[Freesurfer] The atlas specification
Hi, everybody. I am wondering the specification of the atlas which is used for surface registration. Please answer what kinds of subjects are used and how many subjects are used to generate the atlas included in Freesurfer. Or please tell me the link about the atlas specification. Sincerely, Youngsang Cho ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] problem of correction for multiple comparisons in sarfece based analyses
Dear Freesurfer users, Which is to most preferably correction for multiple comparisons when investigating surface based cortical thickness changes between groups in smoothed data. Furthermore subjects between groups are related in other words not independent from each other. It is not clear for me whether FDR or cluster wise correction is feasible in highly smoothed and data that does not fulfill the criteria of independence. Best wishes, Petra Habets [cid:image001.jpg@01CBEAD1.5ACD2790] Petra Habets PhD-Student School for Mental Health and Neuroscience p.hab...@maastrichtuniversity.nl mailto:p.hab...@maastrichtuniversity.nl www.maastrichtuniversity.nl http://www.maastrichtuniversity.nl Vijverdalseweg 1, 6226 NB Maastricht P.O. Box 616, 6200 MD Maastricht, The Netherlands T + 31 43 368 8659 F + 31 43 368 8689 Note: the email addresses have changed! [cid:image002.jpg@01CBEAD1.5ACD2790]Please consider your environmental responsibility before printing this e-mail. inline: image001.jpginline: image002.jpg___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] interactions
Dear Doug and FS experts, I would like to be sure that I've understood the rules for the following contrast in a 2x2x2 design with diagnosis (D1, D2), gender (Male, Female) and handedness (Left, Right) as discrete factors. D1MaleLeft D1MaleRight D1FemaleLeft D1FemaleRight D2MaleLeft D2MaleRight D2FemaleLeft D2FemaleRight interaction between Diagnosis, Gender, and handedness [ 1-1-1 1-1 1 1-1] interaction between Gender and handedness for D1 [ 1-1-1 1 0 0 0 0]/2 interaction between Gender and handedness for D2 [ 0 0 0 0-1 1 1-1]/2 interaction between Diagnosis and handedness for Males [ 1-10 0-1 1 00]/2 interaction between Diagnosis and handedness for Females [ 00 1-10 0 -11]/2 interaction between Diagnosis and Gender for Left [ 10-10-1 0 10]/2 interaction between Diagnosis and Gender for Right [ 01 0-10-1 01]/2 Many thanks in advance. Gabriel ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] OASIS-Brains processing with Freesurfer 5
Hi: I want to re-process some OASIS-BRAINS database images using FS 5. Must I use an recon-all option (because I want that FS use the CP specified) ?... Sincerely, -- Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica Las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
