Re: [Freesurfer] ?h.DKTatlas100.gcs to annot
Do you want to do it from your own data? If so, then use annot2std run it with --help to get more details On 12/13/2017 11:16 AM, tony han wrote: > > Hi, > > > Is it possible to get an annot file for ?h.DKTatlas100.gcs, not for > individuals, but for fsaverage atlas? I want to plot the 'standard' > parcellation, instead of individual ones, on the surface so that I can > use as a general reference. Thanks! > > > Tony > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] ?h.DKTatlas100.gcs to annot
they would be in $FREESURFER_HOME/subjects/fsaverage/label
On Wed, 13 Dec
2017, tony han wrote:
Hi Bruce,
Thanks. If there is one available, could you point me to the location of the
files? I check
$FREESURFER_HOME/average and can't find annot files for DKTatlas.
If I'm going to make one with one of the fsaverage subjects, there won't be any
difference of the
resultant annot file no matter which fsaverage subject {fsaverage,
fsaverage3,...,fsaverage6} I use,
right?
Best,
Tony
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of
Bruce Fischl
Sent: Wednesday, December 13, 2017 12:06:18 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] ?h.DKTatlas100.gcs to annot
Hi Tony
I think we distribute one, but if not you should just be able to run
mris_ca_label on the fsaverage subject to generate one.
cheers
Bruce
On Wed, 13 Dec 2017,
tony han wrote:
>
> Hi,
>
>
> Is it possible to get an annot file for ?h.DKTatlas100.gcs, not for
individuals, but for fsaverage
atlas? I want to plot the 'standard' parcellation, instead of individual ones,
on the surface so
> that I can use as a general reference. Thanks!
>
>
> Tony
>
>
>
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
Re: [Freesurfer] ?h.DKTatlas100.gcs to annot
Hi Bruce,
Thanks. If there is one available, could you point me to the location of the
files? I check $FREESURFER_HOME/average and can't find annot files for DKTatlas.
If I'm going to make one with one of the fsaverage subjects, there won't be any
difference of the resultant annot file no matter which fsaverage subject
{fsaverage, fsaverage3,...,fsaverage6} I use, right?
Best,
Tony
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Bruce Fischl
Sent: Wednesday, December 13, 2017 12:06:18 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] ?h.DKTatlas100.gcs to annot
Hi Tony
I think we distribute one, but if not you should just be able to run
mris_ca_label on the fsaverage subject to generate one.
cheers
Bruce
On Wed, 13 Dec 2017,
tony han wrote:
>
> Hi,
>
>
> Is it possible to get an annot file for ?h.DKTatlas100.gcs, not for
> individuals, but for fsaverage atlas? I want to plot the 'standard'
> parcellation, instead of individual ones, on the surface so
> that I can use as a general reference. Thanks!
>
>
> Tony
>
>
>
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
Re: [Freesurfer] ?h.DKTatlas100.gcs to annot
Hi Tony I think we distribute one, but if not you should just be able to run mris_ca_label on the fsaverage subject to generate one. cheers Bruce On Wed, 13 Dec 2017, tony han wrote: Hi, Is it possible to get an annot file for ?h.DKTatlas100.gcs, not for individuals, but for fsaverage atlas? I want to plot the 'standard' parcellation, instead of individual ones, on the surface so that I can use as a general reference. Thanks! Tony ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] ?h.DKTatlas100.gcs to annot
Hi, Is it possible to get an annot file for ?h.DKTatlas100.gcs, not for individuals, but for fsaverage atlas? I want to plot the 'standard' parcellation, instead of individual ones, on the surface so that I can use as a general reference. Thanks! Tony ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
