 \ CC=/usr/bin/gcc \ py_path=%p/bin/python \ --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci coot.info,1.18,1.19
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv16231 Modified Files: coot.info Log Message: coot version upgrade Index: coot.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.18 retrieving revision 1.19 diff -u -d -r1.18 -r1.19 --- coot.info 25 Mar 2006 15:11:01 - 1.18 +++ coot.info 28 Mar 2006 06:33:21 - 1.19 @@ -1,10 +1,10 @@ Package:coot -Version: 0.1.0-pre-3 -Revision: 105 +Version: 0.1.0-pre-4 +Revision: 328 GCC: 3.3 -#Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz -Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz -Source-MD5: 6cb82b1069c1975ae05c7215e848af27 +Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz +#Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz +Source-MD5: 63a33c9a9d95a343b3472724ac251218 SourceDirectory: %n-%v Source2: http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6 @@ -13,7 +13,7 @@ ### BuildDepends: ccp4-onlylibs-dev, glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24, python # -Depends: guile16-shlibs, gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (= 2.3.16-2), coot-shlibs (= %v-%r), python24, python +Depends: guile16-shlibs, gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (= 2.3.16-2), coot-shlibs (= %v-%r), python24, python, imlib-shlibs, libjpeg-shlibs, giflib-shlibs, libpng3-shlibs, glib-shlibs, gtk+2-shlibs, fftw-shlibs # BuildDependsOnly: false NoSetLDFLAGS: true @@ -21,7 +21,7 @@ Description: Crystallographic molecular graphics DescDetail: Coot stands for Crystallograhic Object Oriented Toolkit. It is a testbest -toolkit for (Protein) Crystallography. Coot uses professional (and free) +toolkit for macromolecular crystallography. Coot uses professional (and free) widgets (with the gui builder glade), mmdb, clipper, and OpenGL, together with a new approach to map contouring and importing/creation and other (modelling) operations. The mmdb, clipper, ssm and mccp4 libraries are now @@ -50,6 +50,7 @@ CC=/usr/bin/gcc \ py_path=%p/bin/python \ ./configure %c +rm src/coot_wrap_python.cc # make --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci coot.info,1.7,1.8
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv6212 Modified Files: coot.info Log Message: coot version change Index: coot.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.7 retrieving revision 1.8 diff -u -d -r1.7 -r1.8 --- coot.info 4 Mar 2006 05:28:23 - 1.7 +++ coot.info 29 Mar 2006 05:39:53 - 1.8 @@ -1,10 +1,10 @@ Package:coot -Version: 0.1.0-pre-3 -Revision: 1007 +Version: 0.1.0-pre-4 +Revision: 1001 GCC: 4.0 -#Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz -Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz -Source-MD5: 6cb82b1069c1975ae05c7215e848af27 +Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz +#Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz +Source-MD5: 63a33c9a9d95a343b3472724ac251218 SourceDirectory: %n-%v Source2: http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6 @@ -13,7 +13,7 @@ ### BuildDepends: ccp4-onlylibs-dev (= 6.0-1005), glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24, python # -Depends: guile16-shlibs, gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (= 2.3.16-2), coot-shlibs (= %v-%r), python24, python +Depends: guile16-shlibs, gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (= 2.3.16-2), coot-shlibs (= %v-%r), python24, python, imlib-shlibs, libjpeg-shlibs, giflib-shlibs, libpng3-shlibs, glib-shlibs, gtk+2-shlibs, fftw-shlibs # BuildDependsOnly: false NoSetLDFLAGS: true --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci coot.info,1.8,1.9
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv10521 Modified Files: coot.info Log Message: coot version change,fixed Index: coot.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.8 retrieving revision 1.9 diff -u -d -r1.8 -r1.9 --- coot.info 29 Mar 2006 05:39:53 - 1.8 +++ coot.info 29 Mar 2006 13:00:38 - 1.9 @@ -51,6 +51,7 @@ CC=/usr/bin/gcc \ py_path=%p/bin/python \ ./configure %c +rm src/coot_wrap_python.cc # make --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci ccp4.info,1.10,1.11 ccp4.patch,1.7,1.8
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv16011
Modified Files:
ccp4.info ccp4.patch
Log Message:
ccp4 patch upgrade
Index: ccp4.info
===
RCS file:
/cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/ccp4.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- ccp4.info 23 Feb 2006 19:38:06 - 1.10
+++ ccp4.info 30 Mar 2006 03:36:27 - 1.11
@@ -1,6 +1,6 @@
Package: ccp4
Version: 6.0
-Revision: 1
+Revision: 3
GCC: 3.3
Source: ftp://ftp.%n.ac.uk/%n/%v.0/packed/%n-%v.0-core-src.tar.gz
Source2: ftp://ftp.%n.ac.uk/%n/%v.0/packed/phaser-1.3.2-cctbx-src.tar.gz
@@ -279,7 +279,7 @@
License agreement is part of configure file -- print out form and mail in,
additional comments at http://chemistry.ucsc.edu/~wgscott/xtal/ccp4.html
CCP4 files will be installed under /sw/share/xtal/ccp4-6.0
-This revision includes all available CCP4 patches as of December 1, 2005.
+This revision includes all available CCP4 patches as of March 27, 2006.
and new bash and zsh command completions specific to ccp4.
DocFiles: README CHANGES COPYING PROBLEMS INSTALL INSTALL.html INSTALL.ps
ccp4i_installation.html academic_software_licence.pdf
academic_software_licence.ps.gz academic_software_licence.rtf
Index: ccp4.patch
===
RCS file:
/cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/ccp4.patch,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- ccp4.patch 23 Feb 2006 19:38:06 - 1.7
+++ ccp4.patch 30 Mar 2006 03:36:28 - 1.8
@@ -192,6 +192,18 @@
}
#d_index_title Interaction with Netscape
+diff -ruN ccp4-6.0-orig/ccp4i/templates/molrep.com
ccp4-6.0/ccp4i/templates/molrep.com
+--- ccp4-6.0-orig/ccp4i/templates/molrep.com 2005-11-07 08:52:31.0
-0800
ccp4-6.0/ccp4i/templates/molrep.com2006-03-22 14:25:46.0
-0800
+@@ -136,7 +136,7 @@
+ {[IfSet $FUNCTION] ![StringSame $FUNCTION A]} FUN $FUNCTION
+ ENDIF
+
+-{[IfSet $MODEL_CORRECTION] ![StringSame $MODEL_CORRECTION N] } SURF
$MODEL_CORRECTION
++1 SURF $MODEL_CORRECTION
+
+ IF { $NMONOMERS 0 }
+ { [IfSet $NMONOMERS] } NMON $NMONOMERS
diff -ruN ccp4-6.0-orig/configure ccp4-6.0/configure
--- ccp4-6.0-orig/configure2006-02-08 08:28:03.0 -0800
+++ ccp4-6.0/configure 2006-02-21 07:54:22.0 -0800
@@ -700,13 +712,907 @@
+
diff -ruN ccp4-6.0-orig/lib/cctbx/cctbx_install_script.csh
ccp4-6.0/lib/cctbx/cctbx_install_script.csh
--- ccp4-6.0-orig/lib/cctbx/cctbx_install_script.csh 2005-11-08
09:06:57.0 -0800
-+++ ccp4-6.0/lib/cctbx/cctbx_install_script.csh2006-02-21
08:13:32.0 -0800
-@@ -29,7 +29,7 @@
- set build_mode=release
ccp4-6.0/lib/cctbx/cctbx_install_script.csh2006-02-26
08:36:24.0 -0800
+@@ -1,232 +1,5 @@
+-#! /bin/csh -f
++#! /bin/sh -ef
- if (`uname` == Darwin) then
+-set install_root=$cwd
+-set bundle=cctbx
+-set sources=$cwd/${bundle}_sources
+-set build=$cwd/${bundle}_build
+-set prefer_usr_bin_python=0
++echo Skipping final build of cctbx
++echo Install fink's cctbx package if you need this
+
+-unalias cat
+-unalias cd
+-unalias grep
+-unalias ls
+-unalias mkdir
+-
+-unsetenv PYTHONHOME
+-
+-if (-f $sources/TAG) then
+- echo Build tag:
+- cat $sources/TAG
+-endif
+-
+-if (-d $sources/boost) then
+- set have_sources=1
+-else
+- set have_sources=0
+-endif
+-
+-set python_exe=None
+-set build_mode=release
+-
+-if (`uname` == Darwin) then
- set
python_exe=/Library/Frameworks/Python.framework/Versions/2.3/bin/python
+- if (! -x $python_exe) then
+-set python_exe=/System$python_exe
+- endif
+- $python_exe -V
+- if ($status != 0) then
+-echo Under Mac OS 10 Python 2.3 must be pre-installed.
+-echo Please refer to the following web page for more information:
+-echo http://cci.lbl.gov/cctbx_build/mac_os_x_notes.html;
+-exit 1
+- endif
+-endif
+-
+-if ($have_sources == 0) then
+-
+- if (-d $build/python) then
+-set python_exe=$build/python/bin/python
+- endif
+- if ($prefer_usr_bin_python) then
+-if ($python_exe == None -x /usr/bin/python) then
+- /usr/bin/python -V | head -1
+- if ($status == 0) then
+-set python_exe=/usr/bin/python
+- endif
+-endif
+- endif
+- if ($python_exe == None) then
+-python -V | head -1
+-if ($status == 0) then
+- set python_exe=python
+-endif
+- endif
+- if (! $prefer_usr_bin_python) then
+-if ($python_exe == None -x /usr/bin/python) then
+- /usr/bin/python -V | head -1
+- if ($status == 0) then
+-set python_exe=/usr/bin/python
+- endif
+-endif
+- endif
+-
+-else
+-
+- if ($#argv == 0) then
+-echo -n Please enter the number of available CPU's [1]:
+-set
dists/10.4-transitional/unstable/main/finkinfo/sci coot.info,1.19,1.20
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv1880 Modified Files: coot.info Log Message: coot version update Index: coot.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.19 retrieving revision 1.20 diff -u -d -r1.19 -r1.20 --- coot.info 28 Mar 2006 06:33:21 - 1.19 +++ coot.info 6 Apr 2006 16:32:10 - 1.20 @@ -1,10 +1,10 @@ Package:coot -Version: 0.1.0-pre-4 -Revision: 328 +Version: 0.1 +Revision: 1 GCC: 3.3 -Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz +Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-%v.tar.gz #Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz -Source-MD5: 63a33c9a9d95a343b3472724ac251218 +Source-MD5: f983b327ac7d80446efc38c375873a08 SourceDirectory: %n-%v Source2: http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6 --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci coot.info,1.9,1.10
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv21741 Modified Files: coot.info Log Message: coot update Index: coot.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.9 retrieving revision 1.10 diff -u -d -r1.9 -r1.10 --- coot.info 29 Mar 2006 13:00:38 - 1.9 +++ coot.info 6 Apr 2006 22:24:07 - 1.10 @@ -1,17 +1,17 @@ Package:coot -Version: 0.1.0-pre-4 +Version: 0.1 Revision: 1001 GCC: 4.0 -Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz +Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-%v.tar.gz #Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz -Source-MD5: 63a33c9a9d95a343b3472724ac251218 +Source-MD5: f983b327ac7d80446efc38c375873a08 SourceDirectory: %n-%v Source2: http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6 Source3: http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz Source3-MD5: c09bb6b5524901cb0fde14589546224e ### -BuildDepends: ccp4-onlylibs-dev (= 6.0-1005), glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24, python +BuildDepends: ccp4-onlylibs-dev (= 6.0-1011), glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24, python # Depends: guile16-shlibs, gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (= 2.3.16-2), coot-shlibs (= %v-%r), python24, python, imlib-shlibs, libjpeg-shlibs, giflib-shlibs, libpng3-shlibs, glib-shlibs, gtk+2-shlibs, fftw-shlibs # @@ -45,10 +45,9 @@ export PYTHONPATH= FLIBS=-L%p/lib \ CPPFLAGS=-I$CCP4/lib/clipper/clipper/mmdbold \ -LDFLAGS=-L$CLIB -L/usr/lib -lSystemStubs -flat_namespace -L%p/lib -L%p/lib/python2.4/config \ -FC=%p/bin/g77 \ -CXX=/usr/bin/g++ \ -CC=/usr/bin/gcc \ +LDFLAGS=-L$CLIB -L/usr/lib -lSystemStubs -flat_namespace -L%p/lib/python2.4/config \ +CXX=g++ \ +CC=gcc \ py_path=%p/bin/python \ ./configure %c rm src/coot_wrap_python.cc @@ -79,9 +78,10 @@ # mkdir -p %i/share/coot/etc mkdir -p %i/share/coot/python +cp src/coot.py %i/share/coot/python/coot.py cp -R setup %i/share/coot/. cp -R ../lib %i/share/coot/. -# cp %i/share/coot/src/coot.py %i/share/coot/python/. +# cp %i/share/coot/etc/python/coot.py %i/share/coot/python/. # Reference structures should be in %i/share/coot/reference-structures cp -R ../reference-structures %i/share/coot/. cp -R * %i/share/coot/etc/. --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci coot.info,1.20,1.21
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv3599 Modified Files: coot.info Log Message: coot version update Index: coot.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.20 retrieving revision 1.21 diff -u -d -r1.20 -r1.21 --- coot.info 6 Apr 2006 16:32:10 - 1.20 +++ coot.info 6 Apr 2006 22:45:18 - 1.21 @@ -1,11 +1,12 @@ Package:coot -Version: 0.1 +Version: 0.1.0.0 Revision: 1 GCC: 3.3 -Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-%v.tar.gz +Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-0.1.tar.gz +SourceRename: %n-%v.tar.gz #Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz Source-MD5: f983b327ac7d80446efc38c375873a08 -SourceDirectory: %n-%v +SourceDirectory: %n-0.1 Source2: http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6 Source3: http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci coot.info,1.10,1.11
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv5061 Modified Files: coot.info Log Message: coot update-0.1.0.0 Index: coot.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.10 retrieving revision 1.11 diff -u -d -r1.10 -r1.11 --- coot.info 6 Apr 2006 22:24:07 - 1.10 +++ coot.info 6 Apr 2006 22:47:38 - 1.11 @@ -1,11 +1,12 @@ Package:coot -Version: 0.1 +Version: 0.1.0.0 Revision: 1001 GCC: 4.0 -Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-%v.tar.gz +Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-0.1.tar.gz +SourceRename: %n-%v.tar.gz #Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz Source-MD5: f983b327ac7d80446efc38c375873a08 -SourceDirectory: %n-%v +SourceDirectory: %n-0.1 Source2: http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6 Source3: http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci coot.info,1.21,1.22
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv23613 Modified Files: coot.info Log Message: coot version update Index: coot.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.21 retrieving revision 1.22 diff -u -d -r1.21 -r1.22 --- coot.info 6 Apr 2006 22:45:18 - 1.21 +++ coot.info 8 Apr 2006 01:49:26 - 1.22 @@ -1,6 +1,6 @@ Package:coot Version: 0.1.0.0 -Revision: 1 +Revision: 2 GCC: 3.3 Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-0.1.tar.gz SourceRename: %n-%v.tar.gz @@ -79,6 +79,7 @@ # mkdir -p %i/share/coot/etc mkdir -p %i/share/coot/python +cp src/coot.py %i/share/coot/python/coot.py cp -R setup %i/share/coot/. cp -R ../lib %i/share/coot/. # cp %i/share/coot/src/coot.py %i/share/coot/python/. --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci ccp4-onlylibs-dev.info,1.9,1.10
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv30429 Modified Files: ccp4-onlylibs-dev.info Log Message: ccp4-onlylibs-dev switch from gfortran to fort77 for both platforms Index: ccp4-onlylibs-dev.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4-onlylibs-dev.info,v retrieving revision 1.9 retrieving revision 1.10 diff -u -d -r1.9 -r1.10 --- ccp4-onlylibs-dev.info 23 Mar 2006 06:23:07 - 1.9 +++ ccp4-onlylibs-dev.info 9 Apr 2006 21:53:42 - 1.10 @@ -1,7 +1,7 @@ Package: ccp4-onlylibs-dev # Use version numbering to sync with the current CCP4 release: Version: 6.0 -Revision: 1011 +Revision: 1012 GCC: 4.0 #Source: ftp://ftp.ccp4.ac.uk/prerelease/%n.tar.gz #Source-MD5: cf085751833aecc7ccef9e67de7e9fcc @@ -14,7 +14,8 @@ #Source3: http://chemistry.ucsc.edu/~wgscott/xtal/clipper_%v-src.tgz #Source3-MD5: 1c7a91218a4a27af1c2506f39df4692a Depends: -BuildDepends: gcc4 (= 2:4.1.0-1) +# BuildDepends: gcc4 (= 2:4.1.0-1) +BuildDepends: fort77 BuildDependsOnly: false NoSetCPPFLAGS: true NoSetLDFLAGS: true @@ -52,7 +53,8 @@ source include/ccp4.setup-zsh export DYLD_LIBRARY_PATH=$CLIB # -FC=gfortran ./configure --onlylibs Darwin +#FC=gfortran ./configure --onlylibs Darwin +FC=fort77 ./configure --onlylibs Darwin # # fix some post-configure bugs # --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci cctbx.info,1.2,1.3
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv27224
Modified Files:
cctbx.info
Log Message:
fixed so it also works for intel
Index: cctbx.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/cctbx.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- cctbx.info 28 Mar 2006 22:19:09 - 1.2
+++ cctbx.info 11 Apr 2006 04:15:56 - 1.3
@@ -74,7 +74,7 @@
source setpaths.sh
# Find the number of cpus:
-num_cpu=$( system_profiler -detailLevel -2 | grep Number Of CPUs | awk
'{print $4}' )
+num_cpu=$( system_profiler -detailLevel -2 | grep Number Of | awk '{print
$4}' )
# On a machine with multiple CPUs enter:
libtbx.scons -j $num_cpu .
---
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dists/10.4/unstable/main/finkinfo/sci apbs.info,1.4,1.5
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv2245
Modified Files:
apbs.info
Log Message:
tweaked for intel compat
Index: apbs.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/apbs.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- apbs.info 3 Mar 2006 07:22:31 - 1.4
+++ apbs.info 11 Apr 2006 05:08:57 - 1.5
@@ -5,7 +5,7 @@
Source-MD5: a9d5f8b24a40087998267c9df3eecceb
SourceDirectory: %n-%v
Depends: maloc, readline-shlibs (= 4.3-1028), gnuplot (= 4.0.0-1002),
pdb2pqr
-BuildDepends: g77 | fort77, maloc
+BuildDepends: g77 | g95, maloc
Conflicts: apbs-mpi
Replaces: apbs-mpi
ConfigureParams: FETK_INCLUDE=%p/include FETK_LIBRARY=%p/lib FETK_PREFIX=%p
py_path=/usr/bin/python2.3
@@ -14,6 +14,9 @@
Description: Adaptive Poisson-Boltzmann Solver
CompileScript:
#!/bin/zsh -ef
+if [[ $(uname -p) == i386 ]];then
+ perl -pi -e 's|g77|g95|g' **/*
+fi
PATH=/usr/bin:$PATH
BLAS_DIR='/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A'
py_path=/usr/bin/python2.3 ./configure %c --with-blas=-L${BLAS_DIR} -lblas
-Wl,-framework -Wl,vecLib
@@ -32,7 +35,7 @@
mv examples %i/share/%n
mv tools %i/share/%n
mkdir -p %i/bin
-ln -s %p/bin/powerpc-apple-darwin$(uname -r)/apbs %i/bin/apbs
+ln -s %p/bin/$(uname -p)-apple-darwin$(uname -r)/apbs %i/bin/apbs
PostInstScript:
# per request of software's author
---
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dists/10.4/unstable/main/finkinfo/sci ccp4-gfortran.info,1.1,1.2
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv9143 Modified Files: ccp4-gfortran.info Log Message: tweaked for intel compat Index: ccp4-gfortran.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4-gfortran.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- ccp4-gfortran.info 3 Mar 2006 06:56:35 - 1.1 +++ ccp4-gfortran.info 12 Apr 2006 01:36:27 - 1.2 @@ -1,6 +1,6 @@ Package: ccp4-gfortran Version: 6.0 -Revision: 1002 +Revision: 1004 GCC: 4 Source: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/ccp4-%v.0-core-src.tar.gz Source2: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/phaser-1.3.2-cctbx-src.tar.gz @@ -10,9 +10,9 @@ Source3: http://chemistry.ucsc.edu/~wgscott/xtal/xtalfink/XCCPJiffy-custom.gz Source3-MD5: 21568dd2475505929573a3fd452c538f Depends: x11, tcltk, blt -BuildDepends: gcc4 (= 4.1.0-1), f2c, fort77, tcltk-dev +BuildDepends: gcc4 (= 4.0.3-1), f2c, fort77, tcltk-dev Replaces: mosflm (= 6.2.3-2), mosflm-small (= 6.2.3-2), refmac (= 5.1999-3), ccp4-shlibs, ccp4, ccp4-dev, bundle-ccp4, clipper-bin -Conflicts: ccp4-shlibs, ccp4, ccp4-dev, bundle-ccp4, clipper-bin +Conflicts: ccp4-shlibs, ccp4, ccp4-dev, bundle-ccp4 NoSetCPPFLAGS: true NoSetLDFLAGS: true # @@ -55,11 +55,15 @@ export PYTHONPATH=/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3 # gfortran is actually used by default, but to ensure the right thing happens, specify it. # Build static libs only for now. -FC=gfortran ./configure --with-x Darwin +FC=gfortran FOPTIM=-O0 CC=%p/lib/gcc4/bin/gcc CXX=%p/lib/gcc4/bin/g++ ./configure --with-x Darwin # FC=gfortran ./configure --with-x --with-shared-libs --with-fftw=%p Darwin # fix some post-configure bugs by getting rid of -lg2c perl -pi.bak -e 's|-lg2c||g' x-windows/**/*akefile* # +# change molrep optimization: +perl -pi.bak -e s|molrep_FLAGS='-fno-second-underscore -O1'|molrep_FLAGS='-fno-second-underscore -O0'|g src/Makefile + +perl -pi.bak -e 's|FC = g77 -fno-second-underscore||g' x-windows/XCCPJIFFY/Makefile make -i make -i install # @@ -77,7 +81,10 @@ echo ** echo # -fort77 -fno-second-underscore -o xloggraph -L/usr/lib msg_box.o ZDr2d.o EditString.o hardcopy_ctrl.o xloggraph.o log_file.o tom_fortran_interface.o bits_and_pieces.o graphics.o -g -Os -I/usr/include/X11R6 -L/usr/X11R6/lib -lXaw -lXmu -lXt -lSM -lICE -lXpm -lXext -lX11 -lm -lgcc -lSystemStubs + perl -pi.bak -e 's|FC = g77 -fno-second-underscore||g' Makefile + make -i xloggraph 2/dev/null + fort77 -o xloggraph msg_box.o ZDr2d.o EditString.o hardcopy_ctrl.o xloggraph.o log_file.o tom_fortran_interface.o bits_and_pieces.o graphics.o -g -Os -I/usr/include/X11R6 -L/usr/X11R6/lib -lXaw -lXmu -lXt -lSM -lICE -lXpm -lXext -lX11 -lm -lgfortran -L%p/lib/gcc4/lib + # sleep 10 # @@ -86,6 +93,7 @@ # # make realclean /bin/rm -f **/*.o +/bin/rm -f **/*.bak echo Compile Phase Completed! echo There are $(command ls -1 $CBIN | wc -l) programs in $CBIN; there should be 200 @@ -98,12 +106,11 @@ export DYLD_LIBRARY_PATH=$CLIB ORIGDIR=$(dirname $PWD) # Change environment scripts to match final installation -perl -pi.bak -e 's|\$TEMPXTAL|%p/share/xtal|g' include/ccp4.setup* # install prefix -# perl -pi.bak -e 's|\$TEMPXTAL|%p/share/xtal|g' lib/cctbx/cctbx_build/setpaths* +perl -pi -e 's|\$TEMPXTAL|%p/share/xtal|g' include/ccp4.setup* # install prefix # # cp ../XCCPJiffy-custom.gz XCCPJiffy.gz ; gunzip XCCPJiffy.gz; chmod a+x XCCPJiffy - perl -pi.bak -e 's|5.0.1|%v|g' XCCPJiffy + perl -pi -e 's|5.0.1|%v|g' XCCPJiffy mv -f XCCPJiffy lib/X11/app-defaults/XCCPJiffy # perl -pi.bak -e 's|/src/fink.build/ccp4-%v-%r|/share/xtal|g' bin/clipper-config @@ -188,7 +195,8 @@ DescDetail: These are the ccp4 programs compiled with gfortran instead of g77. The (currently default) g77 version won't work on intel. The hope -is that this will. +is that this will. (With gfortran-4.0.3, everything compiles except +cpirate; install that from the clipper-bin package.) CCP4 macromolecular crystallography suite has approximately 200 programs and utilities. This version included Clipper --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci bundle-ccp4-intel.info,NONE,1.1
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv10923 Added Files: bundle-ccp4-intel.info Log Message: bundle to install everything available from the CCP4 downloads page on intel --- NEW FILE: bundle-ccp4-intel.info --- Package: bundle-ccp4-intel Version: 6.0 Revision: 3 Description: Complete CCP4 crystallographic program set Maintainer: W. G. Scott [EMAIL PROTECTED] Homepage: http://www.ccp4.ac.uk/ Type: bundle Architecture: i386 Depends: ccp4-gfortran (= 6.0-1004), cctbx (= 51021-1001), cgraph (= 2.04-1), chooch, clipper-bin (= 6.0-1011), coot (= 0.1.0-pre-3-1006), DescDetail: Install a fully functional, working CCP4 distribution with all options. Bundle package to install everything available from the CCP4 downloads page, although more recent versions of cctbx, coot and mosflm are provided to keep this as current as possible. The versioning number corresponds to that of CCP4, and revisions will occur whenever any of the subsidiary packages has been updated. Therefore, simply issue fink install bundle-ccp4 to keep everything up to date. Replaces: mosflm (= 6.2.5-1005), mosflm-small (= 6.2.5-1005), refmac (= 5.2), ccp4lib, ccp4lib-shlibs, ccp4 (= 6.0-1001), ccp4-shlibs (= 6.0-1001), clipper (= 6.0-1), mmdb, mccp4, ssmlib --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci bundle-ccp4.info,1.2,NONE
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv15509 Removed Files: bundle-ccp4.info Log Message: bundle-ccp4 to be replaced by bundle-ccp4-powerpc --- bundle-ccp4.info DELETED --- --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci bundle-ccp4-powerpc.info,NONE,1.1
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv16799 Added Files: bundle-ccp4-powerpc.info Log Message: bundle to install everything available from the CCP4 downloads page on powerpc --- NEW FILE: bundle-ccp4-powerpc.info --- Package: bundle-ccp4-powerpc Version: 6.0 Revision: 3 Description: Complete CCP4 crystallographic program set Maintainer: W. G. Scott [EMAIL PROTECTED] Homepage: http://www.ccp4.ac.uk/ Type: bundle Architecture: powerpc Depends: ccp4 (= 6.0-1003), cctbx (= 51021-1001), cgraph (= 2.04-1), chooch, clipper-bin (= 6.0-1012), coot (= 0.1.0.0-1002), mosflm (= 6.2.5-1006) | mosflm-small (= 6.2.5-1006) DescDetail: Install a fully functional, working CCP4 distribution with all options. Bundle package to install everything available from the CCP4 downloads page, although more recent versions of cctbx, coot and mosflm are provided to keep this as current as possible. The versioning number corresponds to that of CCP4, and revisions will occur whenever any of the subsidiary packages has been updated. Therefore, simply issue fink install bundle-ccp4 to keep everything up to date. Replaces: mosflm (= 6.2.5-1005), mosflm-small (= 6.2.5-1005), refmac (= 5.2), ccp4lib, ccp4lib-shlibs, ccp4 (= 6.0-1001), ccp4-shlibs (= 6.0-1001), clipper (= 6.0-1), mmdb, mccp4, ssmlib --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/gnome gtk-canvas.patch,NONE,1.1 gtk-canvas.info,1.4,1.5
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/gnome In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv7843 Modified Files: gtk-canvas.info Added Files: gtk-canvas.patch Log Message: gtk-canvas patched to correct bug in source code --- NEW FILE: gtk-canvas.patch --- diff -ruN gtk-canvas-0.1.1-orig/gtk-canvas/gtk-canvas-load.c gtk-canvas-0.1.1/gtk-canvas/gtk-canvas-load.c --- gtk-canvas-0.1.1-orig/gtk-canvas/gtk-canvas-load.c 2000-07-20 21:55:14.0 -0700 +++ gtk-canvas-0.1.1/gtk-canvas/gtk-canvas-load.c 2006-04-12 09:40:04.0 -0700 @@ -12,7 +12,7 @@ */ #include config.h #include gdk_imlib.h -#include malloc.h +# #include gtk-canvas.h #include gtk-canvas-load.h diff -ruN gtk-canvas-0.1.1-orig/gtk-canvas/gtk-canvas.c gtk-canvas-0.1.1/gtk-canvas/gtk-canvas.c --- gtk-canvas-0.1.1-orig/gtk-canvas/gtk-canvas.c 2002-11-18 02:06:17.0 -0800 +++ gtk-canvas-0.1.1/gtk-canvas/gtk-canvas.c2006-04-12 09:40:04.0 -0700 @@ -3723,7 +3723,7 @@ uta-y0 = new_y1; uta-width = new_x2 - new_x1; uta-height = new_y2 - new_y1; - uta-utiles = utiles = art_new (ArtUtaBbox, uta-width * uta-height); +uta-utiles = art_new (ArtUtaBbox, uta-width * uta-height); ofs = 0; ofs1 = ofs2 = 0; @@ -3766,7 +3766,7 @@ MAX (ART_UTA_BBOX_Y1 (bb1), ART_UTA_BBOX_Y1 (bb2))); - utiles[ofs] = bb; + uta-utiles[ofs] = bb; ofs++; ofs1++; Index: gtk-canvas.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/gnome/gtk-canvas.info,v retrieving revision 1.4 retrieving revision 1.5 diff -u -d -r1.4 -r1.5 --- gtk-canvas.info 21 Mar 2006 17:12:50 - 1.4 +++ gtk-canvas.info 12 Apr 2006 19:39:54 - 1.5 @@ -1,6 +1,6 @@ Package: gtk-canvas Version: 0.1.1 -Revision: 22 +Revision: 23 BuildDepends: gtk+, glib, libiconv-dev, gettext-dev, x11-dev, imlib, gnome-libs-dev, libart2 (= 2.3.16-2) #Depends: gtk+-shlibs, libgl, gnome-libs, gnome-libs-shlibs, imlib-shlibs, libart2-shlibs (= 2.3.16-2) BuildDependsOnly: true @@ -20,6 +20,7 @@ DescPackaging: Why does this build its own libart? + Because it appears to need to (try it without). DescUsage: Only the static library is supplied. To compile against @@ -28,7 +29,8 @@ gtk+, glib, libiconv-dev, gettext-dev, x11-dev, imlib, gnome-libs-dev, libart2 (= 2.3.16-2) -PatchScript: perl -pi -e 's/include malloc.h//g' **/*.c +#PatchScript: perl -pi -e 's/include malloc.h//g' **/*.c +Patch: %N.patch ConfigureParams: --with-gtk-prefix=%p --with-imlib-prefix=%p InstallScript: #!/bin/zsh -ef --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/gnome gtk-canvas.patch,NONE,1.1 gtk-canvas.info,1.3,1.4
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/gnome In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv11152 Modified Files: gtk-canvas.info Added Files: gtk-canvas.patch Log Message: gtk-canvas patched to correct bug in source code --- NEW FILE: gtk-canvas.patch --- diff -ruN gtk-canvas-0.1.1-orig/gtk-canvas/gtk-canvas-load.c gtk-canvas-0.1.1/gtk-canvas/gtk-canvas-load.c --- gtk-canvas-0.1.1-orig/gtk-canvas/gtk-canvas-load.c 2000-07-20 21:55:14.0 -0700 +++ gtk-canvas-0.1.1/gtk-canvas/gtk-canvas-load.c 2006-04-12 09:40:04.0 -0700 @@ -12,7 +12,7 @@ */ #include config.h #include gdk_imlib.h -#include malloc.h +# #include gtk-canvas.h #include gtk-canvas-load.h diff -ruN gtk-canvas-0.1.1-orig/gtk-canvas/gtk-canvas.c gtk-canvas-0.1.1/gtk-canvas/gtk-canvas.c --- gtk-canvas-0.1.1-orig/gtk-canvas/gtk-canvas.c 2002-11-18 02:06:17.0 -0800 +++ gtk-canvas-0.1.1/gtk-canvas/gtk-canvas.c2006-04-12 09:40:04.0 -0700 @@ -3723,7 +3723,7 @@ uta-y0 = new_y1; uta-width = new_x2 - new_x1; uta-height = new_y2 - new_y1; - uta-utiles = utiles = art_new (ArtUtaBbox, uta-width * uta-height); +uta-utiles = art_new (ArtUtaBbox, uta-width * uta-height); ofs = 0; ofs1 = ofs2 = 0; @@ -3766,7 +3766,7 @@ MAX (ART_UTA_BBOX_Y1 (bb1), ART_UTA_BBOX_Y1 (bb2))); - utiles[ofs] = bb; + uta-utiles[ofs] = bb; ofs++; ofs1++; Index: gtk-canvas.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/gnome/gtk-canvas.info,v retrieving revision 1.3 retrieving revision 1.4 diff -u -d -r1.3 -r1.4 --- gtk-canvas.info 21 Mar 2006 17:12:51 - 1.3 +++ gtk-canvas.info 12 Apr 2006 19:44:06 - 1.4 @@ -1,6 +1,6 @@ Package: gtk-canvas Version: 0.1.1 -Revision: 22 +Revision: 23 BuildDepends: gtk+, glib, libiconv-dev, gettext-dev, x11-dev, imlib, gnome-libs-dev, libart2 (= 2.3.16-2) #Depends: gtk+-shlibs, libgl, gnome-libs, gnome-libs-shlibs, imlib-shlibs, libart2-shlibs (= 2.3.16-2) BuildDependsOnly: true @@ -20,6 +20,7 @@ DescPackaging: Why does this build its own libart? + Because it appears to need to (try it without). DescUsage: Only the static library is supplied. To compile against @@ -28,7 +29,8 @@ gtk+, glib, libiconv-dev, gettext-dev, x11-dev, imlib, gnome-libs-dev, libart2 (= 2.3.16-2) -PatchScript: perl -pi -e 's/include malloc.h//g' **/*.c +#PatchScript: perl -pi -e 's/include malloc.h//g' **/*.c +Patch: %N.patch ConfigureParams: --with-gtk-prefix=%p --with-imlib-prefix=%p InstallScript: #!/bin/zsh -ef --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci coot.info,1.11,1.12
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv12034 Modified Files: coot.info Log Message: revision bump for coot to build against new gtk-canvas Index: coot.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.11 retrieving revision 1.12 diff -u -d -r1.11 -r1.12 --- coot.info 6 Apr 2006 22:47:38 - 1.11 +++ coot.info 12 Apr 2006 19:45:05 - 1.12 @@ -1,6 +1,6 @@ Package:coot Version: 0.1.0.0 -Revision: 1001 +Revision: 1003 GCC: 4.0 Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-0.1.tar.gz SourceRename: %n-%v.tar.gz @@ -34,6 +34,8 @@ #!/bin/zsh -ef perl -pi.bak -e 's|use-modules \(goosh\)|use-modules \(goosh goosh\)|g' scheme/coot-utils.scm perl -pi.bak -e 's/include malloc.h//g' **/*.c +#perl -pi -e 's|no_tips = _coot.no_tips|#no_tips = _coot.no_tips|g' src/coot.py +#perl -pi -e 's|_coot.set_ncs_homology_leve|_coot.set_ncs_homology_level|g' src/coot.py ### ConfigureParams: --with-mmdb-prefix=$CCP4 --with-clipper-prefix=$CCP4 --with-fftw=$CCP4 --with-glut-prefix=%p --with-gl-prefix=/usr/X11R6 --with-gtkcanvas-prefix=%p --with-ssmlib-prefix=$CCP4 --with-imlib-prefix=%p --with-gtkgl-prefix=%p --with-glib-prefix=%p --with-gsl-prefix=%p --with-guile --with-python --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci ccp4-gfortran.info,1.2,1.3
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv4992 Modified Files: ccp4-gfortran.info Log Message: fixed compile problem for cpirate Index: ccp4-gfortran.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4-gfortran.info,v retrieving revision 1.2 retrieving revision 1.3 diff -u -d -r1.2 -r1.3 --- ccp4-gfortran.info 12 Apr 2006 01:36:27 - 1.2 +++ ccp4-gfortran.info 17 Apr 2006 00:01:38 - 1.3 @@ -1,6 +1,6 @@ Package: ccp4-gfortran Version: 6.0 -Revision: 1004 +Revision: 1005 GCC: 4 Source: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/ccp4-%v.0-core-src.tar.gz Source2: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/phaser-1.3.2-cctbx-src.tar.gz @@ -9,8 +9,10 @@ SourceDirectory: ccp4-%v Source3: http://chemistry.ucsc.edu/~wgscott/xtal/xtalfink/XCCPJiffy-custom.gz Source3-MD5: 21568dd2475505929573a3fd452c538f +Source4: http://chemistry.ucsc.edu/~wgscott/xtal/xtalfink/ccp4_i686-apple-darwin8.6.1_libtool.gz +Source4-MD5: e40104835406c75c8aee16471b2dd06e Depends: x11, tcltk, blt -BuildDepends: gcc4 (= 4.0.3-1), f2c, fort77, tcltk-dev +BuildDepends: gcc4, f2c, fort77, tcltk-dev Replaces: mosflm (= 6.2.3-2), mosflm-small (= 6.2.3-2), refmac (= 5.1999-3), ccp4-shlibs, ccp4, ccp4-dev, bundle-ccp4, clipper-bin Conflicts: ccp4-shlibs, ccp4, ccp4-dev, bundle-ccp4 NoSetCPPFLAGS: true @@ -36,14 +38,17 @@ # Set up XCCPJiffy wrapper scripts in $CCP4/etc # These are small wrapper scripts for xplot84driver and xloggraph generated by the patch chmod a+x etc/x* -# Try to fix the dylib install path in configure +# Fix the dylib install path in configure perl -pi.bak -e 's|\$rpath|%p/lib/ccp4-%v|g' **/configure + + # We need the mmdbold clipper libraries built for COOT: +perl -pi.bak -e 's|enable_mmdbold=no|enable_mmdbold=yes|g' lib/clipper/configure* CompileScript: #!/bin/zsh -ef umask 0022 -# These are required for the build environment + # These are required for the build environment export TEMPXTAL=$PWD:h source include/ccp4.setup-zsh export DYLD_LIBRARY_PATH=$CLIB @@ -53,8 +58,8 @@ export PATH=/System/Library/Frameworks/Python.framework/Versions/Current/bin:$PATH export PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current export PYTHONPATH=/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3 -# gfortran is actually used by default, but to ensure the right thing happens, specify it. -# Build static libs only for now. + # gfortran is actually used by default, but to ensure the right thing happens, specify it. + # Build static libs only for now. (Problems with dylibs and g++-4). FC=gfortran FOPTIM=-O0 CC=%p/lib/gcc4/bin/gcc CXX=%p/lib/gcc4/bin/g++ ./configure --with-x Darwin # FC=gfortran ./configure --with-x --with-shared-libs --with-fftw=%p Darwin # fix some post-configure bugs by getting rid of -lg2c @@ -63,10 +68,21 @@ # change molrep optimization: perl -pi.bak -e s|molrep_FLAGS='-fno-second-underscore -O1'|molrep_FLAGS='-fno-second-underscore -O0'|g src/Makefile -perl -pi.bak -e 's|FC = g77 -fno-second-underscore||g' x-windows/XCCPJIFFY/Makefile +# perl -pi.bak -e 's|FC = g77 -fno-second-underscore||g' x-windows/XCCPJIFFY/Makefile + +perl -pi.bak -e 's|%p/lib/gcc4/bin/||g' lib/clipper/**/Makefile* + +# Replace the ccp4 libtool file with one that works and compiles cpirate: +cp ../ccp4_i686-apple-darwin8.6.1_libtool.gz lib/clipper/libtool.gz +mv -f lib/clipper/libtool lib/clipper/libtool-dist +gunzip lib/clipper/libtool.gz +chmod a+x lib/clipper/libtool + +# make -i make -i install -# +# + # xloggraph will fail, but we will link it with fort77 below # # Make wrappers for xplot84driver and xloggraph, so rename the executables @@ -91,11 +107,23 @@ cp xloggraph $CBIN/xloggraph.exe cd ../.. # +# Cleanup: +# # make realclean /bin/rm -f **/*.o /bin/rm -f **/*.bak +/bin/rm -R src +/bin/rm -R x-windows +/bin/rm -R unsupported +/bin/rm -R testcomp* +/bin/rm -R BINARY* +cd $CLIB +/bin/rm -f **/*.c +/bin/rm -f **/*.f +/bin/rm -f **/*.cpp echo Compile Phase Completed! -echo There are $(command ls -1 $CBIN | wc -l) programs in $CBIN; there should be 200 +echo There are $(command ls -1 $CBIN | wc -l) programs in $CBIN; +echo there should be 200 InstallScript: @@ -152,16 +180,16 @@ # making scripts for %p/etc/profile.d mkdir -p %i/etc/profile.d # - echo source %p/share/xtal/ccp4-%v/include/ccp4.setup %i/etc/profile.d/ccp4.csh + echo source %p/share/xtal/ccp4-%v/include/ccp4.setup %i/etc/profile.d/ccp4.csh echo setenv CLIB %p/lib/ccp4-%v %i/etc/profile.d/ccp4.csh # -echo
dists/10.4/unstable/main/finkinfo/sci ccp4-gfortran.info,1.3,1.4
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv10652 Modified Files: ccp4-gfortran.info Log Message: fixed compile problem for cpirate, intel arch Index: ccp4-gfortran.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4-gfortran.info,v retrieving revision 1.3 retrieving revision 1.4 diff -u -d -r1.3 -r1.4 --- ccp4-gfortran.info 17 Apr 2006 00:01:38 - 1.3 +++ ccp4-gfortran.info 17 Apr 2006 00:09:55 - 1.4 @@ -1,6 +1,7 @@ Package: ccp4-gfortran Version: 6.0 Revision: 1005 +Architecture: i386 GCC: 4 Source: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/ccp4-%v.0-core-src.tar.gz Source2: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/phaser-1.3.2-cctbx-src.tar.gz --- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci ccp4-onlylibs-dev.info,1.4,1.5
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv19940 Modified Files: ccp4-onlylibs-dev.info Log Message: fix md5sum Index: ccp4-onlylibs-dev.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/ccp4-onlylibs-dev.info,v retrieving revision 1.4 retrieving revision 1.5 diff -u -d -r1.4 -r1.5 --- ccp4-onlylibs-dev.info 4 Jan 2006 23:02:08 - 1.4 +++ ccp4-onlylibs-dev.info 25 Jan 2006 01:06:53 - 1.5 @@ -3,7 +3,7 @@ Version: 5.99.5 Revision: 1 Source: ftp://ftp.ccp4.ac.uk/prerelease/%n.tar.gz -Source-MD5: 2346cd87b1a3480d048221e2a41606c7 +Source-MD5: cf085751833aecc7ccef9e67de7e9fcc SourceRename: %n-%v.tar.gz SourceDirectory: %n Source2: http://chemistry.ucsc.edu/~wgscott/xtal/%n/%n-extras-0.1.tgz @@ -45,7 +45,7 @@ source include/ccp4.setup-zsh export DYLD_LIBRARY_PATH=$CLIB # -FLIBS=-L%p/lib -lg2c LDFLAGS=-L/usr/lib -lg2c -lSystemStubs -L%p/lib FC=%p/bin/g77 CXX=/usr/bin/g++-3.3 CC=/usr/bin/gcc configure --onlylibs Darwin +FLIBS=-L%p/lib -lg2c LDFLAGS=-L/usr/lib -lg2c -lSystemStubs -L%p/lib FC=%p/bin/g77 CXX=/usr/bin/g++-3.3 CC=/usr/bin/gcc ./configure --onlylibs Darwin # # fix some post-configure bugs # --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci ccp4.info,1.7,1.8
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv16893 Modified Files: ccp4.info Log Message: fix for compile error Index: ccp4.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/ccp4.info,v retrieving revision 1.7 retrieving revision 1.8 diff -u -d -r1.7 -r1.8 --- ccp4.info 4 Jan 2006 07:32:06 - 1.7 +++ ccp4.info 26 Jan 2006 21:11:57 - 1.8 @@ -10,8 +10,8 @@ Source3-MD5: 21568dd2475505929573a3fd452c538f Depends: x11, tcltk, blt, ccp4-shlibs (= %v-%r) BuildDepends: g77 (= 3.4.0-2), f2c, fort77, tcltk-dev -Replaces: mosflm (= 6.2.3-2), mosflm-small (= 6.2.3-2), refmac (= 5.1999-3), ccp4lib, ccp4lib-shlibs -Conflicts: ccp4lib, ccp4lib-shlibs +Replaces: mosflm (= 6.2.3-2), mosflm-small (= 6.2.3-2), refmac (= 5.1999-3), ccp4lib, ccp4lib-shlibs, ccp4 (= 5.0.2-299 ) +Conflicts: ccp4lib, ccp4lib-shlibs, ccp4 (= 5.0.2-299 ) NoSetCPPFLAGS: true NoSetLDFLAGS: true # @@ -41,6 +41,7 @@ export TEMPXTAL=$PWD:h source include/%n.setup-zsh export DYLD_LIBRARY_PATH=$CLIB +export PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current ./configure --with-x --with-shared-libs --with-fftw=%p Darwin # fix some post-configure bugs perl -pi.bak -e 's/EXTRA_LOAD_FLAGS = -lg2c//g' **/*akefile @@ -70,7 +71,8 @@ cp xloggraph $CBIN/xloggraph.exe cd ../.. # -make realclean +# make realclean +/bin/rm -f **/*.o InstallScript: #!/bin/zsh -ef @@ -81,7 +83,7 @@ ORIGDIR=$(dirname $PWD) # Change environment scripts to match final installation perl -pi.bak -e 's|\$TEMPXTAL|%p/share/xtal|g' include/%n.setup* # install prefix -perl -pi.bak -e 's|\$TEMPXTAL|%p/share/xtal|g' lib/cctbx/cctbx_build/setpaths* +# perl -pi.bak -e 's|\$TEMPXTAL|%p/share/xtal|g' lib/cctbx/cctbx_build/setpaths* # # cp ../XCCPJiffy-custom.gz XCCPJiffy.gz ; gunzip XCCPJiffy.gz; chmod a+x XCCPJiffy @@ -133,9 +135,9 @@ # chmod a+x %i/etc/profile.d/%n.* # - chmod a+x %i/share/xtal/%n-%v/ccp4i/bin/osx_ccp4_mail + chmod a+x %i/share/xtal/%n-%v/ccp4i/etc/osx_ccp4_mail # - chmod a+x %i/share/xtal/%n-%v/etc/ccp4help +# chmod a+x %i/share/xtal/%n-%v/etc/ccp4help # ranlib %i/lib/%n-%v/*.a ranlib %i/lib/%n-%v/**/*.a --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci cctbx.info,1.3,1.4
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv19168 Modified Files: cctbx.info Log Message: fix for compile error Index: cctbx.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/cctbx.info,v retrieving revision 1.3 retrieving revision 1.4 diff -u -d -r1.3 -r1.4 --- cctbx.info 14 Jan 2006 00:42:19 - 1.3 +++ cctbx.info 27 Jan 2006 00:17:58 - 1.4 @@ -1,10 +1,10 @@ Package:cctbx Version: 51021 Revision: 1 -GCC: 3.3 BuildDependsOnly: false NoSourceDirectory: true NoSetLDFLAGS: true +NoSetCPPFLAGS: true Source: http://cci.lbl.gov/cctbx_build/results/2005_10_21_1046/cctbx_python_242_bundle.tar.gz Source-MD5: 3b7c5fe0a23415b848504305dbe08ff9 Description: Computational Crystallography Toolbox @@ -60,7 +60,7 @@ writing established file formats. CompileScript: -#!/bin/zsh -ef +#!/bin/sh -ef mkdir cctbx_build cd cctbx_build # requires a Framwork python build @@ -79,15 +79,15 @@ libtbx.scons -j $num_cpu . InstallScript: -#!/bin/zsh -ef -perl -pi.bak -e 's|prepend|append|g' cctbx_build/setpaths.*sh +perl -pi.bak -e 's|prepend|append|g' %n_build/setpaths.csh +perl -pi.bak -e 's|prepend|append|g' %n_build/setpaths.sh mkdir -p %i/share/xtal/%n cp -R * %i/share/xtal/%n/. # # Set up startup scripts mkdir -p %i/etc/profile.d -echo source %p/share/xtal/%n/%n_build/setpaths.sh | %i/etc/profile.d/%n.sh -echo source %p/share/xtal/%n/%n_build/setpaths.csh | %i/etc/profile.d/%n.csh +echo source %p/share/xtal/%n/%n_build/setpaths.sh %i/etc/profile.d/%n.sh +echo source %p/share/xtal/%n/%n_build/setpaths.csh %i/etc/profile.d/%n.csh chmod a+x %i/etc/profile.d/%n.* PostInstScript: --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/stable/main/finkinfo/sci molmol.info,1.3,1.4 molmol.patch,1.1,1.2
Update of /cvsroot/fink/dists/10.4-transitional/stable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv571 Modified Files: molmol.info molmol.patch Log Message: removed dependency on gcc-3.3 Index: molmol.patch === RCS file: /cvsroot/fink/dists/10.4-transitional/stable/main/finkinfo/sci/molmol.patch,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- molmol.patch14 Jun 2005 20:12:49 - 1.1 +++ molmol.patch28 Jan 2006 03:27:01 - 1.2 @@ -29,9 +29,9 @@ + +CPP = /usr/bin/cpp + -+MCPPFLAGS = $(MISSFUNC) -I/usr/X11R6/include [EMAIL PROTECTED]@/include -no-cpp-precomp -bind_at_load ++MCPPFLAGS = -DMAXINT=INT_MAX -I/usr/X11R6/include [EMAIL PROTECTED]@/include -no-cpp-precomp -bind_at_load + -+CC = /usr/bin/gcc-3.3 ++CC = /usr/bin/gcc + +MCFLAGS = -O -bind_at_load + Index: molmol.info === RCS file: /cvsroot/fink/dists/10.4-transitional/stable/main/finkinfo/sci/molmol.info,v retrieving revision 1.3 retrieving revision 1.4 diff -u -d -r1.3 -r1.4 --- molmol.info 20 Jan 2006 16:37:56 - 1.3 +++ molmol.info 28 Jan 2006 03:27:01 - 1.4 @@ -1,6 +1,6 @@ Package: molmol Version: 2k.2.0 -Revision: 20 +Revision: 32 Architecture: powerpc CustomMirror: eur-CH: ftp://ftp.mol.biol.ethz.ch/software/MOLMOL/ @@ -11,8 +11,8 @@ SourceDirectory: ../%f Source2: mirror:custom:unix-gzip/%n-%v-doc.tar.gz Source2-MD5: 517545b60b0179ab691a679ed29903a7 -Depends: x11, glut-shlibs, openmotif3-shlibs, libtiff-shlibs, libjpeg-shlibs, libpng3-shlibs -BuildDepends: glut, openmotif3-shlibs, openmotif3, libtiff, libjpeg, libpng3, x11-dev, gcc3.3 +Depends: x11, freeglut-shlibs, openmotif3-shlibs, libtiff-shlibs, libjpeg-shlibs, libpng3-shlibs +BuildDepends: freeglut, openmotif3-shlibs, openmotif3, libtiff, libjpeg, libpng3, x11-dev PatchScript: chmod -R +w * sed 's|@PREFIX@|%p|g' %a/%n.patch | patch -p1 @@ -21,6 +21,8 @@ make InstallScript: +#!/bin/zsh -ef + /bin/rm -f **/*.o **/*.c mkdir -p %i/share/molmol cp -R * %i/share/molmol/. mkdir -p %i/bin --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci molmol.info,1.6,1.7 molmol.patch,1.1,1.2
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv839 Modified Files: molmol.info molmol.patch Log Message: removed dependency on gcc-3.3 Index: molmol.patch === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/molmol.patch,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- molmol.patch28 May 2005 19:06:43 - 1.1 +++ molmol.patch28 Jan 2006 03:27:36 - 1.2 @@ -29,9 +29,9 @@ + +CPP = /usr/bin/cpp + -+MCPPFLAGS = $(MISSFUNC) -I/usr/X11R6/include [EMAIL PROTECTED]@/include -no-cpp-precomp -bind_at_load ++MCPPFLAGS = -DMAXINT=INT_MAX -I/usr/X11R6/include [EMAIL PROTECTED]@/include -no-cpp-precomp -bind_at_load + -+CC = /usr/bin/gcc-3.3 ++CC = /usr/bin/gcc + +MCFLAGS = -O -bind_at_load + Index: molmol.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/molmol.info,v retrieving revision 1.6 retrieving revision 1.7 diff -u -d -r1.6 -r1.7 --- molmol.info 20 Jan 2006 15:20:36 - 1.6 +++ molmol.info 28 Jan 2006 03:27:36 - 1.7 @@ -1,6 +1,6 @@ Package: molmol Version: 2k.2.0 -Revision: 31 +Revision: 32 Architecture: powerpc CustomMirror: eur-CH: ftp://ftp.mol.biol.ethz.ch/software/MOLMOL/ @@ -12,7 +12,7 @@ Source2: mirror:custom:unix-gzip/%n-%v-doc.tar.gz Source2-MD5: 517545b60b0179ab691a679ed29903a7 Depends: x11, freeglut-shlibs, openmotif3-shlibs, libtiff-shlibs, libjpeg-shlibs, libpng3-shlibs -BuildDepends: freeglut, openmotif3-shlibs, openmotif3, libtiff, libjpeg, libpng3, x11-dev, gcc3.3 +BuildDepends: freeglut, openmotif3-shlibs, openmotif3, libtiff, libjpeg, libpng3, x11-dev PatchScript: chmod -R +w * sed 's|@PREFIX@|%p|g' %a/%n.patch | patch -p1 --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/stable/main/finkinfo/sci molmol.info,1.4,1.5
Update of /cvsroot/fink/dists/10.4-transitional/stable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv1284 Modified Files: molmol.info Log Message: glut instead of freeglut Index: molmol.info === RCS file: /cvsroot/fink/dists/10.4-transitional/stable/main/finkinfo/sci/molmol.info,v retrieving revision 1.4 retrieving revision 1.5 diff -u -d -r1.4 -r1.5 --- molmol.info 28 Jan 2006 03:27:01 - 1.4 +++ molmol.info 28 Jan 2006 03:29:17 - 1.5 @@ -11,8 +11,8 @@ SourceDirectory: ../%f Source2: mirror:custom:unix-gzip/%n-%v-doc.tar.gz Source2-MD5: 517545b60b0179ab691a679ed29903a7 -Depends: x11, freeglut-shlibs, openmotif3-shlibs, libtiff-shlibs, libjpeg-shlibs, libpng3-shlibs -BuildDepends: freeglut, openmotif3-shlibs, openmotif3, libtiff, libjpeg, libpng3, x11-dev +Depends: x11, glut-shlibs, openmotif3-shlibs, libtiff-shlibs, libjpeg-shlibs, libpng3-shlibs +BuildDepends: glut, openmotif3-shlibs, openmotif3, libtiff, libjpeg, libpng3, x11-dev PatchScript: chmod -R +w * sed 's|@PREFIX@|%p|g' %a/%n.patch | patch -p1 --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci molmol.info,1.7,1.8
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv1740 Modified Files: molmol.info Log Message: changed revision number to differentiate from package in stable Index: molmol.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/molmol.info,v retrieving revision 1.7 retrieving revision 1.8 diff -u -d -r1.7 -r1.8 --- molmol.info 28 Jan 2006 03:27:36 - 1.7 +++ molmol.info 28 Jan 2006 03:30:42 - 1.8 @@ -1,6 +1,6 @@ Package: molmol Version: 2k.2.0 -Revision: 32 +Revision: 33 Architecture: powerpc CustomMirror: eur-CH: ftp://ftp.mol.biol.ethz.ch/software/MOLMOL/ --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci mosflm-small.info,1.5,1.6
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv2086 Modified Files: mosflm-small.info Log Message: removed spurious line that caused compile failure Index: mosflm-small.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/mosflm-small.info,v retrieving revision 1.5 retrieving revision 1.6 diff -u -d -r1.5 -r1.6 --- mosflm-small.info 4 Jan 2006 07:32:06 - 1.5 +++ mosflm-small.info 31 Jan 2006 16:49:57 - 1.6 @@ -12,7 +12,6 @@ CompileScript: #!/bin/zsh -ef -mv bin/ipmosflm bin/ipmosflm-big ./to_small.csh ./build cd bin --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci sparky-py.info,1.1,1.2
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv12358 Modified Files: sparky-py.info Log Message: sparky update to eliminate DYLIB_LIBRARY_PATH from wrapper script Index: sparky-py.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/sparky-py.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- sparky-py.info 17 Dec 2005 00:13:16 - 1.1 +++ sparky-py.info 3 Feb 2006 23:42:52 - 1.2 @@ -1,7 +1,7 @@ Info2: Package: sparky-py%type_pkg[python] Version: 3.111 -Revision: 1 +Revision: 2 GCC:3.3 Maintainer: Jack Howarth [EMAIL PROTECTED] Type: python (2.2 2.3 2.4) @@ -12,7 +12,11 @@ BuildDepends: python%type_pkg[python], tcltk-dev, x11-dev Conflicts: sparky-py22, sparky-py23, sparky-py24 Replaces: sparky-py22, sparky-py23, sparky-py24 -PatchScript: sed 's|@FINKPREFIX@|%p|g' %a/sparky-py.patch | sed 's|@BUILDDIR@|%b|g' | sed 's|@FINKDESTDIR@|%d|g' | sed 's|2.X|%type_raw[python]|g' |sed 's|sparky-py2X|sparky-py%type_pkg[python]|g' | patch -p1 +PatchScript: +sed 's|@FINKPREFIX@|%p|g' %a/sparky-py.patch | sed 's|@BUILDDIR@|%b|g' | sed 's|@FINKDESTDIR@|%d|g' | sed 's|2.X|%type_raw[python]|g' |sed 's|sparky-py2X|sparky-py%type_pkg[python]|g' | patch -p1 +grep -v LIBRARY_PATH bin/sparky bin/sparky_fixed +mv bin/sparky_fixed bin/sparky + CompileScript: make --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci ccp4.info,1.8,1.9
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv26254 Modified Files: ccp4.info Log Message: fix for compile error Index: ccp4.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/ccp4.info,v retrieving revision 1.8 retrieving revision 1.9 diff -u -d -r1.8 -r1.9 --- ccp4.info 26 Jan 2006 21:11:57 - 1.8 +++ ccp4.info 12 Feb 2006 05:42:41 - 1.9 @@ -1,6 +1,6 @@ Package: ccp4 Version: 5.99.5 -Revision: 1 +Revision: 2 Source: ftp://ftp.%n.ac.uk/%n/%v/packed/%n-core.tar.gz Source2: ftp://ftp.%n.ac.uk/%n/%v/packed/phaser-cctbx.tar.gz Source-MD5: 1dc37afc2597bceaabd971ba20d86ac3 @@ -41,7 +41,9 @@ export TEMPXTAL=$PWD:h source include/%n.setup-zsh export DYLD_LIBRARY_PATH=$CLIB -export PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current +export PATH=/System/Library/Frameworks/Python.framework/Versions/Current/bin:$PATH +export PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current +export PYTHONPATH=/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3 ./configure --with-x --with-shared-libs --with-fftw=%p Darwin # fix some post-configure bugs perl -pi.bak -e 's/EXTRA_LOAD_FLAGS = -lg2c//g' **/*akefile @@ -50,7 +52,9 @@ perl -pi.bak -e 's|\-lcc_dynamic||g' **/*akefile perl -pi.bak -e 's|\-lgfortran||g' x-windows/XCCPJIFFY/*akefile* # +export PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current make -i +export PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current make -i install # echo recompile xplot84driver and xccpjiffy2idraw @@ -90,7 +94,7 @@ perl -pi.bak -e 's|5.0.1|%v|g' XCCPJiffy mv -f XCCPJiffy lib/X11/app-defaults/XCCPJiffy # - perl -pi.bak -e 's|/src/ccp4lib-5.99.5-1/ccp4-5.99.5||g' bin/clipper-config + perl -pi.bak -e 's|/src/ccp4lib-5.99.5-2/ccp4-5.99.5||g' bin/clipper-config rm -f bin/clipper-config.bak perl -pi.bak -e 's|lclipper |lclipper-core |g' bin/clipper-config rm -f bin/clipper-config.bak @@ -193,42 +197,42 @@ lib/ccp4-5.99.5/libxdl_viewextra.dylib Shlibs: - %p/lib/ccp4-5.99.5/libccif.dylib 0.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libccp4c.dylib 0.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-ccp4.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-ccp4.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-ccp4.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-cif.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-cif.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-cif.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-contrib.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-contrib.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-contrib.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-core.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-core.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-core.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-minimol.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-minimol.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-minimol.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-mmdb.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-mmdb.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-mmdb.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-phs.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-phs.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-phs.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libjwc_c.0.dylib 2.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libjwc_c.0.1.1.dylib 2.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libjwc_c.dylib 2.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libxdl_view.2.dylib 3.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libxdl_view.2.0.0.dylib 2.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libxdl_view.dylib 2.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libxdl_viewextra.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libxdl_viewextra.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libxdl_viewextra.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libmmdb.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libssm.0.0.0.dylib 1.0.0
dists/10.4-transitional/unstable/main/finkinfo/sci ccp4-onlylibs-dev.info,1.5,1.6
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv26848 Modified Files: ccp4-onlylibs-dev.info Log Message: fix checksum mismatch Index: ccp4-onlylibs-dev.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/ccp4-onlylibs-dev.info,v retrieving revision 1.5 retrieving revision 1.6 diff -u -d -r1.5 -r1.6 --- ccp4-onlylibs-dev.info 25 Jan 2006 01:06:53 - 1.5 +++ ccp4-onlylibs-dev.info 12 Feb 2006 05:45:04 - 1.6 @@ -2,8 +2,10 @@ # Use version numbering to sync with the current CCP4 release: Version: 5.99.5 Revision: 1 -Source: ftp://ftp.ccp4.ac.uk/prerelease/%n.tar.gz -Source-MD5: cf085751833aecc7ccef9e67de7e9fcc +#Source: ftp://ftp.ccp4.ac.uk/prerelease/%n.tar.gz +#Source-MD5: cf085751833aecc7ccef9e67de7e9fcc +Source: http://chemistry.ucsc.edu/~wgscott/xtal/%n/%n-%v.tar.gz +Source-MD5: d9dd2e786953c812acec42b41a1c08a5 SourceRename: %n-%v.tar.gz SourceDirectory: %n Source2: http://chemistry.ucsc.edu/~wgscott/xtal/%n/%n-extras-0.1.tgz --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/unstable/main/finkinfo/sci coot.info,1.12,1.13
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv23088 Modified Files: coot.info Log Message: coot version upgrade Index: coot.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/coot.info,v retrieving revision 1.12 retrieving revision 1.13 diff -u -d -r1.12 -r1.13 --- coot.info 17 Jan 2006 23:32:36 - 1.12 +++ coot.info 19 Feb 2006 05:13:02 - 1.13 @@ -1,19 +1,19 @@ Package:coot -Version: 0.1.0-pre-1 -Revision: 1 +Version: 0.1.0-pre-3 +Revision: 4 GCC: 3.3 #Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz -Source-MD5: 94fe4c4af6ae1acfa59f36393fa34aa9 +Source-MD5: 6cb82b1069c1975ae05c7215e848af27 SourceDirectory: %n-%v Source2: http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz -Source2-MD5: c7aa4ee8861d7e82df985fe2eb39c289 +Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6 Source3: http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz -Source3-MD5: c09bb6b5524901cb0fde14589546224e +Source3-MD5: c09bb6b5524901cb0fde14589546224e ### -BuildDepends: ccp4-onlylibs-dev, glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev +BuildDepends: ccp4-onlylibs-dev, glib, gtk+2, freeglut, gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (= 0.1.1-20), libart2 (= 2.3.16-2), libart2-shlibs (= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24 # -Depends: guile16-shlibs, gtk-canvas (= 0.1.1-20), gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (= 2.3.16-2), coot-shlibs (= %v-%r) +Depends: guile16-shlibs, gtk-canvas (= 0.1.1-20), gsl-shlibs, libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (= 1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (= 2.3.16-2), coot-shlibs (= %v-%r), python24 # BuildDependsOnly: false NoSetLDFLAGS: true @@ -25,7 +25,8 @@ widgets (with the gui builder glade), mmdb, clipper, and OpenGL, together with a new approach to map contouring and importing/creation and other (modelling) operations. The mmdb, clipper, ssm and mccp4 libraries are now -provided in the ccp4-onlylibs-dev fink package. +provided in the ccp4-onlylibs-dev fink package. On-line documentation is +available from the coot Web site (see below) and is updated regularly. ### PatchScript: @@ -34,18 +35,21 @@ perl -pi.bak -e 's/include malloc.h//g' **/*.c ### -ConfigureParams: --with-mmdb-prefix=$CCP4 --with-clipper-prefix=$CCP4 --with-fftw=$CCP4 --with-glut-prefix=%p --with-gl-prefix=/usr/X11R6 --with-gtkcanvas-prefix=%p --with-ssmlib-prefix=$CCP4 --with-imlib-prefix=%p --with-gtkgl-prefix=%p --with-glib-prefix=%p --with-gsl-prefix=%p --with-guile +ConfigureParams: --with-mmdb-prefix=$CCP4 --with-clipper-prefix=$CCP4 --with-fftw=$CCP4 --with-glut-prefix=%p --with-gl-prefix=/usr/X11R6 --with-gtkcanvas-prefix=%p --with-ssmlib-prefix=$CCP4 --with-imlib-prefix=%p --with-gtkgl-prefix=%p --with-glib-prefix=%p --with-gsl-prefix=%p --with-guile --with-python ### CompileScript: #!/bin/zsh -ef source %p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup-zsh -export PATH=%p/share/guile/1.6/scripts/binoverride:$PATH +export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH +export SED=/usr/bin/sed +export PYTHONPATH= FLIBS=-L%p/lib \ CPPFLAGS=-I$CCP4/lib/clipper/clipper/mmdbold \ LDFLAGS=-L$CLIB -L/usr/lib -lSystemStubs -flat_namespace -L%p/lib \ FC=%p/bin/g77 \ CXX=/usr/bin/g++-3.3 \ CC=/usr/bin/gcc \ +py_path=%p/bin/python \ ./configure %c # make @@ -54,31 +58,45 @@ InstallScript: #!/bin/zsh -ef source %p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup-zsh +export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH +export PYTHONPATH= +export SED=/usr/bin/sed +cp src/coot.py python/coot.py make install prefix=%i # +# Clean up the 120 MB mess, which zsh makes so much fun: +/bin/rm -f **/*.o # enable coot to use its own refmac library: # perl -pi.bak -e 's|\# COOT_REFMAC_LIB|COOT_REFMAC_LIB|g' setup/coot.sh perl -pi.bak -e 's|\# export COOT_REFMAC_LIB_DIR|export
dists/10.4-transitional/unstable/main/finkinfo/sci pymol-py.info,1.6,1.7 pymol-py.patch,1.1,1.2
Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv23436 Modified Files: pymol-py.info pymol-py.patch Log Message: pymol version upgrade Index: pymol-py.info === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/pymol-py.info,v retrieving revision 1.6 retrieving revision 1.7 diff -u -d -r1.6 -r1.7 --- pymol-py.info 22 Dec 2005 15:51:29 - 1.6 +++ pymol-py.info 19 Feb 2006 05:13:47 - 1.7 @@ -1,16 +1,14 @@ Info2: Package: pymol-py%type_pkg[python] -Version: 0.98 -Revision: 5 +Version: 0.99 +Revision: 1 Maintainer: Jack Howarth [EMAIL PROTECTED] Type: python (2.2 2.3 2.4) -Source: mirror:custom:pymol/pymol-0_98-src.tgz +Source: mirror:custom:pymol/pymol-0_99rc1-src.tgz CustomMirror: Primary: http://easynews.dl.sourceforge.net/sourceforge -Source-MD5: 096cc1d06fa36eb1c8ad30560d06b81e -Source2: http://www-personal.umich.edu/~mlerner/PyMOL/apbs_tools.py -Source2-MD5: f9f97d1b5237609664febfff85cc395f +Source-MD5: 1dfb4b943e6a8dba06f4446b8a185bae SourceDirectory: pymol-%v Depends: python%type_pkg[python], libpng3-shlibs, numeric-py%type_pkg[python], tcltk, pmw-py%type_pkg[python] (= 1.2-1), freeglut-shlibs, blt-shlibs BuildDepends: libpng3, freeglut, db43-ssl|db43, readline (= 4.3-5), gdbm3, expat, tcltk-dev, blt @@ -19,7 +17,6 @@ PatchScript: sed 's|@FINKPREFIX@|%p|g' %a/pymol-py.patch | sed 's|python2.X|python%type_raw[python]|g' | sed 's|pymol-py2X|pymol-py%type_pkg[python]|g' | patch -p1 CompileScript: (cd setup; cp Rules.osx-fink %b/Rules.make) -cp ../apbs_tools.py modules/pmg_tk/startup/. make InstallScript: Index: pymol-py.patch === RCS file: /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/pymol-py.patch,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- pymol-py.patch 24 May 2005 02:34:19 - 1.1 +++ pymol-py.patch 19 Feb 2006 05:13:47 - 1.2 @@ -73,22 +73,24 @@ #--- What are we trying to build? DEST = -o modules/pymol/_cmd.so #--- Gcc Options for Linux -diff -uNr pymol-0.95.org/setup/pymol.com.osx-fink pymol-0.95/setup/pymol.com.osx-fink pymol-0.95.org/setup/pymol.com.osx-finkSat Apr 26 20:26:19 2003 -+++ pymol-0.95/setup/pymol.com.osx-finkMon Apr 5 18:12:11 2004 +diff -uNr pymol-0.99.org/setup/pymol.com.osx-fink pymol-0.99/setup/pymol.com.osx-fink +--- pymol-0.99.org/setup/pymol.com.osx-fink2005-11-19 12:46:39.0 -0500 pymol-0.99/setup/pymol.com.osx-fink 2006-02-13 09:26:52.0 -0500 @@ -5,7 +5,7 @@ # == # Set PYMOL_PATH to point at the correct location on your system # --setenv PYMOL_PATH /Users/delwarl/pymol -+setenv PYMOL_PATH @FINKPREFIX@/lib/pymol-py2X +-PYMOL_PATH=/Users/delwarl/pymol [EMAIL PROTECTED]@/lib/pymol-py24 + export PYMOL_PATH # # == - # (no changes usually required below here) -@@ -19,5 +19,5 @@ - endif - # +@@ -20,6 +20,6 @@ + fi + export PYTHONPATH # --/sw/bin/python $PYMOL_PATH/modules/pymol/__init__.py $* [EMAIL PROTECTED]@/bin/python2.X $PYMOL_PATH/modules/pymol/__init__.py $* +-/sw/bin/python $PYMOL_PATH/modules/pymol/__init__.py $@ [EMAIL PROTECTED]@/bin/python2.4 $PYMOL_PATH/modules/pymol/__init__.py $@ + + --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4-transitional/stable/main/finkinfo/sci eden.info,1.2,1.3
Update of /cvsroot/fink/dists/10.4-transitional/stable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv25548 Modified Files: eden.info Log Message: eden revision upgrade Index: eden.info === RCS file: /cvsroot/fink/dists/10.4-transitional/stable/main/finkinfo/sci/eden.info,v retrieving revision 1.2 retrieving revision 1.3 diff -u -d -r1.2 -r1.3 --- eden.info 14 Jun 2005 21:47:51 - 1.2 +++ eden.info 19 Feb 2006 05:19:10 - 1.3 @@ -1,12 +1,12 @@ Package: eden Version: 5.3 -Revision: 4 +Revision: 5 Source: http://www.edencrystallography.org/%n_V%v.tar.gz SourceRename: %n-%v.tar.gz Source-MD5: 17f4908db1944d788bac44e59c8a5cb5 SourceDirectory: eden -Depends: x11, fftw-shlibs | fftw-mpi-shlibs, tcltk, grace, python, gsl-shlibs -BuildDepends: tcltk-dev, x11-dev, gsl, fftw | fftw-mpi, gsl +Depends: x11, fftw-shlibs | fftw-mpi-shlibs, grace, gsl-shlibs +BuildDepends: x11-dev, gsl, fftw | fftw-mpi, gsl NoSetCPPFLAGS: true NoSetLDFLAGS: true Patch: %n.patch @@ -17,20 +17,20 @@ perl -pi.bak -e 's|mozilla|open|g' python/eden.py CompileScript: - cd source; make +PATH=/usr/bin:$PATH ; cd source; make InstallScript: -#!/bin/zsh -f - mkdir -p %i/bin -cd source; make install +#!/bin/zsh -ef +mkdir -p %i/bin +PATH=/usr/bin:$PATH ; cd source; make install make clean perl -pi.bak -e 's|DOUBLESWITCH = ON|DOUBLESWITCH = OFF|g' Makefile -make; make install; make clean +PATH=/usr/bin:$PATH ; make; make install; make clean cd .. - mkdir -p %i/share/xtal/%n - cp -R * %i/share/xtal/%n/. - mkdir -p %i/share/doc/%n - cp manual/UserManual.pdf %i/share/doc/%n/EdenUserManual.pdf +mkdir -p %i/share/xtal/%n +cp -R * %i/share/xtal/%n/. +mkdir -p %i/share/doc/%n +cp manual/UserManual.pdf %i/share/doc/%n/EdenUserManual.pdf rm -f %i/bin/eden rm -f %i/bin/ieden ln -s %p/share/xtal/%n/python/%n.py %i/bin/ieden @@ -48,7 +48,7 @@ eden or seden to invoke single-precision eden, ieden for the GUI, and deden for double-precision eden. GUI users need to define the environment variable EDITOR, eg: export EDITOR='see' -or setenv EDITOR vim . +or setenv EDITOR vim. License: GPL Homepage: http://www.edencrystallography.org --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.3/stable/main/finkinfo/sci eden.info,1.9,1.10
Update of /cvsroot/fink/dists/10.3/stable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv26035 Modified Files: eden.info Log Message: eden revision upgrade Index: eden.info === RCS file: /cvsroot/fink/dists/10.3/stable/main/finkinfo/sci/eden.info,v retrieving revision 1.9 retrieving revision 1.10 diff -u -d -r1.9 -r1.10 --- eden.info 16 Jun 2005 00:50:42 - 1.9 +++ eden.info 19 Feb 2006 05:20:38 - 1.10 @@ -1,12 +1,12 @@ Package: eden Version: 5.3 -Revision: 4 +Revision: 5 Source: http://www.edencrystallography.org/%n_V%v.tar.gz SourceRename: %n-%v.tar.gz Source-MD5: 17f4908db1944d788bac44e59c8a5cb5 SourceDirectory: eden -Depends: x11, fftw-shlibs | fftw-mpi-shlibs, tcltk, grace, python, gsl-shlibs -BuildDepends: tcltk-dev, x11-dev, gsl, fftw | fftw-mpi, gsl +Depends: x11, fftw-shlibs | fftw-mpi-shlibs, grace, gsl-shlibs +BuildDepends: x11-dev, gsl, fftw | fftw-mpi, gsl NoSetCPPFLAGS: true NoSetLDFLAGS: true Patch: %n.patch @@ -17,20 +17,20 @@ perl -pi.bak -e 's|mozilla|open|g' python/eden.py CompileScript: - cd source; make +PATH=/usr/bin:$PATH ; cd source; make InstallScript: -#!/bin/zsh -f - mkdir -p %i/bin -cd source; make install +#!/bin/zsh -ef +mkdir -p %i/bin +PATH=/usr/bin:$PATH ; cd source; make install make clean perl -pi.bak -e 's|DOUBLESWITCH = ON|DOUBLESWITCH = OFF|g' Makefile -make; make install; make clean +PATH=/usr/bin:$PATH ; make; make install; make clean cd .. - mkdir -p %i/share/xtal/%n - cp -R * %i/share/xtal/%n/. - mkdir -p %i/share/doc/%n - cp manual/UserManual.pdf %i/share/doc/%n/EdenUserManual.pdf +mkdir -p %i/share/xtal/%n +cp -R * %i/share/xtal/%n/. +mkdir -p %i/share/doc/%n +cp manual/UserManual.pdf %i/share/doc/%n/EdenUserManual.pdf rm -f %i/bin/eden rm -f %i/bin/ieden ln -s %p/share/xtal/%n/python/%n.py %i/bin/ieden @@ -48,7 +48,7 @@ eden or seden to invoke single-precision eden, ieden for the GUI, and deden for double-precision eden. GUI users need to define the environment variable EDITOR, eg: export EDITOR='see' -or setenv EDITOR vim . +or setenv EDITOR vim. License: GPL Homepage: http://www.edencrystallography.org --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.3/unstable/main/finkinfo/sci eden.info,1.18,1.19
Update of /cvsroot/fink/dists/10.3/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv26426 Modified Files: eden.info Log Message: eden revision upgrade Index: eden.info === RCS file: /cvsroot/fink/dists/10.3/unstable/main/finkinfo/sci/eden.info,v retrieving revision 1.18 retrieving revision 1.19 diff -u -d -r1.18 -r1.19 --- eden.info 4 Jan 2006 07:20:34 - 1.18 +++ eden.info 19 Feb 2006 05:21:45 - 1.19 @@ -1,12 +1,12 @@ Package: eden Version: 5.3 -Revision: 4 +Revision: 5 Source: http://www.edencrystallography.org/%n_V%v.tar.gz SourceRename: %n-%v.tar.gz Source-MD5: 17f4908db1944d788bac44e59c8a5cb5 SourceDirectory: eden -Depends: x11, fftw-shlibs | fftw-mpi-shlibs, tcltk, grace, python, gsl-shlibs -BuildDepends: tcltk-dev, x11-dev, gsl, fftw | fftw-mpi, gsl +Depends: x11, fftw-shlibs | fftw-mpi-shlibs, grace, gsl-shlibs +BuildDepends: x11-dev, gsl, fftw | fftw-mpi, gsl NoSetCPPFLAGS: true NoSetLDFLAGS: true Patch: %n.patch @@ -17,20 +17,20 @@ perl -pi.bak -e 's|mozilla|open|g' python/eden.py CompileScript: - cd source; make +PATH=/usr/bin:$PATH ; cd source; make InstallScript: #!/bin/zsh -ef - mkdir -p %i/bin -cd source; make install +mkdir -p %i/bin +PATH=/usr/bin:$PATH ; cd source; make install make clean perl -pi.bak -e 's|DOUBLESWITCH = ON|DOUBLESWITCH = OFF|g' Makefile -make; make install; make clean +PATH=/usr/bin:$PATH ; make; make install; make clean cd .. - mkdir -p %i/share/xtal/%n - cp -R * %i/share/xtal/%n/. - mkdir -p %i/share/doc/%n - cp manual/UserManual.pdf %i/share/doc/%n/EdenUserManual.pdf +mkdir -p %i/share/xtal/%n +cp -R * %i/share/xtal/%n/. +mkdir -p %i/share/doc/%n +cp manual/UserManual.pdf %i/share/doc/%n/EdenUserManual.pdf rm -f %i/bin/eden rm -f %i/bin/ieden ln -s %p/share/xtal/%n/python/%n.py %i/bin/ieden @@ -48,7 +48,7 @@ eden or seden to invoke single-precision eden, ieden for the GUI, and deden for double-precision eden. GUI users need to define the environment variable EDITOR, eg: export EDITOR='see' -or setenv EDITOR vim . +or setenv EDITOR vim. License: GPL Homepage: http://www.edencrystallography.org --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.2/unstable/main/finkinfo/sci eden.patch,NONE,1.1 eden.info,1.1,1.2
Update of /cvsroot/fink/dists/10.2/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv26786 Modified Files: eden.info Added Files: eden.patch Log Message: eden revision upgrade --- NEW FILE: eden.patch --- diff -ruN eden_orig/source/Makefile eden/source/Makefile --- eden_orig/source/Makefile 2004-11-21 23:55:13.0 -0800 +++ eden/source/Makefile2004-11-22 00:08:51.0 -0800 @@ -56,14 +56,14 @@ ### # Directory where the FFTW include and lib are ### -FFTW = /sw +FFTW = /swprefix LIB= $(FFTW)/lib INC= $(FFTW)/include ### # Directory to install the binary, version ### -BIN= $(HOME)/bin +BIN= /swinstallprefix/bin VERSION=V5.3 ### @@ -74,7 +74,11 @@ # -O3 on HP, -O2 on SGI or DEC. # ### -CFLAGS = -Wall -pipe -g3 +# added for os x fink: + +CFLAGS = -Wall -pipe -g3 -Wno-long-double + +#CFLAGS= -Wall -pipe -g3 #CFLAGS= -Wall -pipe -marchi686 -pedantic -gdwarf-2 -g3 #CFLAGS= -Wall -O3 -march=i686 ifneq ($(FFTW),/usr/local) @@ -88,7 +92,9 @@ # Use different libraries and include files for single and # double precision versions of EDEN. ### -DOUBLESWITCH = ON +# got rid of tab + +DOUBLESWITCH = ON ifeq ($(DOUBLESWITCH),ON) LDFLAGS = -L$(LIB) -ldfftw -lm @@ -126,8 +132,8 @@ $(CC) -o $@ $^ install: all - mv fbyteswap $(BIN) - mv eden $(BIN)/$(TARGET) + cp fbyteswap $(BIN) + cp eden $(BIN)/$(TARGET) chmod 751 $(BIN)/$(TARGET) chmod +x mkeden.csh ./mkeden.csh $(BIN) $(BIN)/$(TARGET) Index: eden.info === RCS file: /cvsroot/fink/dists/10.2/unstable/main/finkinfo/sci/eden.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- eden.info 5 Nov 2003 07:56:17 - 1.1 +++ eden.info 19 Feb 2006 05:22:49 - 1.2 @@ -1,38 +1,55 @@ Package: eden -Version: 4.1 -Revision: 1 -Source: http://www.edencrystallography.com/%n.tgz -Source-MD5: 7959a9b2f90c00666ef40cbdde72b490 -SourceDirectory: EDEN -Depends: x11, fftw-shlibs, tcltk, grace -BuildDepends: fftw, tcltk-dev +Version: 5.3 +Revision: 5 +Source: http://www.edencrystallography.org/%n_V%v.tar.gz +SourceRename: %n-%v.tar.gz +Source-MD5: 17f4908db1944d788bac44e59c8a5cb5 +SourceDirectory: eden +Depends: x11, fftw-shlibs | fftw-mpi-shlibs, grace, gsl-shlibs +BuildDepends: x11-dev, gsl, fftw | fftw-mpi, gsl +NoSetCPPFLAGS: true +NoSetLDFLAGS: true +Patch: %n.patch PatchScript: -#!/bin/csh -f - mv source/Makefile source/Makefile_dist - sed s/libs=/libs= -L\%p\/lib/g source/Makefile_dist source/Makefile - mv source/apodutil.c source/apodutil.c-dist - sed s/xmgr/xmgrace/g source/apodutil.c-dist source/apodutil.c +perl -pi.bak -e 's|/swprefix|%p|g' source/Makefile +perl -pi.bak -e 's|/swinstallprefix|%i|g' source/Makefile +perl -pi.bak -e 's|/swprefix|%p|g' python/eden.py +perl -pi.bak -e 's|mozilla|open|g' python/eden.py CompileScript: - cd source; make +PATH=/usr/bin:$PATH ; cd source; make InstallScript: - mkdir -p %i/share - mkdir -p %i/share/xtal - mkdir -p %i/share/xtal/%n - cp -R * %i/share/xtal/%n/. - mkdir -p %i/bin - ln -s %p/share/xtal/%n/source/%n %i/bin/%n - mkdir -p %i/share/doc - mkdir -p %i/share/doc/%n - cp manual/UserManual.ps %i/share/doc/%n/EdenUserManual.ps +#!/bin/zsh -ef +mkdir -p %i/bin +PATH=/usr/bin:$PATH ; cd source; make install +make clean +perl -pi.bak -e 's|DOUBLESWITCH = ON|DOUBLESWITCH = OFF|g' Makefile +PATH=/usr/bin:$PATH ; make; make install; make clean +cd .. +mkdir -p %i/share/xtal/%n +cp -R * %i/share/xtal/%n/. +mkdir -p %i/share/doc/%n +cp manual/UserManual.pdf %i/share/doc/%n/EdenUserManual.pdf +rm -f %i/bin/eden +rm -f %i/bin/ieden +ln -s %p/share/xtal/%n/python/%n.py %i/bin/ieden +cp %i/bin/seden %i/bin/eden RunTimeVars: EDENHOME: %p/share/xtal/%n Description: Electron density holographic refinement DescDetail: -Improve Electron Density Maps in a Maximally Unbiased Manner. -Hanna and Abraham Szoke. +Improve electron density maps in a maximally unbiased manner. +Written by Hanna and Abraham Szoke. There are now two versions +of eden, seden and deden. seden is compiled with single-precision +fftw libs, and is faster and less memory-intensive.
dists/10.4/unstable/main/finkinfo/sci coot.info,1.1,NONE ccp4-onlylibs-dev.info,1.1,NONE
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv6836 Removed Files: coot.info ccp4-onlylibs-dev.info Log Message: removing coot and dependency due to g++4 induced run-time error --- ccp4-onlylibs-dev.info DELETED --- --- coot.info DELETED --- --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
dists/10.4/unstable/main/finkinfo/sci coot.info,1.2,1.3 ccp4-onlylibs-dev.info,1.2,1.3
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv8241 Added Files: coot.info ccp4-onlylibs-dev.info Log Message: using g++3.3 until software authors correct bug in g++4 compiled code --- NEW FILE: ccp4-onlylibs-dev.info --- Package: ccp4-onlylibs-dev # Use version numbering to sync with the current CCP4 release: Version: 5.99.5 Revision: 1 #Source: ftp://ftp.ccp4.ac.uk/prerelease/%n.tar.gz #Source-MD5: cf085751833aecc7ccef9e67de7e9fcc Source: http://chemistry.ucsc.edu/~wgscott/xtal/%n/%n-%v.tar.gz Source-MD5: d9dd2e786953c812acec42b41a1c08a5 SourceRename: %n-%v.tar.gz SourceDirectory: %n Source2: http://chemistry.ucsc.edu/~wgscott/xtal/%n/%n-extras-0.1.tgz Source2-MD5: ea307964e3786bef0868ea560471 GCC: 3.3 # This is temporary until software author corrects g++4 bug Depends: BuildDepends: g77 (= 3.4.0-2), f2c, fort77 NoSetCPPFLAGS: true NoSetLDFLAGS: true ### PatchScript: #!/bin/zsh -ef umask 0022 # Use my patched configure and ccp4.setup-zsh files cp ../ccp4.setup-zsh include/. cp ../configure . # setup scripts for tcsh, zsh and bash users export TEMPXTAL=$PWD:h # perl -pi.bak -e 's|/xtal|\$TEMPXTAL|g' include/ccp4.setup* # build prefix (changed in install) perl -pi.bak -e 's|/prefix|%p|g' include/ccp4.setup* # location of tcktk, blt (not needed here, but doesn't hurt). perl -pi.bak -e 's|/usr/local/bin|%p/bin|g' include/ccp4.setup* # same # make copy for tcsh users (CCP4 convention is no suffix) cp include/ccp4.setup-dist include/ccp4.setup # # We need the mmdbold clipper libraries built for COOT: perl -pi.bak -e 's|enable_mmdbold=no|enable_mmdbold=yes|g' lib/clipper/configure* # clean up: rm -f include/*.bak lib/clipper/*.bak ### CompileScript: #!/bin/zsh -ef umask 0022 export TEMPXTAL=$PWD:h source include/ccp4.setup-zsh export DYLD_LIBRARY_PATH=$CLIB # FLIBS=-L%p/lib -lg2c LDFLAGS=-L/usr/lib -lg2c -lSystemStubs -L%p/lib FC=%p/bin/g77 CXX=/usr/bin/g++-3.3 CC=/usr/bin/gcc ./configure --onlylibs Darwin # # fix some post-configure bugs # make -i 2../make.log |tee ../make.log make -i install 2../makeinst.log |tee ../makeinst.log # echo Ignoring error messages. They are harmless # command ls -1 lib/*.a sleep 10 # # Check to make sure all the libraries we need were built: # (Sort real errors from the bogus ones we suppressed.) if (( $(command ls -1 lib/*.a | command wc -l) == 15 ));then print Build appears to have succeeded. else print * print Build has failed: print * sleep 3 cat ../make.log ../makeinst.log return 1 fi # make realclean ### InstallScript: #!/bin/zsh -ef umask 0022 export TEMPXTAL=$PWD:h source include/ccp4.setup-zsh export DYLD_LIBRARY_PATH=$CLIB ORIGDIR=$(dirname $PWD) # # Change environment scripts to match final installation install prefix: perl -pi.bak -e 's|\$TEMPXTAL|%p/share/xtal|g' include/ccp4.setup* perl -pi.bak -e 's|CCP4_MASTER/%n|CCP4_MASTER/%n-%v|g' include/ccp4.setup-zsh perl -pi.bak -e 's|ccp4-5.99.5|%n-%v|g'include/ccp4.setup* rm -f include/*.bak perl -pi.bak -e 's|src/fink.build/%n-%v-%r/%n|share/xtal/%n-%v|g' bin/clipper-config rm -f bin/clipper-config.bak perl -pi.bak -e 's|/src/fink.build/%n-%v-%r/%n/lib|/share/xtal/%n-%v/lib|g' lib/*.la rm -f lib/*.la.bak # # Now install: mkdir -p %i/share/xtal/%n-%v cp -R * %i/share/xtal/%n-%v/. ranlib %i/share/xtal/%n-%v/lib/**/*.a ### Description: CCP4 Libraries DescDetail: This package installs CCP4 libraries, only. If you need all of CCP4, install the self-contained CCP4 package instead of this. The licensing for the CCP4 library loosely conforms to the LGPL, unlike the more restrictive CCP4 license. This version compiles with the Apple Lapack/Blas framework CCP4lib files will be installed under %p/share/xtal/ccp4-onlylibs-dev-5.99.5. Programs requiring these libraries to build or run need to source the appropriate %p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup file for the shell, as is done in the coot.info file. The primary use for this package, currently, is for compiling COOT. DocFiles: conditions.txt Homepage: http://www.ccp4.ac.uk License: Restrictive Maintainer: W. G. Scott [EMAIL PROTECTED] --- NEW FILE: coot.info --- Package:coot Version: 0.1.0-pre-3 Revision: 4 GCC: 3.3 # This is temporary until software author corrects g++4 bug #Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz Source:
dists/10.4/unstable/main/finkinfo/sci ccp4.info,1.2,1.3 ccp4.patch,1.1,1.2
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv9425 Modified Files: ccp4.info ccp4.patch Log Message: ccp4 revision upgrade Index: ccp4.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4.info,v retrieving revision 1.2 retrieving revision 1.3 diff -u -d -r1.2 -r1.3 --- ccp4.info 3 Feb 2006 18:41:18 - 1.2 +++ ccp4.info 20 Feb 2006 06:02:32 - 1.3 @@ -1,7 +1,6 @@ Package: ccp4 Version: 5.99.5 -Revision: 1001 -GCC: 4.0 +Revision: 1002 Source: ftp://ftp.%n.ac.uk/%n/%v/packed/%n-core.tar.gz Source2: ftp://ftp.%n.ac.uk/%n/%v/packed/phaser-cctbx.tar.gz Source-MD5: 1dc37afc2597bceaabd971ba20d86ac3 @@ -42,7 +41,9 @@ export TEMPXTAL=$PWD:h source include/%n.setup-zsh export DYLD_LIBRARY_PATH=$CLIB -export PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current +export PATH=/System/Library/Frameworks/Python.framework/Versions/Current/bin:$PATH +export PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current +export PYTHONPATH=/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3 ./configure --with-x --with-shared-libs --with-fftw=%p Darwin # fix some post-configure bugs perl -pi.bak -e 's/EXTRA_LOAD_FLAGS = -lg2c//g' **/*akefile @@ -51,7 +52,9 @@ perl -pi.bak -e 's|\-lcc_dynamic||g' **/*akefile perl -pi.bak -e 's|\-lgfortran||g' x-windows/XCCPJIFFY/*akefile* # +export PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current make -i +export PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current make -i install # echo recompile xplot84driver and xccpjiffy2idraw @@ -91,13 +94,20 @@ perl -pi.bak -e 's|5.0.1|%v|g' XCCPJiffy mv -f XCCPJiffy lib/X11/app-defaults/XCCPJiffy # - perl -pi.bak -e 's|/src/ccp4lib-5.99.5-1/ccp4-5.99.5||g' bin/clipper-config + perl -pi.bak -e 's|/src/ccp4lib-5.99.5-2/ccp4-5.99.5||g' bin/clipper-config rm -f bin/clipper-config.bak perl -pi.bak -e 's|lclipper |lclipper-core |g' bin/clipper-config rm -f bin/clipper-config.bak perl -pi.bak -e 's|lib/lib -lrfftw -lfftw |lib/ccp4-%v -lsrfftw -lsfftw |g' bin/clipper-config rm -f bin/clipper-config.bak # +# Fix path in libfoo.la files: +# + perl -pi.bak -e 's|/src/fink.build/%n-%v-%r/%n-%v/lib|/lib/%n-%v|g' lib/*.la + rm -f lib/*.la.bak +# +# Now install: +# mkdir -p %i/lib cp -R lib %i/lib/%n-%v mkdir -p %i/bin @@ -114,8 +124,8 @@ # back to build directory cd .. # - /bin/rm -rf lib -# /bin/mv lib lib-save +/bin/rm -rf lib +#/bin/mv lib lib-save cp -R * %i/share/xtal/%n-%v/. ln -s %p/lib/%n-%v %i/share/xtal/%n-%v/lib @@ -182,7 +192,6 @@ lib/ccp4-5.99.5/libjwc_c.0.1.1.dylib lib/ccp4-5.99.5/libjwc_c.0.dylib lib/ccp4-5.99.5/libjwc_c.dylib -lib/ccp4-5.99.5/libmmdb.dylib lib/ccp4-5.99.5/libssm.0.0.0.dylib lib/ccp4-5.99.5/libssm.0.dylib lib/ccp4-5.99.5/libssm.dylib @@ -193,46 +202,47 @@ lib/ccp4-5.99.5/libxdl_viewextra.0.dylib lib/ccp4-5.99.5/libxdl_viewextra.dylib - Shlibs: - %p/lib/ccp4-5.99.5/libccif.dylib 0.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libccp4c.dylib 0.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-ccp4.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-ccp4.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-ccp4.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-cif.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-cif.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-cif.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-contrib.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-contrib.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-contrib.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-core.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-core.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-core.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-minimol.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-minimol.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-minimol.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-mmdb.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-mmdb.0.0.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-mmdb.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) - %p/lib/ccp4-5.99.5/libclipper-phs.0.dylib 1.0.0 ccp4lib-shlibs (= 5.99.5-1) -
dists/10.4/unstable/main/finkinfo/sci molmol.info,1.2,1.3
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv9787 Modified Files: molmol.info Log Message: molmol revision upgrade Index: molmol.info === RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/molmol.info,v retrieving revision 1.2 retrieving revision 1.3 diff -u -d -r1.2 -r1.3 --- molmol.info 3 Feb 2006 18:22:26 - 1.2 +++ molmol.info 20 Feb 2006 06:03:27 - 1.3 @@ -1,6 +1,6 @@ Package: molmol Version: 2k.2.0 -Revision: 33 +Revision: 1033 CustomMirror: eur-CH: ftp://ftp.mol.biol.ethz.ch/software/MOLMOL/ # nam-US: ftp://freedom7.swmed.edu/pub/software/MOLMOL/ --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnkkid=103432bid=230486dat=121642 ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits
