[Freesurfer] Create surface Labels of equal size
Dear Freesurfers, I would like to mark the brain surface (fsaverage) for an illustration of stimulation areas (TMS). I have calculated coordinates in Vertex RAS and Vertex Talairach. They are correctly located on the fsaverage surface in tksurfer. Is there a way to create labels of equal sizes at those coordinates? Ideally by using a script (since I have to mark them in 50 patients). this is purely for illustrative purposes. All coordinates are in fasaverage space. Any help would be appreciated, Bastian ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Create surface Labels of equal size
Hi Bastian you should be able to do this with a tcl script in tksurfer. Take a look at the ones we distribute for some examples cheers Bruce On Tue, 4 Nov 2014, Bastian Cheng wrote: Dear Freesurfers, I would like to mark the brain surface (fsaverage) for an illustration of stimulation areas (TMS). I have calculated coordinates in Vertex RAS and Vertex Talairach. They are correctly located on the fsaverage surface in tksurfer. Is there a way to create labels of equal sizes at those coordinates? Ideally by using a script (since I have to mark them in 50 patients). this is purely for illustrative purposes. All coordinates are in fasaverage space. Any help would be appreciated, Bastian ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Create surface Labels of equal size
Hi Bruce, thank you! I looked up all commands here: http://freesurfer.net/fswiki/TkSurferGuide/TkSurferScripting/TkSurferScriptingReference I guess what I should do is 1) mark vertex at coordinate 2) create label at marked vertex 3) maybe dilate the label. does this sound right? On 4 November 2014 23:24, Bruce Fischl fis...@nmr.mgh.harvard.edu wrote: Hi Bastian you should be able to do this with a tcl script in tksurfer. Take a look at the ones we distribute for some examples cheers Bruce On Tue, 4 Nov 2014, Bastian Cheng wrote: Dear Freesurfers, I would like to mark the brain surface (fsaverage) for an illustration of stimulation areas (TMS). I have calculated coordinates in Vertex RAS and Vertex Talairach. They are correctly located on the fsaverage surface in tksurfer. Is there a way to create labels of equal sizes at those coordinates? Ideally by using a script (since I have to mark them in 50 patients). this is purely for illustrative purposes. All coordinates are in fasaverage space. Any help would be appreciated, Bastian ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Create surface Labels of equal size
yes, exactly On Tue, 4 Nov 2014, Bastian Cheng wrote: Hi Bruce, thank you! I looked up all commands here: http://freesurfer.net/fswiki/TkSurferGuide/TkSurferScripting/TkSurferScriptingReference I guess what I should do is 1) mark vertex at coordinate 2) create label at marked vertex 3) maybe dilate the label. does this sound right? On 4 November 2014 23:24, Bruce Fischl fis...@nmr.mgh.harvard.edu wrote: Hi Bastian you should be able to do this with a tcl script in tksurfer. Take a look at the ones we distribute for some examples cheers Bruce On Tue, 4 Nov 2014, Bastian Cheng wrote: Dear Freesurfers, I would like to mark the brain surface (fsaverage) for an illustration of stimulation areas (TMS). I have calculated coordinates in Vertex RAS and Vertex Talairach. They are correctly located on the fsaverage surface in tksurfer. Is there a way to create labels of equal sizes at those coordinates? Ideally by using a script (since I have to mark them in 50 patients). this is purely for illustrative purposes. All coordinates are in fasaverage space. Any help would be appreciated, Bastian ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
