Re: Conda installation not working

2017-06-09 Thread Daniel Wheeler
Hi Adrian,

Sorry about the installation issues. I've started using FiPy in a
Docker instance where I fix all the version numbers of the
dependencies as I've had many issues like this. See,

https://github.com/wd15/extremefill2D-dockerize/blob/master/Dockerfile

Some of this Dockerfile has extra packages that aren't required for
FiPy, but it will give you a working version of FiPy.

Cheers,

Daniel

On Thu, Jun 8, 2017 at 10:52 AM, Adrian Jacobo
 wrote:
> Hi,
>
>   For some reason my fipy conda installation stopped running. I've
> removed it and installed it again but I keep getting the same error:
>
>  >>> import fipy
> Traceback (most recent call last):
>File "", line 1, in 
>File
> "/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/__init__.py",
> line 45, in 
>  from fipy.boundaryConditions import *
>File
> "/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/boundaryConditions/__init__.py",
> line 2, in 
>  from fipy.boundaryConditions.fixedFlux import *
>File
> "/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/boundaryConditions/fixedFlux.py",
> line 38, in 
>  from fipy.tools import numerix
>File
> "/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/tools/__init__.py",
> line 85, in 
>  serial, parallel = serialComm, parallelComm = _getComms()
>File
> "/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/tools/__init__.py",
> line 77, in _getComms
>  from fipy.tools.comms.dummyComm import DummyComm
>File
> "/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/tools/comms/dummyComm.py",
> line 37, in 
>  from fipy.tools import numerix
>File
> "/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/tools/numerix.py",
> line 76, in 
>  import numpy as NUMERIX
>File
> "/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/numpy/__init__.py",
> line 112, in 
>  from ._globals import ModuleDeprecationWarning,
> VisibleDeprecationWarning
> ImportError: No module named _globals
>
> I could trace the error to Numpy:
>
>   import numpy
> Traceback (most recent call last):
>File "", line 1, in 
>File
> "/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/numpy/__init__.py",
> line 112, in 
>  from ._globals import ModuleDeprecationWarning,
> VisibleDeprecationWarning
> ImportError: No module named _globals
>
> As far as I could figure out anaconda updated python to Python 2.7.13
> and the numpy version that ships with fipy is incompatible with this
> version. Could you update numpy in the anaconda installation? I tried to
> force numpy to update but couldn't.
>
> Thanks!
> Adrian.
>
>
> ___
> fipy mailing list
> fipy@nist.gov
> http://www.ctcms.nist.gov/fipy
>   [ NIST internal ONLY: https://email.nist.gov/mailman/listinfo/fipy ]



-- 
Daniel Wheeler
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Conda installation not working

2017-06-08 Thread Adrian Jacobo
Hi,

  For some reason my fipy conda installation stopped running. I've 
removed it and installed it again but I keep getting the same error:

 >>> import fipy
Traceback (most recent call last):
   File "", line 1, in 
   File 
"/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/__init__.py",
 
line 45, in 
 from fipy.boundaryConditions import *
   File 
"/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/boundaryConditions/__init__.py",
 
line 2, in 
 from fipy.boundaryConditions.fixedFlux import *
   File 
"/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/boundaryConditions/fixedFlux.py",
 
line 38, in 
 from fipy.tools import numerix
   File 
"/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/tools/__init__.py",
 
line 85, in 
 serial, parallel = serialComm, parallelComm = _getComms()
   File 
"/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/tools/__init__.py",
 
line 77, in _getComms
 from fipy.tools.comms.dummyComm import DummyComm
   File 
"/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/tools/comms/dummyComm.py",
 
line 37, in 
 from fipy.tools import numerix
   File 
"/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/fipy/tools/numerix.py",
 
line 76, in 
 import numpy as NUMERIX
   File 
"/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/numpy/__init__.py",
 
line 112, in 
 from ._globals import ModuleDeprecationWarning, 
VisibleDeprecationWarning
ImportError: No module named _globals

I could trace the error to Numpy:

  import numpy
Traceback (most recent call last):
   File "", line 1, in 
   File 
"/Users/ajacobo/anaconda/envs/fipyenv/lib/python2.7/site-packages/numpy/__init__.py",
 
line 112, in 
 from ._globals import ModuleDeprecationWarning, 
VisibleDeprecationWarning
ImportError: No module named _globals

As far as I could figure out anaconda updated python to Python 2.7.13 
and the numpy version that ships with fipy is incompatible with this 
version. Could you update numpy in the anaconda installation? I tried to 
force numpy to update but couldn't.

Thanks!
Adrian.


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