date:20170825

Re: PyTrilinos import error Mac OS

2017-08-25 Thread Guyer, Jonathan E. Dr. (Fed)

I'm glad I could help. Hopefully the conda devs will show me how to get a 
complete solution to what's still pretty broken.


> On Aug 25, 2017, at 1:12 PM, Seufzer, William J. (LARC-D307) 
>  wrote:
> 
> Success!
> 
> Here are the results from running parallel.py in the FiPy examples folder.
> 
> (pytril) examples: mpirun -np 4 python parallel.py 
> mpi4py: processor 0 of 4 :: PyTrilinos: processor 0 of 4 :: FiPy: 4 cells on 
> processor 0 of 4
> mpi4py: processor 1 of 4 :: PyTrilinos: processor 1 of 4 :: FiPy: 6 cells on 
> processor 1 of 4
> mpi4py: processor 3 of 4 :: PyTrilinos: processor 3 of 4 :: FiPy: 6 cells on 
> processor 3 of 4
> mpi4py: processor 2 of 4 :: PyTrilinos: processor 2 of 4 :: FiPy: 6 cells on 
> processor 2 of 4
> 
> Thanks!
> 
> Bill Seufzer, PhD
> NASA Langley Research Center
> 
>> On Aug 25, 2017, at 12:54 PM, Guyer, Jonathan E. Dr. (Fed) 
>>  wrote:
>> 
>> OK, multiple things are messed up here and I'm not sure any of them are 
>> related to Apple possibly moving things. 
>> 
>> Things should work on Mac OS X and Linux with:
>> 
>> conda create --name  --channel guyer --channel conda-forge fipy 
>> nomkl
>> 
>> 
>> 
>> Note, this does not work on Windows. On that platform, you should be able to 
>> do:
>> 
>> conda create --name  --channel guyer --channel conda-forge python 
>> numpy scipy matplotlib mayavi
>> source activate 
>> pip install fipy
>> 
>> There are presently no conda packages of any solver suite but scipy 
>> available for Windows.
>> 
>> 
>>> On Aug 22, 2017, at 12:03 PM, Guyer, Jonathan E. Dr. (Fed) 
>>>  wrote:
>>> 
>>> Apple moved something between 10.11 and 10.12. It looks like my rebuild for 
>>> 10.12 from a few weeks ago broke 10.11. I'll have to figure out how to post 
>>> both versions (and rebuild the 10.11 version at all).
>>> 
>>> 
 On Aug 22, 2017, at 9:58 AM, Seufzer, William J. (LARC-D307) 
  wrote:
 
 I get the following error on Mac OS 10.11.6 (Xcode 8.2.1 w/ command line 
 tools installed). I used:
 
 conda create --name pytril --channel guyer --channel condo-forge fipy
 
 to create the environment (BTW, thanks for setting that up!!)
 
 Father Google doesn’t seem to be of any help on this one.
 
 The error:
 
 (pytril) ~: python
 Python 2.7.13 | packaged by conda-forge | (default, May  2 2017, 13:29:36) 
 [GCC 4.2.1 Compatible Apple LLVM 6.1.0 (clang-602.0.53)] on darwin
 Type "help", "copyright", "credits" or "license" for more information.
>>> from mpi4py import MPI
>>> from PyTrilinos import Epetra
 Traceback (most recent call last):
 File "", line 1, in 
 File 
 "/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/Epetra.py",
  line 78, in 
 _Epetra = swig_import_helper()
 File 
 "/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/Epetra.py",
  line 74, in swig_import_helper
 _mod = imp.load_module('_Epetra', fp, pathname, description)
 ImportError: 
 dlopen(/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/_Epetra.so,
  258): Symbol not found: _cgesv_
 Referenced from: 
 /Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/../../..//libteuchosnumerics.11.dylib
 Expected in: 
 /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
 in 
 /Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/../../..//libteuchosnumerics.11.dylib
>>> 
 
 I’m on a centrally managed Mac, so OS update is not an option. Xcode, gcc, 
 and Conda install are under my control.
 
 Thanks,
 
 Bill
 
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 fipy@nist.gov
 http://www.ctcms.nist.gov/fipy
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>>> 
>>> 
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>> 
>> 
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> 
> 
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Re: PyTrilinos import error Mac OS

2017-08-25 Thread Seufzer, William J. (LARC-D307)

Success!

Here are the results from running parallel.py in the FiPy examples folder.

(pytril) examples: mpirun -np 4 python parallel.py 
mpi4py: processor 0 of 4 :: PyTrilinos: processor 0 of 4 :: FiPy: 4 cells on 
processor 0 of 4
mpi4py: processor 1 of 4 :: PyTrilinos: processor 1 of 4 :: FiPy: 6 cells on 
processor 1 of 4
mpi4py: processor 3 of 4 :: PyTrilinos: processor 3 of 4 :: FiPy: 6 cells on 
processor 3 of 4
mpi4py: processor 2 of 4 :: PyTrilinos: processor 2 of 4 :: FiPy: 6 cells on 
processor 2 of 4

Thanks!

Bill Seufzer, PhD
NASA Langley Research Center

> On Aug 25, 2017, at 12:54 PM, Guyer, Jonathan E. Dr. (Fed) 
>  wrote:
> 
> OK, multiple things are messed up here and I'm not sure any of them are 
> related to Apple possibly moving things. 
> 
> Things should work on Mac OS X and Linux with:
> 
>  conda create --name  --channel guyer --channel conda-forge fipy 
> nomkl
> 
> 
> 
> Note, this does not work on Windows. On that platform, you should be able to 
> do:
> 
>  conda create --name  --channel guyer --channel conda-forge python 
> numpy scipy matplotlib mayavi
>  source activate 
>  pip install fipy
> 
> There are presently no conda packages of any solver suite but scipy available 
> for Windows.
> 
> 
>> On Aug 22, 2017, at 12:03 PM, Guyer, Jonathan E. Dr. (Fed) 
>>  wrote:
>> 
>> Apple moved something between 10.11 and 10.12. It looks like my rebuild for 
>> 10.12 from a few weeks ago broke 10.11. I'll have to figure out how to post 
>> both versions (and rebuild the 10.11 version at all).
>> 
>> 
>>> On Aug 22, 2017, at 9:58 AM, Seufzer, William J. (LARC-D307) 
>>>  wrote:
>>> 
>>> I get the following error on Mac OS 10.11.6 (Xcode 8.2.1 w/ command line 
>>> tools installed). I used:
>>> 
>>> conda create --name pytril --channel guyer --channel condo-forge fipy
>>> 
>>> to create the environment (BTW, thanks for setting that up!!)
>>> 
>>> Father Google doesn’t seem to be of any help on this one.
>>> 
>>> The error:
>>> 
>>> (pytril) ~: python
>>> Python 2.7.13 | packaged by conda-forge | (default, May  2 2017, 13:29:36) 
>>> [GCC 4.2.1 Compatible Apple LLVM 6.1.0 (clang-602.0.53)] on darwin
>>> Type "help", "copyright", "credits" or "license" for more information.
>> from mpi4py import MPI
>> from PyTrilinos import Epetra
>>> Traceback (most recent call last):
>>> File "", line 1, in 
>>> File 
>>> "/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/Epetra.py",
>>>  line 78, in 
>>>  _Epetra = swig_import_helper()
>>> File 
>>> "/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/Epetra.py",
>>>  line 74, in swig_import_helper
>>>  _mod = imp.load_module('_Epetra', fp, pathname, description)
>>> ImportError: 
>>> dlopen(/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/_Epetra.so,
>>>  258): Symbol not found: _cgesv_
>>> Referenced from: 
>>> /Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/../../..//libteuchosnumerics.11.dylib
>>> Expected in: 
>>> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
>>> in 
>>> /Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/../../..//libteuchosnumerics.11.dylib
>> 
>>> 
>>> I’m on a centrally managed Mac, so OS update is not an option. Xcode, gcc, 
>>> and Conda install are under my control.
>>> 
>>> Thanks,
>>> 
>>> Bill
>>> 
>>> ___
>>> fipy mailing list
>>> fipy@nist.gov
>>> http://www.ctcms.nist.gov/fipy
>>> [ NIST internal ONLY: https://email.nist.gov/mailman/listinfo/fipy ]
>> 
>> 
>> ___
>> fipy mailing list
>> fipy@nist.gov
>> http://www.ctcms.nist.gov/fipy
>> [ NIST internal ONLY: https://email.nist.gov/mailman/listinfo/fipy ]
> 
> 
> ___
> fipy mailing list
> fipy@nist.gov
> http://www.ctcms.nist.gov/fipy
>  [ NIST internal ONLY: https://email.nist.gov/mailman/listinfo/fipy ]


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Re: PyTrilinos import error Mac OS

2017-08-25 Thread Guyer, Jonathan E. Dr. (Fed)

Make that `activate ` on Windows

> On Aug 25, 2017, at 12:54 PM, Guyer, Jonathan E. Dr. (Fed) 
>  wrote:
> 
> OK, multiple things are messed up here and I'm not sure any of them are 
> related to Apple possibly moving things. 
> 
> Things should work on Mac OS X and Linux with:
> 
>  conda create --name  --channel guyer --channel conda-forge fipy 
> nomkl
> 
> 
> 
> Note, this does not work on Windows. On that platform, you should be able to 
> do:
> 
>  conda create --name  --channel guyer --channel conda-forge python 
> numpy scipy matplotlib mayavi
>  source activate 
>  pip install fipy
> 
> There are presently no conda packages of any solver suite but scipy available 
> for Windows.
> 
> 
>> On Aug 22, 2017, at 12:03 PM, Guyer, Jonathan E. Dr. (Fed) 
>>  wrote:
>> 
>> Apple moved something between 10.11 and 10.12. It looks like my rebuild for 
>> 10.12 from a few weeks ago broke 10.11. I'll have to figure out how to post 
>> both versions (and rebuild the 10.11 version at all).
>> 
>> 
>>> On Aug 22, 2017, at 9:58 AM, Seufzer, William J. (LARC-D307) 
>>>  wrote:
>>> 
>>> I get the following error on Mac OS 10.11.6 (Xcode 8.2.1 w/ command line 
>>> tools installed). I used:
>>> 
>>> conda create --name pytril --channel guyer --channel condo-forge fipy
>>> 
>>> to create the environment (BTW, thanks for setting that up!!)
>>> 
>>> Father Google doesn’t seem to be of any help on this one.
>>> 
>>> The error:
>>> 
>>> (pytril) ~: python
>>> Python 2.7.13 | packaged by conda-forge | (default, May  2 2017, 13:29:36) 
>>> [GCC 4.2.1 Compatible Apple LLVM 6.1.0 (clang-602.0.53)] on darwin
>>> Type "help", "copyright", "credits" or "license" for more information.
>> from mpi4py import MPI
>> from PyTrilinos import Epetra
>>> Traceback (most recent call last):
>>> File "", line 1, in 
>>> File 
>>> "/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/Epetra.py",
>>>  line 78, in 
>>>  _Epetra = swig_import_helper()
>>> File 
>>> "/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/Epetra.py",
>>>  line 74, in swig_import_helper
>>>  _mod = imp.load_module('_Epetra', fp, pathname, description)
>>> ImportError: 
>>> dlopen(/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/_Epetra.so,
>>>  258): Symbol not found: _cgesv_
>>> Referenced from: 
>>> /Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/../../..//libteuchosnumerics.11.dylib
>>> Expected in: 
>>> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
>>> in 
>>> /Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/../../..//libteuchosnumerics.11.dylib
>> 
>>> 
>>> I’m on a centrally managed Mac, so OS update is not an option. Xcode, gcc, 
>>> and Conda install are under my control.
>>> 
>>> Thanks,
>>> 
>>> Bill
>>> 
>>> ___
>>> fipy mailing list
>>> fipy@nist.gov
>>> http://www.ctcms.nist.gov/fipy
>>> [ NIST internal ONLY: https://email.nist.gov/mailman/listinfo/fipy ]
>> 
>> 
>> ___
>> fipy mailing list
>> fipy@nist.gov
>> http://www.ctcms.nist.gov/fipy
>> [ NIST internal ONLY: https://email.nist.gov/mailman/listinfo/fipy ]
> 


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Re: PyTrilinos import error Mac OS

2017-08-25 Thread Guyer, Jonathan E. Dr. (Fed)

OK, multiple things are messed up here and I'm not sure any of them are related 
to Apple possibly moving things. 

Things should work on Mac OS X and Linux with:

  conda create --name  --channel guyer --channel conda-forge fipy 
nomkl



Note, this does not work on Windows. On that platform, you should be able to do:

  conda create --name  --channel guyer --channel conda-forge python 
numpy scipy matplotlib mayavi
  source activate 
  pip install fipy

There are presently no conda packages of any solver suite but scipy available 
for Windows.


> On Aug 22, 2017, at 12:03 PM, Guyer, Jonathan E. Dr. (Fed) 
>  wrote:
> 
> Apple moved something between 10.11 and 10.12. It looks like my rebuild for 
> 10.12 from a few weeks ago broke 10.11. I'll have to figure out how to post 
> both versions (and rebuild the 10.11 version at all).
> 
> 
>> On Aug 22, 2017, at 9:58 AM, Seufzer, William J. (LARC-D307) 
>>  wrote:
>> 
>> I get the following error on Mac OS 10.11.6 (Xcode 8.2.1 w/ command line 
>> tools installed). I used:
>> 
>> conda create --name pytril --channel guyer --channel condo-forge fipy
>> 
>> to create the environment (BTW, thanks for setting that up!!)
>> 
>> Father Google doesn’t seem to be of any help on this one.
>> 
>> The error:
>> 
>> (pytril) ~: python
>> Python 2.7.13 | packaged by conda-forge | (default, May  2 2017, 13:29:36) 
>> [GCC 4.2.1 Compatible Apple LLVM 6.1.0 (clang-602.0.53)] on darwin
>> Type "help", "copyright", "credits" or "license" for more information.
> from mpi4py import MPI
> from PyTrilinos import Epetra
>> Traceback (most recent call last):
>> File "", line 1, in 
>> File 
>> "/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/Epetra.py",
>>  line 78, in 
>>   _Epetra = swig_import_helper()
>> File 
>> "/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/Epetra.py",
>>  line 74, in swig_import_helper
>>   _mod = imp.load_module('_Epetra', fp, pathname, description)
>> ImportError: 
>> dlopen(/Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/_Epetra.so,
>>  258): Symbol not found: _cgesv_
>> Referenced from: 
>> /Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/../../..//libteuchosnumerics.11.dylib
>> Expected in: 
>> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
>> in 
>> /Users/wseufzer/anaconda3/envs/pytril/lib/python2.7/site-packages/PyTrilinos/../../..//libteuchosnumerics.11.dylib
> 
>> 
>> I’m on a centrally managed Mac, so OS update is not an option. Xcode, gcc, 
>> and Conda install are under my control.
>> 
>> Thanks,
>> 
>> Bill
>> 
>> ___
>> fipy mailing list
>> fipy@nist.gov
>> http://www.ctcms.nist.gov/fipy
>> [ NIST internal ONLY: https://email.nist.gov/mailman/listinfo/fipy ]
> 
> 
> ___
> fipy mailing list
> fipy@nist.gov
> http://www.ctcms.nist.gov/fipy
>  [ NIST internal ONLY: https://email.nist.gov/mailman/listinfo/fipy ]


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Re: PyTrilinos import error Mac OS

Re: PyTrilinos import error Mac OS

Re: PyTrilinos import error Mac OS

Re: PyTrilinos import error Mac OS

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