Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
actually, I was trying to install the gdl package and it failed at the octave-atlas step. but if I can be of any help (I am rather a newbie than an expert of fink...), I can try any suggestion Yann Segfaults are hard to diagnose (remember the last one about octave-forge, Ben ..) And BTW, I see the failed test (/sw/share/octave/3.0.0/m/sparse/ pcg.m) is in the sparse directory, and contains several refs to sparsity; suitesparse might not be involved ?? JF It is possible. If Yann is up to the task of helping isolate the problem, we can have him run test pcg verbose That should tell us what test is actually failing. I suspect the left-divide because that problem has already been identified. However, I'm confused as to why Yann is encountering it ... unless he is using Octave's developer sources form Feb to the mid-Mar. Ben - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
I have tried your fink rebuild atlas atlas-shlibs (with no error) and then tried again to install octave-atlas, but got the same error as before... But after suppressing make check in the /sw/fink/10.4/unstable/main/ finkinfo/sci/octave.info file, the installation of octave-atlas worked fine. Thank you ! Yann I believe this problem has been fixed in Octave's current developer sources, which I'm currently running. The problem is related to a change in how gfortran returns values of complex functions. If you edit octave.info and remove the line make check, it should build and install. If my inference is correct, the following should reproduce the crash N = 97; mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1)); For N 97 it should work (if you build without make check, please confirm). I'm surprised this error is resulting with the atlas version. When did you build altas? Perhaps you might try fink rebuild atlas atlas-shlibs before building octave-atlas. That way you can be sure that blas/lapack/octave are each compiled in a consistent manner. Ben - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
[Fink-users] Failed: phase compiling: djvulibre-3.5.20-1001 failed
I fail installing djvulibre with Leopard 10.5.2 preinstalled on a new MacBook Pro: i686-apple-darwin9-g++-4.0.1: /usr/X11/lib/libXrandr.2.0.0.dylib: No such file or directory make[2]: *** [djview] Error 1 make[1]: *** [all] Error 2 make: *** [all] Error 2 ### execution of make failed, exit code 2 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-djvulibre-3.5.20-1001 (Reading database ... 56922 files and directories currently installed.) Removing fink-buildlock-djvulibre-3.5.20-1001 ... Failed: phase compiling: djvulibre-3.5.20-1001 failed I have seen the previous thread on the same subject but it doesn't help (I have re-run fink selfupdate before this email). Note that I have a /usr/X11/lib/libXrandr.2.1.0.dylib file. Thank you for your help Yann- Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: djvulibre-3.5.20-1001 failed
thank you. actually I have created a link between the 2 files (libXrandr.2.0.0.dylib and /usr/X11/lib/libXrandr.2.1.0.dylib) and it solved the problem. Yann Yann Clénet wrote: I fail installing djvulibre with Leopard 10.5.2 preinstalled on a new MacBook Pro: i686-apple-darwin9-g++-4.0.1: /usr/X11/lib/libXrandr.2.0.0.dylib: No such file or directory make[2]: *** [djview] Error 1 make[1]: *** [all] Error 2 make: *** [all] Error 2 ### execution of make failed, exit code 2 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-djvulibre-3.5.20-1001 (Reading database ... 56922 files and directories currently installed.) Removing fink-buildlock-djvulibre-3.5.20-1001 ... Failed: phase compiling: djvulibre-3.5.20-1001 failed I have seen the previous thread on the same subject but it doesn't help (I have re-run fink selfupdate before this email). Note that I have a /usr/X11/lib/libXrandr.2.1.0.dylib file. I don't remember what exactly has been said before on this subject, but there is a real bug in (some versions of) Leopard's X11 which is not Fink's fault and cannot easily be corrected by Fink: The bug is that this version of X11 (for example the one that comes with OSX 10.5.2) has a file /usr/X11/lib/libXrandr.la which references libXrandr.2.0.0.dylib, but libXrandr.2.0.0.dylib does not exist. The fix is - either to edit /usr/X11/lib/libXrandr.la and replace libXrandr. 2.0.0.dylib by libXrandr.2.1.0.dylib: sudo perl -pi.bak -e 's|2.0.0|2.1.0|' /usr/X11/lib/libXrandr.la - or to create libXrandr.2.0.0.dylib as a symlink: sudo ln -s libXrandr.2.dylib /usr/X11/lib/libXrandr.2.0.0.dylib Either one of these commands should solve the problem, but neither of them can or should be done by Fink, you have to do it by hand. It seems that in the new version 2.2.0 of X11 that will be available from the xquartz wiki site, the first one of these possibilities will be realized. -- Martin - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
[Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
I have now a problem installing with fink the package octave-atlas on my new MacBook Pro with preinstalled Leopard 10.5.2 (cf below). Anyone has any idea ??? Thank you in advance Yann -- Octave successfully built. Now choose from the following: ./run-octave- to run in place to test before installing make check - to run the tests make install- to install make check make -f octMakefile check make -C test check ./build_sparse_tests.sh ../run-octave --norc --silent --no-history ./fntests.m . Integrated test scripts: src/DLD-FUNCTIONS/bsxfun.cc PASS 55/55 src/DLD-FUNCTIONS/cellfun.cc ... PASS 31/31 src/DLD-FUNCTIONS/conv2.cc . PASS1/1 src/DLD-FUNCTIONS/dispatch.cc .. PASS 13/13 src/DLD-FUNCTIONS/fft.cc ... PASS9/9 src/DLD-FUNCTIONS/fsolve.cc PASS4/4 src/DLD-FUNCTIONS/luinc.cc . PASS2/2 src/DLD-FUNCTIONS/matrix_type.cc ... PASS 51/51 src/DLD-FUNCTIONS/rand.cc .. PASS 57/57 src/DLD-FUNCTIONS/regexp.cc PASS 81/81 src/DLD-FUNCTIONS/spkron.cc PASS2/2 src/DLD-FUNCTIONS/spqr.cc .. PASS 14/14 src/DLD-FUNCTIONS/tsearch.cc ... PASS6/6 src/data.cc PASS 20/20 src/ov-fcn-handle.cc ... PASS3/3 src/ov-struct.cc ... PASS 15/15 src/pt-idx.cc .. PASS5/5 src/strfns.cc .. PASS 22/22 src/syscalls.cc PASS1/1 liboctave/CMatrix.cc ... PASS6/6 liboctave/dMatrix.cc ... PASS6/6 scripts/audio/wavwrite.m ... PASS3/3 scripts/elfun/acosd.m .. PASS3/3 scripts/elfun/acotd.m .. PASS3/3 scripts/elfun/acscd.m .. PASS3/3 scripts/elfun/asecd.m .. PASS3/3 scripts/elfun/asind.m .. PASS3/3 scripts/elfun/atand.m .. PASS3/3 scripts/elfun/cosd.m ... PASS5/5 scripts/elfun/cotd.m ... PASS5/5 scripts/elfun/cscd.m ... PASS5/5 scripts/elfun/secd.m ... PASS5/5 scripts/elfun/sind.m ... PASS5/5 scripts/elfun/tand.m ... PASS5/5 scripts/general/__isequal__.m .. PASS 26/26 scripts/general/accumarray.m ... PASS 11/11 scripts/general/arrayfun.m . PASS1/1 scripts/general/bitcmp.m ... PASS 15/15 scripts/general/blkdiag.m .. PASS8/8 scripts/general/cell2mat.m . PASS2/2 scripts/general/cplxpair.m . PASS 13/13 scripts/general/cumtrapz.m . PASS6/6 scripts/general/deal.m . PASS2/2 scripts/general/interp1.m .. PASS 144/144 scripts/general/interp2.m .. PASS6/6 scripts/general/interp3.m .. PASS1/1 scripts/general/interpft.m . PASS5/5 scripts/general/issymmetric.m .. PASS 12/12 scripts/general/lookup.m ... PASS 13/13 scripts/general/mod.m .. PASS 18/18 scripts/general/nthroot.m .. PASS3/3 scripts/general/polyarea.m . PASS4/4 scripts/general/repmat.m ... PASS 16/16 scripts/general/structfun.m PASS1/1 scripts/general/sub2ind.m .. PASS 24/24 scripts/general/trapz.m PASS6/6 scripts/geometry/convhull.m PASS1/1 scripts/geometry/delaunay.m PASS1/1 scripts/geometry/delaunay3.m ... PASS1/1 scripts/geometry/dsearch.m . PASS2/2 scripts/geometry/dsearchn.m PASS
