Re: [Freesurfer] mri_cvs_register can not find

2011-11-06 Thread Martin Kavec 
Hi Lilla,

it seems that my linux system was not in consistent state. After
running some sanity checks and repairing some findings, the
mri_cvs_register is able to continue beyond the point where it used
crashed before.

Thanks,

Martin

On Fri, Nov 4, 2011 at 12:40 PM,  lzol...@nmr.mgh.harvard.edu wrote:
 Hi Martin,
 Could you give more details? Which version of mri-cvs-register are you using? 
 Was there a log file that you could share also?
 Thanks, Lilla
 --Original Message--
 From: Martin Kavec
 To: Freesurfer mailing list
 To: Lilla Zollei
 Subject: mri_cvs_register can not find
 Sent: Nov 4, 2011 03:44

 Hi all,

 I am trying to run mri_cvs_register but for some reasons it always
 terminates with:

 ERROR: Can not find or read
 $SUBJECTS_DIR/MY_SUBJECTS/cvs/combined_tocvs_avg35__elreg_aseg.m3z

 My command is as follows:

 mri_cvs_register --mov MY_SUBJECT

 Indeed the file is not there, but another one with the exactly the
 same name, but different suffix .tm3d is there.

 Anybody encountered similar problem? Any idea what can be wrong?

 Thanks in advance,

 Martin



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[Freesurfer] Affine Matrix Conversions

2011-11-06 Thread Matt Glasser 
Hi,

 

I am wondering what tools FreeSurfer has to convert between different affine
matrix formats.

 

For example, if I had a talairach.xfm that did a better job than
talairach.lta, is there a way to convert from one to the other?  What about
FSL FLIRT matricies?  Can these be interconverted with .lta?

 

Thanks,


Matt.

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