How to Fix Port Audit showing ports not installed on a system

2013-08-06 Thread dweimer
I have a system that I just recently setup port audit, after realizing I 
forgot to install it on the machine.  The problem is that it is finding 
vulnerabilities in several ports that are not installed on the  system.  
These may have been installed at   one  point and removed.  Firefox is 
one of the ones listed, I know that it was on the system previously, but 
was removed a few months back.  portmaster -l and pkg info don't list it 
as installed,  but port audit shows: firefox-20.0,1.  Where would 
portaudit be picking up these ports from?  Is there anyway to reset its  
database?


--
Thanks,
   Dean E. Weimer
   http://www.dweimer.net/
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Re: How to Fix Port Audit showing ports not installed on a system

2013-08-06 Thread Paul Macdonald

On 06/08/2013 17:25, dweimer wrote:
I have a system that I just recently setup port audit, after realizing 
I forgot to install it on the machine.  The problem is that it is 
finding vulnerabilities in several ports that are not installed on 
the  system.  These may have been installed at   one  point and 
removed.  Firefox is one of the ones listed, I know that it was on the 
system previously, but was removed a few months back.  portmaster -l 
and pkg info don't list it as installed,  but port audit shows: 
firefox-20.0,1.  Where would portaudit be picking up these ports 
from?  Is there anyway to reset its  database?



rm -R /var/db/portaudit/

then run portaudit -Fda


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Re: How to Fix Port Audit showing ports not installed on a system

2013-08-06 Thread dweimer

On 08/06/2013 11:58 am, Paul Macdonald wrote:

On 06/08/2013 17:25, dweimer wrote:
I have a system that I just recently setup port audit, after realizing 
I forgot to install it on the machine.  The problem is that it is 
finding vulnerabilities in several ports that are not installed on the 
 system.  These may have been installed at   one  point and removed.  
Firefox is one of the ones listed, I know that it was on the system 
previously, but was removed a few months back.  portmaster -l and pkg 
info don't list it as installed,  but port audit shows: 
firefox-20.0,1.  Where would portaudit be picking up these ports from? 
 Is there anyway to reset its  database?



rm -R /var/db/portaudit/

then run portaudit -Fda


--


Already tried that, but that data only contains the list of known 
vulnerabilities, not the installed ports/packages.  Perhaps, its not 
using pkgng I discovered if I do a pkg info command I get the correct 
list of installed ports and packages.  If I do a pkg_info I get a much 
larger list showing everything as corrupted.


...
pkg_info: the package info for package 'fftw3-3.3.3_1' is corrupt
pkg_info: the package info for package 'filelight-4.10.1' is corrupt
pkg_info: the package info for package 'firefox-20.0,1' is corrupt
pkg_info: the package info for package 'fixesproto-5.0' is corrupt
pkg_info: the package info for package 'flac-1.2.1_3' is corrupt
pkg_info: the package info for package 'flex-2.5.37_1' is corrupt
...

Of course I have WITH_PKGNG=YES in the make.conf, and I believe that 
has been there ever since the server was built.  Is my best option to 
get the correct list from pkg info use rm -r /var/db/pkg/* to clear 
everything out and then reinstall all of the ports?


--
Thanks,
   Dean E. Weimer
   http://www.dweimer.net/
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Re: How to Fix Port Audit showing ports not installed on a system

2013-08-06 Thread Matthew Seaman
On 06/08/2013 19:23, dweimer wrote:
 Of course I have WITH_PKGNG=YES in the make.conf, and I believe that
 has been there ever since the server was built.  Is my best option to
 get the correct list from pkg info use rm -r /var/db/pkg/* to clear
 everything out and then reinstall all of the ports?

If you've had WITH_PKGNG=YES ever since the server was built then you
shouldn't have any of the old-style pkg_tools entries in /var/db/pkg.

Unless, that is, you've been using pkg_add(1) directly.  Don't do that.
 You just end up with a complete mess.  Remember folks -- pkgng is like
getting married.  Once you go with pkgng, you're not meant to dally with
other package tools, but to stay faithful to pkgng from henceforth.

I hope you've got the old-style pkg_tools per-package subdirectories in
/var/db/pkg because either (i) you used to use pkg_tools and you ran
pkg2ng to convert or (ii) you've been using portmaster, in which case
those sub-directories only /look/ like the result of what pkg_tools
generates, but are really just a place for portmaster to stash a few things.

If those sub-directories contain files called thing like +CONTENTS or
+COMMENT or other names beginning with '+' then you do have a messed up
mixture of old pkg_tools and pkgng.

First: remove all the subdirectories but *not* local.sqlite or
repo.sqlite -- those are rather important bits of pkgng.
Then you can force a reinstall of all packages by

   pkg upgrade -f

Obviusly, you'll need pkg(8) configured to use a repo with all the
appropriate packages available.

Cheers,

Matthew

-- 
Dr Matthew J Seaman MA, D.Phil.
PGP: http://www.infracaninophile.co.uk/pgpkey




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Re: How to Fix Port Audit showing ports not installed on a system

2013-08-06 Thread dweimer

On 08/06/2013 2:55 pm, Matthew Seaman wrote:

On 06/08/2013 19:23, dweimer wrote:

Of course I have WITH_PKGNG=YES in the make.conf, and I believe that
has been there ever since the server was built.  Is my best option to
get the correct list from pkg info use rm -r /var/db/pkg/* to clear
everything out and then reinstall all of the ports?


If you've had WITH_PKGNG=YES ever since the server was built then you
shouldn't have any of the old-style pkg_tools entries in /var/db/pkg.

Unless, that is, you've been using pkg_add(1) directly.  Don't do that.
 You just end up with a complete mess.  Remember folks -- pkgng is like
getting married.  Once you go with pkgng, you're not meant to dally 
with

other package tools, but to stay faithful to pkgng from henceforth.

I hope you've got the old-style pkg_tools per-package subdirectories in
/var/db/pkg because either (i) you used to use pkg_tools and you ran
pkg2ng to convert or (ii) you've been using portmaster, in which case
those sub-directories only /look/ like the result of what pkg_tools
generates, but are really just a place for portmaster to stash a few 
things.


If those sub-directories contain files called thing like +CONTENTS or
+COMMENT or other names beginning with '+' then you do have a messed up
mixture of old pkg_tools and pkgng.

First: remove all the subdirectories but *not* local.sqlite or
repo.sqlite -- those are rather important bits of pkgng.
Then you can force a reinstall of all packages by

   pkg upgrade -f

Obviusly, you'll need pkg(8) configured to use a repo with all the
appropriate packages available.

Cheers,

Matthew


Thanks for the info, I have never used pkg_add, everything has been 
installed via ports and portmaster, but it is possible that some ports 
were installed prior to having the with pkgng added in make.conf, and 
that something happened in the pk2ng conversion.  I thought I had built 
this machine after I had been running with pkgng, but perhaps this one 
was built right as I was switching over to it.  I had originally built 
this machine with Xorg and KDE to use virtual box GUI, and once I became 
comfortable with the commands, switched to vboxheadless and removed all 
the GUI components.  Which is where all the extra ports that were 
removed came from.


I have removed the sub directories, now portaudit doesn't show any 
vulnerabilities in non existent ports, pkg info displays the correct 
installed packages, and portmaster -l matches the installed ports that 
pkg info displays.


--
Thanks,
   Dean E. Weimer
   http://www.dweimer.net/
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