date:20170324

Re: [Freesurfer] error with mris_make_face_parcellation

2017-03-24 Thread Almarshad F.

Everything just disappear and the first line that I can see is this 

CTABannotationAtIndex: index -1 was OOB

-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu 
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: 24 March 2017 18:20
To: Freesurfer support list 
Subject: Re: [Freesurfer] error with mris_make_face_parcellation

can you send us say the first 10 lines of the output? This command runs fine 
for me on another dataset On Fri, 24 Mar 2017, Almarshad F. wrote:

> the command line exactly is this
>
> -DQ67SW:~/Downloads/tutorial_data/buckner_data/tutorial_subjs/004/surf
> $ mris_make_face_parcellation lh.sphere.reg 
> $FREESURFER_HOME/lib/bem/ic3.tri ./lh.ic3.annot
>
> and the output are many lines of this i coundt evevn copy them all
> "CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB"
>
> *** Error in `mris_make_face_parcellation': double free or corruption 
> (out): 0x02f7ad80 *** === Backtrace: = 
> /lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7ff2090be7e5]
> /lib/x86_64-linux-gnu/libc.so.6(+0x7fe0a)[0x7ff2090c6e0a]
> /lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7ff2090ca98c]
> mris_make_face_parcellation[0x41065b]
> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7ff209067830
> ]
> mris_make_face_parcellation[0x40b529]
> === Memory map: 
> 0040-00929000 r-xp  08:01 3020757
> /home/fatima/Downloads/freesurfer/bin/mris_make_face_parcellation
> 00b28000-00b66000 rw-p 00528000 08:01 3020757
> /home/fatima/Downloads/freesurfer/bin/mris_make_face_parcellation
> 00b66000-00b78000 rw-p  00:00 0
> 0247-07cb6000 rw-p  00:00 0  
> [heap]
> 7ff1fc00-7ff1fc021000 rw-p  00:00 0
> 7ff1fc021000-7ff2 ---p  00:00 0
> 7ff202566000-7ff20852f000 rw-p  00:00 0
> 7ff20852f000-7ff208807000 r--p  08:01 25821537   
> /usr/lib/locale/locale-archive
> 7ff208807000-7ff208812000 r-xp  08:01 2234171
> /lib/x86_64-linux-gnu/libnss_files-2.23.so
> 7ff208812000-7ff208a11000 ---p b000 08:01 2234171
> /lib/x86_64-linux-gnu/libnss_files-2.23.so
> 7ff208a11000-7ff208a12000 r--p a000 08:01 2234171
> /lib/x86_64-linux-gnu/libnss_files-2.23.so
> 7ff208a12000-7ff208a13000 rw-p b000 08:01 2234171
> /lib/x86_64-linux-gnu/libnss_files-2.23.so
> 7ff208a13000-7ff208a19000 rw-p  00:00 0
> 7ff208a19000-7ff208a24000 r-xp  08:01 2234164
> /lib/x86_64-linux-gnu/libnss_nis-2.23.so
> 7ff208a24000-7ff208c23000 ---p b000 08:01 2234164
> /lib/x86_64-linux-gnu/libnss_nis-2.23.so
> 7ff208c23000-7ff208c24000 r--p a000 08:01 2234164
> /lib/x86_64-linux-gnu/libnss_nis-2.23.so
> 7ff208c24000-7ff208c25000 rw-p b000 08:01 2234164
> /lib/x86_64-linux-gnu/libnss_nis-2.23.so
> 7ff208c25000-7ff208c3b000 r-xp  08:01 2234166
> /lib/x86_64-linux-gnu/libnsl-2.23.so
> 7ff208c3b000-7ff208e3a000 ---p 00016000 08:01 2234166
> /lib/x86_64-linux-gnu/libnsl-2.23.so
> 7ff208e3a000-7ff208e3b000 r--p 00015000 08:01 2234166
> /lib/x86_64-linux-gnu/libnsl-2.23.so
> 7ff208e3b000-7ff208e3c000 rw-p 00016000 08:01 2234166
> /lib/x86_64-linux-gnu/libnsl-2.23.so
> 7ff208e3c000-7ff208e3e000 rw-p  00:00 0
> 7ff208e3e000-7ff208e46000 r-xp  08:01 2234173
> /lib/x86_64-linux-gnu/libnss_compat-2.23.so
> 7ff208e46000-7ff209045000 ---p 8000 08:01 2234173
> /lib/x86_64-linux-gnu/libnss_compat-2.23.so
> 7ff209045000-7ff209046000 r--p 7000 08:01 2234173
> /lib/x86_64-linux-gnu/libnss_compat-2.23.so
> 7ff209046000-7ff209047000 rw-p 8000 08:01 2234173
> /lib/x86_64-linux-gnu/libnss_compat-2.23.so
> 7ff209047000-7ff209206000 r-xp  08:01 2234167
> /lib/x86_64-linux-gnu/libc-2.23.so
> 7ff209206000-7ff209406000 ---p 001bf000 08:01 2234167
> /lib/x86_64-linux-gnu/libc-2.23.so
> 7ff209406000-7ff20940a000 r--p 001bf000 08:01 2234167
> /lib/x86_64-linux-gnu/libc-2.23.so
> 7ff20940a000-7ff20940c000 rw-p 001c3000 08:01 2234167
> /lib/x86_64-linux-gnu/libc-2.23.so
> 7ff20940c000-7ff20941 rw-p  00:00 0
> 7ff20941-7ff209426000 r-xp  08:01

Re: [Freesurfer] error with mris_make_face_parcellation

2017-03-24 Thread Bruce Fischl

can you send us say the first 10 lines of the output? This command runs 
fine for me on another dataset
On Fri, 24 Mar 2017, Almarshad F. wrote:

> the command line exactly is this
>
> -DQ67SW:~/Downloads/tutorial_data/buckner_data/tutorial_subjs/004/surf$ 
> mris_make_face_parcellation lh.sphere.reg $FREESURFER_HOME/lib/bem/ic3.tri 
> ./lh.ic3.annot
>
> and the output are many lines of this i coundt evevn copy them all
> "CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB
> CTABannotationAtIndex: index -1 was OOB"
>
> *** Error in `mris_make_face_parcellation': double free or corruption (out): 
> 0x02f7ad80 ***
> === Backtrace: =
> /lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7ff2090be7e5]
> /lib/x86_64-linux-gnu/libc.so.6(+0x7fe0a)[0x7ff2090c6e0a]
> /lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7ff2090ca98c]
> mris_make_face_parcellation[0x41065b]
> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7ff209067830]
> mris_make_face_parcellation[0x40b529]
> === Memory map: 
> 0040-00929000 r-xp  08:01 3020757
> /home/fatima/Downloads/freesurfer/bin/mris_make_face_parcellation
> 00b28000-00b66000 rw-p 00528000 08:01 3020757
> /home/fatima/Downloads/freesurfer/bin/mris_make_face_parcellation
> 00b66000-00b78000 rw-p  00:00 0
> 0247-07cb6000 rw-p  00:00 0  
> [heap]
> 7ff1fc00-7ff1fc021000 rw-p  00:00 0
> 7ff1fc021000-7ff2 ---p  00:00 0
> 7ff202566000-7ff20852f000 rw-p  00:00 0
> 7ff20852f000-7ff208807000 r--p  08:01 25821537   
> /usr/lib/locale/locale-archive
> 7ff208807000-7ff208812000 r-xp  08:01 2234171
> /lib/x86_64-linux-gnu/libnss_files-2.23.so
> 7ff208812000-7ff208a11000 ---p b000 08:01 2234171
> /lib/x86_64-linux-gnu/libnss_files-2.23.so
> 7ff208a11000-7ff208a12000 r--p a000 08:01 2234171
> /lib/x86_64-linux-gnu/libnss_files-2.23.so
> 7ff208a12000-7ff208a13000 rw-p b000 08:01 2234171
> /lib/x86_64-linux-gnu/libnss_files-2.23.so
> 7ff208a13000-7ff208a19000 rw-p  00:00 0
> 7ff208a19000-7ff208a24000 r-xp  08:01 2234164
> /lib/x86_64-linux-gnu/libnss_nis-2.23.so
> 7ff208a24000-7ff208c23000 ---p b000 08:01 2234164
> /lib/x86_64-linux-gnu/libnss_nis-2.23.so
> 7ff208c23000-7ff208c24000 r--p a000 08:01 2234164
> /lib/x86_64-linux-gnu/libnss_nis-2.23.so
> 7ff208c24000-7ff208c25000 rw-p b000 08:01 2234164
> /lib/x86_64-linux-gnu/libnss_nis-2.23.so
> 7ff208c25000-7ff208c3b000 r-xp  08:01 2234166
> /lib/x86_64-linux-gnu/libnsl-2.23.so
> 7ff208c3b000-7ff208e3a000 ---p 00016000 08:01 2234166
> /lib/x86_64-linux-gnu/libnsl-2.23.so
> 7ff208e3a000-7ff208e3b000 r--p 00015000 08:01 2234166
> /lib/x86_64-linux-gnu/libnsl-2.23.so
> 7ff208e3b000-7ff208e3c000 rw-p 00016000 08:01 2234166
> /lib/x86_64-linux-gnu/libnsl-2.23.so
> 7ff208e3c000-7ff208e3e000 rw-p  00:00 0
> 7ff208e3e000-7ff208e46000 r-xp  08:01 2234173
> /lib/x86_64-linux-gnu/libnss_compat-2.23.so
> 7ff208e46000-7ff209045000 ---p 8000 08:01 2234173
> /lib/x86_64-linux-gnu/libnss_compat-2.23.so
> 7ff209045000-7ff209046000 r--p 7000 08:01 2234173
> /lib/x86_64-linux-gnu/libnss_compat-2.23.so
> 7ff209046000-7ff209047000 rw-p 8000 08:01 2234173
> /lib/x86_64-linux-gnu/libnss_compat-2.23.so
> 7ff209047000-7ff209206000 r-xp  08:01 2234167
> /lib/x86_64-linux-gnu/libc-2.23.so
> 7ff209206000-7ff209406000 ---p 001bf000 08:01 2234167
> /lib/x86_64-linux-gnu/libc-2.23.so
> 7ff209406000-7ff20940a000 r--p 001bf000 08:01 2234167
> /lib/x86_64-linux-gnu/libc-2.23.so
> 7ff20940a000-7ff20940c000 rw-p 001c3000 08:01 2234167
> /lib/x86_64-linux-gnu/libc-2.23.so
> 7ff20940c000-7ff20941 rw-p  00:00 0
> 7ff20941-7ff209426000 r-xp  08:01 2232765
> /lib/x86_64-linux-gnu/libgcc_s.so.1
> 7ff209426000-7ff209625000 ---p 00016000 08:01 2232765
> /lib/x86_64-linux-gnu/libgcc_s.so.1
> 7ff209625000-7ff209626000 rw-p 00015000 08:01 2232765
> /lib/x86_64-linux-gnu/libgcc_s.so.1
> 7ff209626000-7ff209647000 r-xp  08:01 25829649   
> /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0

Re: [Freesurfer] error with mris_make_face_parcellation

2017-03-24 Thread Almarshad F.

the command line exactly is this 

-DQ67SW:~/Downloads/tutorial_data/buckner_data/tutorial_subjs/004/surf$ 
mris_make_face_parcellation lh.sphere.reg $FREESURFER_HOME/lib/bem/ic3.tri 
./lh.ic3.annot

and the output are many lines of this i coundt evevn copy them all
"CTABannotationAtIndex: index -1 was OOB
CTABannotationAtIndex: index -1 was OOB
CTABannotationAtIndex: index -1 was OOB
CTABannotationAtIndex: index -1 was OOB
CTABannotationAtIndex: index -1 was OOB
CTABannotationAtIndex: index -1 was OOB
CTABannotationAtIndex: index -1 was OOB
CTABannotationAtIndex: index -1 was OOB
CTABannotationAtIndex: index -1 was OOB
CTABannotationAtIndex: index -1 was OOB"

*** Error in `mris_make_face_parcellation': double free or corruption (out): 
0x02f7ad80 ***
=== Backtrace: =
/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7ff2090be7e5]
/lib/x86_64-linux-gnu/libc.so.6(+0x7fe0a)[0x7ff2090c6e0a]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7ff2090ca98c]
mris_make_face_parcellation[0x41065b]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7ff209067830]
mris_make_face_parcellation[0x40b529]
=== Memory map: 
0040-00929000 r-xp  08:01 3020757
/home/fatima/Downloads/freesurfer/bin/mris_make_face_parcellation
00b28000-00b66000 rw-p 00528000 08:01 3020757
/home/fatima/Downloads/freesurfer/bin/mris_make_face_parcellation
00b66000-00b78000 rw-p  00:00 0 
0247-07cb6000 rw-p  00:00 0  [heap]
7ff1fc00-7ff1fc021000 rw-p  00:00 0 
7ff1fc021000-7ff2 ---p  00:00 0 
7ff202566000-7ff20852f000 rw-p  00:00 0 
7ff20852f000-7ff208807000 r--p  08:01 25821537   
/usr/lib/locale/locale-archive
7ff208807000-7ff208812000 r-xp  08:01 2234171
/lib/x86_64-linux-gnu/libnss_files-2.23.so
7ff208812000-7ff208a11000 ---p b000 08:01 2234171
/lib/x86_64-linux-gnu/libnss_files-2.23.so
7ff208a11000-7ff208a12000 r--p a000 08:01 2234171
/lib/x86_64-linux-gnu/libnss_files-2.23.so
7ff208a12000-7ff208a13000 rw-p b000 08:01 2234171
/lib/x86_64-linux-gnu/libnss_files-2.23.so
7ff208a13000-7ff208a19000 rw-p  00:00 0 
7ff208a19000-7ff208a24000 r-xp  08:01 2234164
/lib/x86_64-linux-gnu/libnss_nis-2.23.so
7ff208a24000-7ff208c23000 ---p b000 08:01 2234164
/lib/x86_64-linux-gnu/libnss_nis-2.23.so
7ff208c23000-7ff208c24000 r--p a000 08:01 2234164
/lib/x86_64-linux-gnu/libnss_nis-2.23.so
7ff208c24000-7ff208c25000 rw-p b000 08:01 2234164
/lib/x86_64-linux-gnu/libnss_nis-2.23.so
7ff208c25000-7ff208c3b000 r-xp  08:01 2234166
/lib/x86_64-linux-gnu/libnsl-2.23.so
7ff208c3b000-7ff208e3a000 ---p 00016000 08:01 2234166
/lib/x86_64-linux-gnu/libnsl-2.23.so
7ff208e3a000-7ff208e3b000 r--p 00015000 08:01 2234166
/lib/x86_64-linux-gnu/libnsl-2.23.so
7ff208e3b000-7ff208e3c000 rw-p 00016000 08:01 2234166
/lib/x86_64-linux-gnu/libnsl-2.23.so
7ff208e3c000-7ff208e3e000 rw-p  00:00 0 
7ff208e3e000-7ff208e46000 r-xp  08:01 2234173
/lib/x86_64-linux-gnu/libnss_compat-2.23.so
7ff208e46000-7ff209045000 ---p 8000 08:01 2234173
/lib/x86_64-linux-gnu/libnss_compat-2.23.so
7ff209045000-7ff209046000 r--p 7000 08:01 2234173
/lib/x86_64-linux-gnu/libnss_compat-2.23.so
7ff209046000-7ff209047000 rw-p 8000 08:01 2234173
/lib/x86_64-linux-gnu/libnss_compat-2.23.so
7ff209047000-7ff209206000 r-xp  08:01 2234167
/lib/x86_64-linux-gnu/libc-2.23.so
7ff209206000-7ff209406000 ---p 001bf000 08:01 2234167
/lib/x86_64-linux-gnu/libc-2.23.so
7ff209406000-7ff20940a000 r--p 001bf000 08:01 2234167
/lib/x86_64-linux-gnu/libc-2.23.so
7ff20940a000-7ff20940c000 rw-p 001c3000 08:01 2234167
/lib/x86_64-linux-gnu/libc-2.23.so
7ff20940c000-7ff20941 rw-p  00:00 0 
7ff20941-7ff209426000 r-xp  08:01 2232765
/lib/x86_64-linux-gnu/libgcc_s.so.1
7ff209426000-7ff209625000 ---p 00016000 08:01 2232765
/lib/x86_64-linux-gnu/libgcc_s.so.1
7ff209625000-7ff209626000 rw-p 00015000 08:01 2232765
/lib/x86_64-linux-gnu/libgcc_s.so.1
7ff209626000-7ff209647000 r-xp  08:01 25829649   
/usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0
7ff209647000-7ff209846000 ---p 00021000 08:01 25829649   
/usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0
7ff209846000-7ff209847000 r--p 0002 08:01 25829649   
/usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0
7ff209847000-7ff209848000 rw-p 00021000 08:01 25829649

Re: [Freesurfer] error with mris_make_face_parcellation

2017-03-24 Thread Douglas Greve

can you send the command line and the terminal output as plain text in 
the email?


On 3/24/17 1:50 PM, Almarshad F. wrote:
> ~/Downloads/tutorial_data/buckner_data/tutorial_subjs/004/surf$ 
> mris_make_face_parcellation lh.sphere.reg $FREESURFER_HOME/lib/bem/ic3.tri 
> ./lh.ic3.annot
> 
> From: freesurfer-boun...@nmr.mgh.harvard.edu 
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl 
> [fis...@nmr.mgh.harvard.edu]
> Sent: Friday, March 24, 2017 5:48 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] error with mris_make_face_parcellation
>
> can you just send it as text? Screen shots are not nearly as useful for
> us
> On Fri, 24 Mar 2017, Almarshad F. wrote:
>
>> i attached a screen shot of the command and the output
>>
>>
>> mris_make_face_parcellation lh.sphere.reg $FREESURFER_HOME/lib/bem/ic3.tri 
>> ./lh.ic3.annot
>> 
>> From: freesurfer-boun...@nmr.mgh.harvard.edu 
>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl 
>> [fis...@nmr.mgh.harvard.edu]
>> Sent: Friday, March 24, 2017 5:15 PM
>> To: Freesurfer support list
>> Subject: Re: [Freesurfer] error with mris_make_face_parcellation
>>
>> can you please send your complete command line and all screen output?
>>
>> thanks
>> Bruce
>> On
>> Fri, 24 Mar 2017, Almarshad F. wrote:
>>
>>> With the ?h.sphere it gives the message (INFO: CATBunique( ) could not find
>>> a unique set in 100 tries) !
>>>
>>>
>>>
>>>
>>>
>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve
>>> Sent: 24 March 2017 16:20
>>> To: freesurfer@nmr.mgh.harvard.edu
>>> Subject: Re: [Freesurfer] error with mris_make_face_parcellation
>>>
>>>
>>>
>>> what are you using as lh.surf? It should be ?h.sphere or ?h.sphere.reg
>>>
>>>
>>>
>>> On 3/24/17 12:12 PM, Almarshad F. wrote:
>>>
>>> Hi freesurfer's experts;
>>>
>>>
>>>
>>>
>>>
>>> I was trying to use mris_make_face_parcellation lh.surf $FREESURFER_HOME/lib
>>> /bem/ic3.tri ./lh.ic3.annot to generate uniform-sized parcellation  ..
>>>
>>>
>>>
>>> but i get the following error
>>>
>>>
>>>
>>>
>>>
>>> *** Error in `mris_make_face_parcellation': double free or corruption (out):
>>>   0x03fec560 ***
>>>
>>> === Backtrace: =
>>>
>>> /lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f96d00ef7e5]
>>>
>>> /lib/x86_64-linux-gnu/libc.so.6(+0x7fe0a)[0x7f96d00f7e0a]
>>>
>>> /lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7f96d00fb98c]
>>>
>>> mris_make_face_parcellation[0x41065b]
>>>
>>> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f96d0098830]
>>>
>>> mris_make_face_parcellation[0x40b529]
>>>
>>>
>>>
>>> i also attached the log file
>>>
>>>
>>>
>>> kidest regards,
>>>
>>> fatima
>>>
>>>
>>>
>>>
>>>
>>>
>>> ___
>>>
>>> Freesurfer mailing list
>>>
>>> Freesurfer@nmr.mgh.harvard.edu
>>>
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>>
>>>
>>>
>>>
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Re: [Freesurfer] error with mris_make_face_parcellation

2017-03-24 Thread Almarshad F.

~/Downloads/tutorial_data/buckner_data/tutorial_subjs/004/surf$ 
mris_make_face_parcellation lh.sphere.reg $FREESURFER_HOME/lib/bem/ic3.tri 
./lh.ic3.annot

From: freesurfer-boun...@nmr.mgh.harvard.edu 
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl 
[fis...@nmr.mgh.harvard.edu]
Sent: Friday, March 24, 2017 5:48 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] error with mris_make_face_parcellation

can you just send it as text? Screen shots are not nearly as useful for
us
On Fri, 24 Mar 2017, Almarshad F. wrote:

> i attached a screen shot of the command and the output
>
>
> mris_make_face_parcellation lh.sphere.reg $FREESURFER_HOME/lib/bem/ic3.tri 
> ./lh.ic3.annot
> 
> From: freesurfer-boun...@nmr.mgh.harvard.edu 
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl 
> [fis...@nmr.mgh.harvard.edu]
> Sent: Friday, March 24, 2017 5:15 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] error with mris_make_face_parcellation
>
> can you please send your complete command line and all screen output?
>
> thanks
> Bruce
> On
> Fri, 24 Mar 2017, Almarshad F. wrote:
>
>>
>> With the ?h.sphere it gives the message (INFO: CATBunique( ) could not find
>> a unique set in 100 tries) !
>>
>>
>>
>>
>>
>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve
>> Sent: 24 March 2017 16:20
>> To: freesurfer@nmr.mgh.harvard.edu
>> Subject: Re: [Freesurfer] error with mris_make_face_parcellation
>>
>>
>>
>> what are you using as lh.surf? It should be ?h.sphere or ?h.sphere.reg
>>
>>
>>
>> On 3/24/17 12:12 PM, Almarshad F. wrote:
>>
>> Hi freesurfer's experts;
>>
>>
>>
>>
>>
>> I was trying to use mris_make_face_parcellation lh.surf $FREESURFER_HOME/lib
>> /bem/ic3.tri ./lh.ic3.annot to generate uniform-sized parcellation  ..
>>
>>
>>
>> but i get the following error
>>
>>
>>
>>
>>
>> *** Error in `mris_make_face_parcellation': double free or corruption (out):
>>  0x03fec560 ***
>>
>> === Backtrace: =
>>
>> /lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f96d00ef7e5]
>>
>> /lib/x86_64-linux-gnu/libc.so.6(+0x7fe0a)[0x7f96d00f7e0a]
>>
>> /lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7f96d00fb98c]
>>
>> mris_make_face_parcellation[0x41065b]
>>
>> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f96d0098830]
>>
>> mris_make_face_parcellation[0x40b529]
>>
>>
>>
>> i also attached the log file
>>
>>
>>
>> kidest regards,
>>
>> fatima
>>
>>
>>
>>
>>
>>
>> ___
>>
>> Freesurfer mailing list
>>
>> Freesurfer@nmr.mgh.harvard.edu
>>
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>>
>>
>>
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Re: [Freesurfer] error with mris_make_face_parcellation

2017-03-24 Thread Bruce Fischl

can you just send it as text? Screen shots are not nearly as useful for 
us
On Fri, 24 Mar 2017, Almarshad F. wrote:

> i attached a screen shot of the command and the output
>
>
> mris_make_face_parcellation lh.sphere.reg $FREESURFER_HOME/lib/bem/ic3.tri 
> ./lh.ic3.annot
> 
> From: freesurfer-boun...@nmr.mgh.harvard.edu 
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl 
> [fis...@nmr.mgh.harvard.edu]
> Sent: Friday, March 24, 2017 5:15 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] error with mris_make_face_parcellation
>
> can you please send your complete command line and all screen output?
>
> thanks
> Bruce
> On
> Fri, 24 Mar 2017, Almarshad F. wrote:
>
>>
>> With the ?h.sphere it gives the message (INFO: CATBunique( ) could not find
>> a unique set in 100 tries) !
>>
>>
>>
>>
>>
>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve
>> Sent: 24 March 2017 16:20
>> To: freesurfer@nmr.mgh.harvard.edu
>> Subject: Re: [Freesurfer] error with mris_make_face_parcellation
>>
>>
>>
>> what are you using as lh.surf? It should be ?h.sphere or ?h.sphere.reg
>>
>>
>>
>> On 3/24/17 12:12 PM, Almarshad F. wrote:
>>
>> Hi freesurfer's experts;
>>
>>
>>
>>
>>
>> I was trying to use mris_make_face_parcellation lh.surf $FREESURFER_HOME/lib
>> /bem/ic3.tri ./lh.ic3.annot to generate uniform-sized parcellation  ..
>>
>>
>>
>> but i get the following error
>>
>>
>>
>>
>>
>> *** Error in `mris_make_face_parcellation': double free or corruption (out):
>>  0x03fec560 ***
>>
>> === Backtrace: =
>>
>> /lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f96d00ef7e5]
>>
>> /lib/x86_64-linux-gnu/libc.so.6(+0x7fe0a)[0x7f96d00f7e0a]
>>
>> /lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7f96d00fb98c]
>>
>> mris_make_face_parcellation[0x41065b]
>>
>> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f96d0098830]
>>
>> mris_make_face_parcellation[0x40b529]
>>
>>
>>
>> i also attached the log file
>>
>>
>>
>> kidest regards,
>>
>> fatima
>>
>>
>>
>>
>>
>>
>> ___
>>
>> Freesurfer mailing list
>>
>> Freesurfer@nmr.mgh.harvard.edu
>>
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>>
>>
>>
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Re: [Freesurfer] Defect Holes different between scans in same subject

2017-03-24 Thread Brad Matushewski

Not that I specifically compared.

-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu 
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: March 24, 2017 11:58 AM
To: Freesurfer support list 
Subject: Re: [Freesurfer] Defect Holes different between scans in same subject

Hi Brad

number of defects is probably a pretty unstable measure. You can change the 
segmentation of a single WM voxel and cause a defect to appear/disappear. You 
can also have differences in scan quality due to e.g. motion that can change 
things. Are the scan visually of different CNR?

cheers
Bruce
On Fri, 24 Mar 2017, Brad Matushewski wrote:

> 
>  
> 
> We have a study where subjects are scanned one, and a second time 6 
> months later.  I am looking for changes between the two time point and 
> often times there is a large difference in the “number of defect holes prior 
> to fixing”
> within the same subject.
> 
>  
> 
> Can anyone comment on the significance of this?  Given the same brain 
> being scanned 6 months later, how / why is there such a difference?
> 
>  
> 
>  
> 
> Logo
> 
> Brad J. Matushewski, M.Sc., R.Kin., CSEP-CEP.
> 
> Laboratory for Brain & Heart Health
> School of Kinesiology
> Western University
> Room 402, Arthur & Sonia Labatt Health Sciences Building London, ON, 
> Canada, N6A 5B9
> Tel: (519) 661-2111 x 89066
> Fax: (519) 850-2447
> 
>  
> 
> 
>

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Re: [Freesurfer] error with mris_make_face_parcellation

2017-03-24 Thread Bruce Fischl


can you please send your complete command line and all screen output?

thanks
Bruce
On 
Fri, 24 Mar 2017, Almarshad F. wrote:




With the ?h.sphere it gives the message (INFO: CATBunique( ) could not find
a unique set in 100 tries) !

 

 

From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve
Sent: 24 March 2017 16:20
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] error with mris_make_face_parcellation

 

what are you using as lh.surf? It should be ?h.sphere or ?h.sphere.reg

 

On 3/24/17 12:12 PM, Almarshad F. wrote:

Hi freesurfer's experts;

 

 

I was trying to use mris_make_face_parcellation lh.surf $FREESURFER_HOME/lib
/bem/ic3.tri ./lh.ic3.annot to generate uniform-sized parcellation  ..

 

but i get the following error

 

 

*** Error in `mris_make_face_parcellation': double free or corruption (out):
 0x03fec560 ***

=== Backtrace: =

/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f96d00ef7e5]

/lib/x86_64-linux-gnu/libc.so.6(+0x7fe0a)[0x7f96d00f7e0a]

/lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7f96d00fb98c]

mris_make_face_parcellation[0x41065b]

/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f96d0098830]

mris_make_face_parcellation[0x40b529]

 

i also attached the log file

 

kidest regards,

fatima

 




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Re: [Freesurfer] error with mris_make_face_parcellation

2017-03-24 Thread Almarshad F.

With the ?h.sphere it gives the message (INFO: CATBunique( ) could not find a 
unique set in 100 tries) !

From: freesurfer-boun...@nmr.mgh.harvard.edu 
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve
Sent: 24 March 2017 16:20
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] error with mris_make_face_parcellation

what are you using as lh.surf? It should be ?h.sphere or ?h.sphere.reg

On 3/24/17 12:12 PM, Almarshad F. wrote:

Hi freesurfer's experts;

I was trying to use mris_make_face_parcellation lh.surf 
$FREESURFER_HOME/lib/bem/ic3.tri ./lh.ic3.annot to generate uniform-sized 
parcellation  ..

but i get the following error

*** Error in `mris_make_face_parcellation': double free or corruption (out): 
0x03fec560 ***

=== Backtrace: =

/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f96d00ef7e5]

/lib/x86_64-linux-gnu/libc.so.6(+0x7fe0a)[0x7f96d00f7e0a]

/lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7f96d00fb98c]

mris_make_face_parcellation[0x41065b]

/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f96d0098830]

mris_make_face_parcellation[0x40b529]

i also attached the log file

kidest regards,

fatima

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[Freesurfer] use mris_make_face_parcellation

2017-03-24 Thread Almarshad F.

Hi freesurfer's experts;


I was trying to use mris_make_face_parcellation lh.surf 
$FREESURFER_HOME/lib/bem/ic3.tri ./lh.ic3.annot to generate uniform-sized 
parcellation  ..

but i get the following error


*** Error in `mris_make_face_parcellation': double free or corruption (out): 
0x03fec560 ***
=== Backtrace: =
/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f96d00ef7e5]
/lib/x86_64-linux-gnu/libc.so.6(+0x7fe0a)[0x7f96d00f7e0a]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7f96d00fb98c]
mris_make_face_parcellation[0x41065b]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f96d0098830]
mris_make_face_parcellation[0x40b529]

i also attached the log file in other email but it has been held as it is too 
big

kindest regards,
Fatima




Yours sincerely,
Fatima




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Re: [Freesurfer] error with mris_make_face_parcellation

2017-03-24 Thread Douglas Greve


what are you using as lh.surf? It should be ?h.sphere or ?h.sphere.reg


On 3/24/17 12:12 PM, Almarshad F. wrote:

Hi freesurfer's experts;


I was trying to use mris_make_face_parcellation lh.surf 
$FREESURFER_HOME/lib/bem/ic3.tri ./lh.ic3.annot to generate uniform-sized 
parcellation  ..

but i get the following error


*** Error in `mris_make_face_parcellation': double free or corruption (out): 
0x03fec560 ***
=== Backtrace: =
/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f96d00ef7e5]
/lib/x86_64-linux-gnu/libc.so.6(+0x7fe0a)[0x7f96d00f7e0a]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7f96d00fb98c]
mris_make_face_parcellation[0x41065b]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f96d0098830]
mris_make_face_parcellation[0x40b529]

i also attached the log file

kidest regards,
fatima



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Re: [Freesurfer] Defect Holes different between scans in same subject

2017-03-24 Thread Bruce Fischl


Hi Brad

number of defects is probably a pretty unstable measure. You can change 
the segmentation of a single WM voxel and cause a defect to 
appear/disappear. You can also have differences in scan quality due to 
e.g. motion that can change things. Are the scan visually of different 
CNR?


cheers
Bruce
On Fri, 24 Mar 2017, Brad Matushewski wrote:



 

We have a study where subjects are scanned one, and a second time 6 months
later.  I am looking for changes between the two time point and often times
there is a large difference in the “number of defect holes prior to fixing”
within the same subject. 

 

Can anyone comment on the significance of this?  Given the same brain being
scanned 6 months later, how / why is there such a difference?

 

 

Logo

Brad J. Matushewski, M.Sc., R.Kin., CSEP-CEP.

Laboratory for Brain & Heart Health
School of Kinesiology
Western University
Room 402, Arthur & Sonia Labatt Health Sciences Building
London, ON, Canada, N6A 5B9
Tel: (519) 661-2111 x 89066
Fax: (519) 850-2447

 


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[Freesurfer] Defect Holes different between scans in same subject

2017-03-24 Thread Brad Matushewski


We have a study where subjects are scanned one, and a second time 6 months 
later.  I am looking for changes between the two time point and often times 
there is a large difference in the "number of defect holes prior to fixing" 
within the same subject.

Can anyone comment on the significance of this?  Given the same brain being 
scanned 6 months later, how / why is there such a difference?


[Logo]
Brad J. Matushewski, M.Sc., R.Kin., CSEP-CEP.
Laboratory for Brain & Heart Health
School of Kinesiology
Western University
Room 402, Arthur & Sonia Labatt Health Sciences Building
London, ON, Canada, N6A 5B9
Tel: (519) 661-2111 x 89066
Fax: (519) 850-2447

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Re: [Freesurfer] Qdec 1.5

2017-03-24 Thread Douglas Greve

does that file exist? If it does, look at its contents and compare it to 
others in terms of size


On 3/24/17 9:11 AM, Duy Nguyen wrote:
> Dear Doughlas
>
> When I tried to run the aparcstats2table command, it shows the following
> error in the terminal window:
> SUBJECTS_DIR : /home/toibigi2007/Desktop
> Parsing the .stats files
> ERROR: The stats file
> /home/toibigi2007/Desktop/004/stats/lh.aparc.stats is not found or is
> too small to be a valid statsfile
> Use --skip flag to automatically skip bad stats files
>
> The group of subjects is from the tutorial data set.
> Please help me sort this out.
>
> Thank you and best regards,
>
>
> *--v-- Peace --v--*
> *Duy Nguyễn *
> *Biomedical Engineering Department- IU HCMC*
> *Cell: (+84)90056*
> *Email: duy.nguyen...@gmail.com *
>
> On Thu, Mar 23, 2017 at 10:23 PM, Douglas N Greve > wrote:
>> need more info
>>
>>
>> On 03/22/2017 09:37 PM, Duy Nguyen wrote:
>>> Dear Douglas
>>>
>>> Thank you for your response.  I cannot run asegstats2table and
>>> aparcstats2table command outside of qdec.
>>>
>>> Best regards,
>>> Duy Nguyen
>>>
>>> *--v-- Peace --v--*
>>> *Duy Nguyễn *
>>> *Biomedical Engineering Department- IU HCMC*
>>> *Cell: (+84)90056*
>>> *Email: duy.nguyen...@gmail.com *
>>>
>>> On Thu, Mar 23, 2017 at 5:07 AM, Douglas Greve
>>> > wrote:
>>>
>>>  don't know what is going on there. Can you run the asegstats2table
>>>  command outside of qdec?
>>>
>>>
>>>  On 3/17/17 8:29 AM, Duy Nguyen wrote:
  Dear FS Expert

  I am doing analysis from the group_analysis_tutorial data to
  practice and learn.  However, I come across the error window like
  it shows on the attached picture (please see the attachment) when
  I press the button "Generate Stats Data Table." Please help me
  how can I can find the file aseg.volume.stats.dat. If the file
  does not exist, how can I create one?

  Thank you for your response. Any help would be appreciated!!!
  *--v-- Peace --v--*
  *Duy Nguyễn *
  *Biomedical Engineering Department- IU HCMC*
  *Cell: (+84)90056*
  *Email: duy.nguyen...@gmail.com *


  ___
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>>>  ___ Freesurfer mailing
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>>>  
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>>>   The
>>>  information in this e-mail is intended only for the person to whom
>>>  it is addressed. If you believe this e-mail was sent to you in
>>>  error and the e-mail contains patient information, please contact
>>>  the Partners Compliance HelpLine at
>>>  http://www.partners.org/complianceline
>>>   . If the e-mail was sent
>>>  to you in error but does not contain patient information, please
>>>  contact the sender and properly dispose of the e-mail.
>>>
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>> --
>> Douglas N. Greve, Ph.D.
>> MGH-NMR Center
>> gr...@nmr.mgh.harvard.edu
>> Phone Number: 617-724-2358
>> Fax: 617-726-7422
>>
>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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Re: [Freesurfer] Longitudinal: obtain rigid registration matrix from cross to long subject

2017-03-24 Thread Yendiki, Anastasia

They're under $base/mri/transforms/*.lta.

From: freesurfer-boun...@nmr.mgh.harvard.edu 
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Matthieu Vanhoutte 
[matthieuvanhou...@gmail.com]
Sent: Friday, March 24, 2017 10:43 AM
To: Freesurfer support list
Subject: [Freesurfer] Longitudinal: obtain rigid registration matrix from cross 
to long subject

Dear Freesurfer's experts,

I would like to obtain the rigid registration matrix of the transformation 
between cross and long subject. Where could I find this (.dat or .lta file) ?

Best regards,
Matthieu
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Re: [Freesurfer] Longitudinal: obtain rigid registration matrix from cross to long subject

2017-03-24 Thread Matthieu Vanhoutte

Thank you Anastasia.

Best regards,
Matthieu

2017-03-24 15:50 GMT+01:00 Yendiki, Anastasia :

> They're under $base/mri/transforms/*.lta.
>
> --
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu [
> freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Matthieu Vanhoutte [
> matthieuvanhou...@gmail.com]
> *Sent:* Friday, March 24, 2017 10:43 AM
> *To:* Freesurfer support list
> *Subject:* [Freesurfer] Longitudinal: obtain rigid registration matrix
> from cross to long subject
>
> Dear Freesurfer's experts,
>
> I would like to obtain the rigid registration matrix of the transformation
> between cross and long subject. Where could I find this (.dat or .lta file)
> ?
>
> Best regards,
> Matthieu
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
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[Freesurfer] Longitudinal: obtain rigid registration matrix from cross to long subject

2017-03-24 Thread Matthieu Vanhoutte

Dear Freesurfer's experts,

I would like to obtain the rigid registration matrix of the transformation
between cross and long subject. Where could I find this (.dat or .lta file)
?

Best regards,
Matthieu
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


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but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] Freesurfer for PET images

2017-03-24 Thread Bruce Fischl


yes, you need a reasonably high res T1 (around 1mm iostropic)
cheers
Bruce
On Fri, 24 Mar 
2017, shi yao wang wrote:



Dear FS experts: 
We have a few PET images for brain. Just wondering if FS can be used to
measure brain volume? Do I have to have T1 MRI as reference?
thanks
Lawrence 

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[Freesurfer] Freesurfer for PET images

2017-03-24 Thread shi yao wang

Dear FS experts:
We have a few PET images for brain. Just wondering if FS can be used to
measure brain volume? Do I have to have T1 MRI as reference?

thanks
Lawrence
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Re: [Freesurfer] Qdec 1.5

2017-03-24 Thread Duy Nguyen

Dear Doughlas

When I tried to run the aparcstats2table command, it shows the following
error in the terminal window:
SUBJECTS_DIR : /home/toibigi2007/Desktop
Parsing the .stats files
ERROR: The stats file
/home/toibigi2007/Desktop/004/stats/lh.aparc.stats is not found or is
too small to be a valid statsfile
Use --skip flag to automatically skip bad stats files

The group of subjects is from the tutorial data set.
Please help me sort this out.

Thank you and best regards,


*--v-- Peace --v--*
*Duy Nguyễn *
*Biomedical Engineering Department- IU HCMC*
*Cell: (+84)90056*
*Email: duy.nguyen...@gmail.com *

On Thu, Mar 23, 2017 at 10:23 PM, Douglas N Greve  wrote:

> need more info
>
>
> On 03/22/2017 09:37 PM, Duy Nguyen wrote:
> > Dear Douglas
> >
> > Thank you for your response.  I cannot run asegstats2table and
> > aparcstats2table command outside of qdec.
> >
> > Best regards,
> > Duy Nguyen
> >
> > *--v-- Peace --v--*
> > *Duy Nguyễn *
> > *Biomedical Engineering Department- IU HCMC*
> > *Cell: (+84)90056*
> > *Email: duy.nguyen...@gmail.com *
> >
> > On Thu, Mar 23, 2017 at 5:07 AM, Douglas Greve
> > > wrote:
> >
> > don't know what is going on there. Can you run the asegstats2table
> > command outside of qdec?
> >
> >
> > On 3/17/17 8:29 AM, Duy Nguyen wrote:
> >> Dear FS Expert
> >>
> >> I am doing analysis from the group_analysis_tutorial data to
> >> practice and learn.  However, I come across the error window like
> >> it shows on the attached picture (please see the attachment) when
> >> I press the button "Generate Stats Data Table." Please help me
> >> how can I can find the file aseg.volume.stats.dat. If the file
> >> does not exist, how can I create one?
> >>
> >> Thank you for your response. Any help would be appreciated!!!
> >> *--v-- Peace --v--*
> >> *Duy Nguyễn *
> >> *Biomedical Engineering Department- IU HCMC*
> >> *Cell: (+84)90056*
> >> *Email: duy.nguyen...@gmail.com *
> >>
> >>
> >> ___
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> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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Re: [Freesurfer] error with mris_make_face_parcellation

Re: [Freesurfer] error with mris_make_face_parcellation

Re: [Freesurfer] error with mris_make_face_parcellation

Re: [Freesurfer] error with mris_make_face_parcellation

Re: [Freesurfer] error with mris_make_face_parcellation

Re: [Freesurfer] error with mris_make_face_parcellation

Re: [Freesurfer] Defect Holes different between scans in same subject

Re: [Freesurfer] error with mris_make_face_parcellation

Re: [Freesurfer] error with mris_make_face_parcellation

[Freesurfer] use mris_make_face_parcellation

Re: [Freesurfer] error with mris_make_face_parcellation

Re: [Freesurfer] Defect Holes different between scans in same subject

[Freesurfer] Defect Holes different between scans in same subject

Re: [Freesurfer] Qdec 1.5

Re: [Freesurfer] Longitudinal: obtain rigid registration matrix from cross to long subject

Re: [Freesurfer] Longitudinal: obtain rigid registration matrix from cross to long subject

[Freesurfer] Longitudinal: obtain rigid registration matrix from cross to long subject

Re: [Freesurfer] Freesurfer for PET images

[Freesurfer] Freesurfer for PET images

Re: [Freesurfer] Qdec 1.5

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