Re: [Freesurfer] mris_glm-sess
Can you send me the directory that you are running it from? Also, what does it print out? Also, please send the log file (it is in the log directory). doug On Fri, 1 Oct 2004, Trinity Urban wrote: I'm trying to use mris_glm-ses for the first time but something is going wrong. It seems to run ok but there is no output file. What am I doing wrong? mris_glm-sess -hemi rh -projfrac 0.5 -fsgd test.fsgd -sf test.sessid -a individual_anal_FE -contrast allvfix_de --trgsubj average7 --gcv 1 -1 0 0 --sigt sigt-average7-rh.w paint ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Number: 617-724-2358 Fax: 617-726-7422 ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] license key
Hello, I received a license key by email, but cannot find where in the license it should go. Thanks, Margaret ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] license key
Hello, I received a license key by email, but cannot find where in the license it should go. Thanks, Margaret It should go in a file named .license and placed in your FREESURFER_HOME directory. Note the leading dot in the filename. -- Kevin Teich ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] flattening problems
Hi All, I'm new to FS and I'm having trouble with the flattening step. After making the cuts, the instructions in the FreeSurferGuide (p44) are to fill the non-midbrain regions and save the patch. 1. It's not clear to me what the difference is between the blue and the white fill. 2. I filled the non-midbrain areas (white fill) and did save patch as. But when I load the patch, I get back all the brain regions including the midbrain. In other words I can't seem to make a midbrain-free image that looks like the last figure on page 44. 3. When I try to flatten the brain, it processes the data for a while, but doesn't seem to produce a flattened image (I suspect because I can't get rid of the midbrain). Any ideas how I might solve these problems would be much appreciated. thanks, jack grinband ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
