Re: [Freesurfer] xhemi final iteration
Sorry about that, Outlook seems to be preventing me from sending the code in email. I have attached a text document of the output. output Description: output ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] xhemi final iteration
Hi Doug,Thanks for your help.When I run the following command:images$ make_average_subject --out myatlas.i3 --surf-reg myatlas.i2.sphere.reg --fsgd laterality.fsgd --xhemi --lh ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] xhemi final iteration
Here is the debug output.~$ cd $SUBJECTS_DIR ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] xhemi final iteration
Dear Freesurfer community,I am trying to complete the final iteration described in the Xhemi wiki page to compare left-right hemisphere symmetry between a patient and control group but I get an error when I run make_average_subject.Basic information:FREESURFER_HOME: /projects/ics/software/freesurfer/5.3.0Build stamp: free surfer-Linux-centos6_x86_64-stable-pub-v5.3.0RedHat release: Red Hat Enterprise Linux Server release 6.6 (Santiago)Kernel info: Linux 2.6.32-504.8.1.el6.x8664 x86_64Current working directory: data/imagesCommand: make_average_subject --out myatlas.i3 --surf-reg myatlas.i2.sphere.reg --fsgd laterality.fsgd --xhemi --hemi lhError message: ERROR: Flag --hemi unrecognized.To my knowledge, previous steps described on the Xhemi wiki have completed without error. Additionally, I am able to run the command if I do not include --hemi lh flag. Thank you for your help.Kind Regards,Derek DeanDepartment of Psychology and NeuroscienceUniversity of Colorado Boulder ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
