[Freesurfer] Postdoc position at the University of Delaware: infant + adolescent fMRI, ANS, EEG

2022-02-02 Thread Korom, Marta 
External Email - Use Caution

Postdoc with Mary Dozier's Attachment and Biobehavioral Catch-up Lab

January 24, 2022

The Attachment and Biobehavioral Catch-Up (ABC) Lab, supervised by Mary
Dozier at the University of Delaware (UD), is looking to hire a
postdoctoral fellow. The position involves working on one of two randomized
clinical trials (RCT) that test the efficacy of an early home visiting
intervention (ABC). In one of the RCTs, mothers using opioids and their
infants are currently being enrolled. Autonomic nervous system regulation,
brain activation (using event related potentials and MRI), cortisol
regulation, DNA methylation, attachment, and behavioral regulation are
among the variables assessed. The second study assesses adolescents who
were first enrolled in an RCT in infancy. All adolescents are scanned at
ages 13, 14, and 15, and additional behavioral constructs (inhibitory
control, emotion regulation, attachment/affiliation) are assessed.



The postdoctoral fellow will be responsible for overseeing research
activities. Prior experience with MRI data collection and processing is
preferred but not required. This is a full-time benefited position. Salary
will follow the NIH postdoc salary scale.



Ph.D. required by position start date, preferably in Clinical Psychology,
Developmental Psychology, Behavioral Neuroscience, or related field. Strong
organizational and interpersonal skills are essential.



The position start date is flexible, with a preferred start date in the
spring or early summer of 2022. Please send CV and letter of interest to
Mary Dozier, mdoz...@udel.edu.



More information about the ABC Lab can be found at
http://secure-web.cisco.com/1ZTIbTpjH9xQmnw0jjuklLDV1Tav0r5BUlVZbIeqDHOc3ZFl_VChvZTVEJK7n39mc1hzze6SLaMZMZrEtEPS464A_ohLIU_so7MM-YNLh_Dv3ZpIPwi-nlKJkDN3POufH19JO2L1mqm3gJPqZl-3Cxbc38WlcUifD4TBCsaXkrD_UFT85uFzKeGAXQABhSUKMrbMvW1LMDaPhBkBwiECca1ElQcHi-WpNr4JcRgr5bHjo3z9LqRglm8JRoYiSmzVf1Fra8cBgyNZs1P-v82YoDR_kyOvwZwSu7eSnYIv5YmbXJwaattdS_VhN3LeXE0el/http%3A%2F%2Fwww.abcintervention.org%2F

-- 
*Marta Korom  |  *PhD Candidate
University of Delaware, Clinical Science
e-mail: mko...@udel.edu
phone: 646 861 8461
http://secure-web.cisco.com/1ZTIbTpjH9xQmnw0jjuklLDV1Tav0r5BUlVZbIeqDHOc3ZFl_VChvZTVEJK7n39mc1hzze6SLaMZMZrEtEPS464A_ohLIU_so7MM-YNLh_Dv3ZpIPwi-nlKJkDN3POufH19JO2L1mqm3gJPqZl-3Cxbc38WlcUifD4TBCsaXkrD_UFT85uFzKeGAXQABhSUKMrbMvW1LMDaPhBkBwiECca1ElQcHi-WpNr4JcRgr5bHjo3z9LqRglm8JRoYiSmzVf1Fra8cBgyNZs1P-v82YoDR_kyOvwZwSu7eSnYIv5YmbXJwaattdS_VhN3LeXE0el/http%3A%2F%2Fwww.abcintervention.org%2F
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Recon-all reconstructed image coordinates

2022-02-02 Thread Salar Dini, Elaheh 
External Email - Use Caution

Hi all,

I just wanted to follow-up on this message with one extra piece of information 
added:

The two brains are exactly identical. Considering that we have two identical 
reconstructed brains (exactly the same as each other), with the only difference 
being that one of them is a little bit shifted and rotated in comparison to the 
other one, if there a way to measure the amount of this rotation and shift? If 
yes, can this information be used to counteract this rotation and shift? In 
other words, can we rotate and shift the second brain back in the exact 
opposite direction, so it completely overlays the first brain using freesurfer?

Thank you and all the best,
Ela

From: Salar Dini, Elaheh
Sent: Monday, January 31, 2022 6:46 PM
To: Freesurfer support list 
Subject: Recon-all reconstructed image coordinates

Dear Freesurfer developers,
 In the link below, you see two brains belonging to the same subject:

https://secure-web.cisco.com/1NWflVFwpPzLHCFaPUaWGJm7LXUzRcOtfnS1v2S2jf9YnLt6Rzus9ZuAZ6xJTpf6y9xO9P3iTGNemM60KZruigxVGVmaFQs62kgRbwS1E6Mo1eZwTzNZowsX0acdSHsL56-BRum1pT8OQRTExS-IW86GzaedHOgl4a-FSBcijH6_xAJUq83RNXgPDCKsuQtJh8Un1OIZG6GNCOs8JgwPNSftmFoSk0saftI2OMSsgZaNtkF8LxY25PCtxLQJ5nuQJdAM6vpkq9U4KMuH9de5NMoicfg2OgOh6UnOH8-KwcZSBUxt6CBz4_GMdKk0a2yZUy1N7ATye9d6rPF3k6VsCFw/https%3A%2F%2Fwww.dropbox.com%2Fs%2Fc2gsp8h8jj7c93d%2FScreen%2520Shot%25202022-01-26%2520at%25201.40.23%2520PM.png%3Fdl%3D0
[https://secure-web.cisco.com/1j-G-TuRKXU4iWWHZ4wv13XW3o-r7U206GNIBYvUF56HJFUEVvWA1o4GMqKU0fCLtEKJyxqefnti-4qgbZPjJkwYGo-MPkZ28rWb-7HV5N7h07uT2_sPR9f7JmQtTgqwA_EEIByRHNUgHKB0KxnY4COMhGWiyCOe32m7xOosOQKuj_tNC3oqvR8dknx7RZRN-3xNFt6_NyjSWDv0nHrW33wmmTQdrzOX2j6iVksWQ5w8FQLv1aSzRCS5lTBfumX_JWOQGxqm-R8QhfxaTHC6h0yZO7OaAOC0osQlm6H78vfGEt8uH5aHVoSaiHME_h6JqyvnIewMhSG0gHJkDs1Em2Q/https%3A%2F%2Fwww.dropbox.com%2Ftemp_thumb_from_token%2Fs%2Fc2gsp8h8jj7c93d%3Fpreserve_transparency%3DFalse%26size%3D1200x1200%26size_mode%3D4
Screen Shot 2022-01-26 at 1.40.23 
PM.png
Shared with Dropbox
http://secure-web.cisco.com/1zkZ6eB_aOa5fOlAVIrf-e3jHDmQL2iWHEKUnKlJMz6lXJkNAlX-6I1c8FS6J4MMOHuJQ8i-XzjI0wHkABLNu9hzGIGHN9ZEXCBxK2cLNfeiOykrvtIm2-bYdwvYEqzA_1jmrQC45x0EuianrtlnhxTd6UrbdVI3CdqX1MoLi1X5DiZ3aKjk9bakQ-Hk3Ok5CDGx8BN-VKHdHFVWceaUQz3a17f02F0OWB_Omj9Vt1xcoGX8aqujYZMkKGfHaMVxVM3Xi41W37bLN_J1HXNUcKdlQyDTbOoErJw2kvVBDA0hOSWcueBAtKGObj3vyaHv2O6WiGX569XIYCxgvsQ5axg/http%3A%2F%2Fwww.dropbox.com


while one of them is reconstructed with FS7.2, the other one is reconstructed 
with a pipeline that uses another code for extracting brain tissue (BET Mask) 
and then use FS6 for the remaining stages of the reconstruction.

While the final result of both constructions matches in most aspects, they 
don't occupy the same coordinates in space. Is there a way that we can match 
the coordinates of each voxel for two images? Or in other words make them 
compatible.

The Platform we use is CentOS7 .

Thanks and all the best,
Ela

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] segmentation of thalamic nuclei

2022-02-02 Thread Marie Drottar 
External Email - Use Caution

Hello;
I am having trouble with this functionality completing. It appears that
MATLAB exits because of a fatal error.   I am attaching the log file that
was created.
thank you
Marie


thalamic-nuclei-mainFreeSurferT1.log
Description: Binary data
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer