[Freesurfer] Clusters size treshold question

2012-05-15 Thread Antonella Kis
Dear All,

I would like to know if there is a way to eliminate from my significant 
clusters (grf.th3.pos.sig.cluster.mgh) obtained after runningĀ  mri_glmfit-sim 
with grf option and using mri_volcluster the clusters with a size smaller than 
50 mm^3 or in other words to keep only clusters with a volume/size greater than 
50 mm^3.

Thank you for your time and help.
Regards,
Antonella
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.


Re: [Freesurfer] Clusters size treshold question

2012-05-15 Thread Douglas N Greve
Keep changing the --cwpvalthresh until all clusters smaller than 50 are 
gone.
doug

On 05/15/2012 12:43 PM, Antonella Kis wrote:
 Dear All,

 I would like to know if there is a way to eliminate from my 
 significant clusters (grf.th3.pos.sig.cluster.mgh) obtained after 
 running  mri_glmfit-sim with grf option and using mri_volcluster the 
 clusters with a size smaller than 50 mm^3 or in other words to keep 
 only clusters with a volume/size greater than 50 mm^3.

 Thank you for your time and help.
 Regards,
 Antonella


 ___
 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.